RNA id: XM_021616161.2


Basic Information

Item Value
RNA id XM_021616161.2
length 4634
RNA type mRNA
GC content 0.52
exon number 21
gene id LOC110532344
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52260178 ~ 52294856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCAAGCTCGGCAGTGgcagcatccatccatccatccaccccctccctctcctacccgTCGCATAGAACAGCCCATTTTAATGTTGCAATCACCTTAGGACGATTGCGGTTAGCGAGGTATCTTTTCAGCATGTAGACCCAAATTCTTGGTTAACTATTGGAGCTTATGCTGTATTATCAGACAAAAAATAACAGCAACGAGAAACATTGGGAACAACGACAAGAACAGTAGGCCTAATAATATCAAATAGCTACCTGTAGTCCATAACCCTTCATTTATGCAAACACGCTAATATCTACCCTGTATCGTTTCATTTTCTTCAGCATTAGAGGAATTCCCCATAGGCCTTGACGTCTGCACAATTTTGTGCTTTACATTTGTATATGCTGACCAGAAACAACAGATGGGACATCACGTCGGTATACATCCCTCAAACGTTTTTTTCTCTGTCGGATTTGAAGTGAATTTGAAAGTGAAGAACATAGGATTTTCTATTTTTCTAAACTCCCAGTTTACGTCCTTGGACATGGCCGGCCTCTAGGTGAATCCACCTTCTGAAGCATCTTTCTCTTTACACTCAAACGCTTGAGCTCTTCTTTTTATTTCTCTCCTTACAAATATCTGGCTCTATGGATTGGTATCCTCCCTATCATTTAGCTTGATGCCCTTTTCTCTTCTGAGGTTGTGAGAAACATCAGATTAAGGTCTCTGGTGGAATAAACCACCGTCAAATcacacaacaaaaacatttccatATGTTCTTCCACATATGCCTTGATATGGAGAATCATAGAaggggaaaaggagggagtgGCATGGGGGAACATTAATCTAAAAATCACATAGTCAAGCATACCCCACTTCCTACCCTGGCCAAGGCACTAAAGGAGTCCATCAGAAAATCATtgttttttgaagaatcaacacaTTTCTATAACCACACATTATCATGGGGGACTTAGCCAATAGCTCGGTGGAGTTCAAACCCAAGAAGCGAGGTAGTGGAGGGGGAATGGAGGTCAACCATGCAGGGGACTTCGGGGCTACCCTGGAGGACCTGCGGGACCTTATGGAACTGAGGGGTGCAGAAGCCATTCAGAAGATCCAGGAGAACTACACGGACACAGAGGGCCTCTGTCAGAGACTGAAGACCTCCCCAGCCGATGGCCTATCGGACAATCCGTCAGACCTGGAGAAGCGTGGCCAGGTGTTTGGCCAGAACTTTATCCCTCCTAAGAAGGCCAAGTCGTTCCTGGAGCTGGTCTGGGAGGCTCTACAGGATGTCACTCTCATCATCCTGGAGATAGCTGCCATCATCTCCCTCGCACTGTCCTTCTACCAACCACCCGGAGAGGAGAGCGAAGcgtGTGGGAACGTGGCGTCCGGTGCAGAGGATGAGGGCGAAGCAGAGGCTGGCTGGATCGAGGGCGCAGCCATCTTGTTGTCTGTAGTCTGTGTGGTGCTGGTGACGGCCTTCAATGACTGGAGCAAGGAGAAACAGTTCCGGGGACTGCAGAGCCGCATCGAGCAGGAGCAGCGATTCGCCGTGGTGCGGAACGGCACCGTCATCCAGATCCCCGTGGCCGAAATGGTGGTCGGGGATGTGGCCCAAATCAAATACGGCGATCTCCTTCCTGCTGATGGGATACTGATACAGGGAAATGATCTGAAGATCGATGAGAGCTCGCTGACAGGAGAGTCTGACCATGTAAAAAAGTCTGTTGACAAGGACCCTATGTTGCTGTCTGGAACTCATGTGATGGAAGGCTCTGGAAAGATGCTGGTTACTGCTGTGGGGATCAACTCTCAAACTGGAATCATCTTCACTCTACTGGGGGCTGGAGAGGGTGAtcaagaggaggagaagaaagacaaGAAAGCCAAGAAACAGGATGAGGCTGTTGCCATGGAGATGCAGCCCCTGAAGAGCGCTGAAGGAGGGGAGGTGGAAGCAGAGAAGAAAAAGGGCAACGTGCCTAAAAAAGAGAAGTCTGTGCTCCAGGGCAAACTCACTAAACTGGCCGTGCAGATCGGGAAGGCAGGTCTGGTCATGTCAGCCATCACAGTGATCATCCTGGTGATGTACTTTGTGATCGAGACCTTTGTGGTTCAGGGCCGGGAGTGGCTCACTGAGTGTACACCTGTCTATGTGCAGTACTTTGTCAAGTTCTTCATCATCGGCGTCACAGTGCTGGTGGTGGCTGTGCCTGAAGGGCTGCCACTGGCTGTCACTATATCACTTGCCTACTCTGTCAAGAAAATGATGAAGGACAATAACTTGGTGCGCCACCTTGATGCCTGTGAGACCATGGGCAATGCCACCGCCATCTGCTCTGACAAGACGGGCACCCTTACTACCAACCGCATGACCGTGGTGCAGGCCTACGCGGGCGACCAGCACTTCCACATGGTCCCAcaccctgaccagatgaatcctATGGTGCTGGACACACTTGTAAACGCCATAGCTGTCAACAGCGCCTACACCTCCAAGATTATGCCCCCAGATAAGGAGGGAGGCCTACCCAAGCAGGTGGGCAACAAGACAGAGTGTGCCCTACTTGGCTTCGTCCTGGACCTGAAGAGGGACTATGCCCCCGTGAGGGAACAGATCCCTGAGGAGAAGCTCTACAAGGTCTACACCTTCAACTCGGTGCGCAAGTCCATGAGCACAGTGGTGCAGTTGCCCGATGGatccttccgcctctacagcaaGGGGGCCTCTGAGATCCTGCTCAAGAAgTGCTCCTCTATCATGGCTGGGGGTGGAGATCCGCGGGGTTTCCGCCCACGGGACAGGGATGAGATGGTGAAGAAGGTGATCGAGCCCATGGCCTGCGACGGCCTGCGCACCATCTGCGTGGCCTACAAGGACCTGCCGGCCAGCCCTGAGCCCGACTGGGAGGACGAGGCGGGCATCGTCAGCGACCTCATCTGTATCACCGTGGTGGGCATCGAGGACCCTGTCCGCCCAGAGGTCCCAGATGCTATCAAGAAATGCCAGCGAGCAGGTATCACGGTGCGCATGGTGACAGGTGACAACATCAACACAGCACGAGCCATCGCTGCCAAGTGTGGCATCATCCAGCCAGGGGATGACTTCCTGTGTATAGACGGGAAGGAATTCAACCGACGAATCAGAAACGAGAAAGGAGAGGTTGAGCAGGAGCGCATTGATAAAGTTTGGCCCAAACTGAGAGTTCTGGCTAGGTCCTCACCTACAGACAAACATACACTGGTTAAAGGCATCATAGACAGCACCGTACTGGAACAGCGGCAGGTAGTGGCTGTGACAGGGGACGGGACAAACGACGGACCCGCCCTGAAGAAGGCCGATGTTGGCTTTGCCATGGGCATCGCTGGTACTGACGTAGCCAAGGAAGCCTCTGACATCATCCTGACTGATGACAACTTCTCTAGCATTGTGAAGGCGGTCATGTGGGGACGTAACGTCTATGACAGCATCTCCAAGTTCCTCCAATTCCAGCTCACTGTCAACGTGGTGGCTGTCATTGTGGCCTTCACCGGCGCTTGTATCACACAGgACTCTCCTCTGAAGGCTGTCCAGATGTTGTGGGTGAACCTTATCATGGACACCTTTGCCTCCCTGGCCTTAGCCACCGAGCCACCCACTGAGTCCCTGCTCCTGAGGAAGCCTTACGGCCGCAACAACCCCCTCATCTCCCGCACCATGATGAAGAACATCCTGGGCCATGCCATCTACCAGCTCACTATCATCTTCACCCTGCTGTTTGCGGGAGAAAAGATCTTCAACATTGATAGCGGACGCCACGCCCCTCTGCACTCTCCCCCTTCCGAGCACTACACGATCATCTTCAACACCTTTGTGCTCATGCAACTGTTCAACGAGATCAATGCCCGTAAGATCCACGGTGAAAGGAACGTTTTCGACGGCATATTCCACAACCCTATTTTCTGCAGTATTGTGCTGGGGACTTTTTTAATGCAGTTTGTGATTGTGCAGTTTGGGGGGAAACCTTTCAGCTGCACACCACTCAATGTGGAGCAGTGGCTGTGGTGTCTGCTCGTGGGAGTAGGAGAGCTGCTGTGGGGACAGCTCATCACCACGGTGCCTACCAGCCACCTGCCCTGTCTGAAGGAAGCGGGTCATGCGCTGGGTAAGGAAGAGATGATTGATGATGACATGGCAGATGATGAGCAAGAGATTGACCATGCTGAGAGGGAGCTACGTCGAGGGCAGATTCTCTGGTTCCGGGGCCTCAATCGTATTCAAACTCAGATGGAGGTAGTGAGTACCTTCAAGAGAAGTGGTTCCTTTCAGGGTGCTGCGAGACGTCGCTCCTCAGTTCTCAGCCAACTCCATGACGTAACCAATATTTCTACTCCCACTCACGTAGTTCTCTCCACTGCCAATGCAACTGGTGCGCCTGGGAATCCGAGTGGTGAAAGCATTCCATAGCCCACTTTATGATGGCATTGAGAAGCCGGAATCCAAGAACTCCATCCACGACTTCATGGCACACCCGGAATTTCTCATCGGTGACTTGGTCCACAACATCCCCTTGATTGATGAGACAGACATTGAAACCGAAGAATCAGAGCGCTCAGACTGCAACAACATTCGCCTGGCTTTTCGTCAAGCTCCTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU928973 lncRNA upstream 7300 52204844 ~ 52252878 (+) True LOC118966072
TU929001 lncRNA upstream 10031 52249545 ~ 52250147 (+) True LOC110531200
TU928964 lncRNA upstream 60824 52198963 ~ 52199354 (+) True G816788
TU928957 lncRNA upstream 83437 52176538 ~ 52176741 (+) True G816781
TU928954 lncRNA upstream 87458 52172479 ~ 52172720 (+) True G816778
TU929073 lncRNA downstream 71312 52364640 ~ 52366398 (+) True G816872
TU929074 lncRNA downstream 73625 52366953 ~ 52371758 (+) True G816873
TU929076 lncRNA downstream 78856 52372184 ~ 52375043 (+) True G816875
TU929066 lncRNA downstream 132029 52425357 ~ 52443755 (+) True G816865
TU929117 lncRNA downstream 136658 52429986 ~ 52431199 (+) True G816914
XR_005053283.1 mRNA upstream 6766 52251117 ~ 52253412 (+) False LOC118966072
XM_036988291.1 mRNA upstream 9287 52246372 ~ 52250891 (+) False LOC110531200
XM_021616148.2 mRNA upstream 25235 52229758 ~ 52234943 (+) False dedd
XR_002474822.2 mRNA downstream 29673 52323001 ~ 52325924 (+) False LOC110532349
XM_021616200.2 mRNA downstream 192195 52485523 ~ 52488233 (+) False sike1
XM_036988302.1 mRNA downstream 192221 52485549 ~ 52488233 (+) True sike1
XM_036988303.1 mRNA downstream 209669 52502997 ~ 52504594 (+) True LOC118936401
XM_036988304.1 mRNA downstream 220183 52513511 ~ 52514463 (+) True htr6
TU927907 other upstream 913684 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 1181236 51078447 ~ 51078942 (+) True G815610
TU927553 other upstream 1459797 50796214 ~ 50800381 (+) False G815428
TU927551 other upstream 1459797 50796320 ~ 50800381 (+) True G815428
TU925067 other upstream 3144560 49115137 ~ 49115618 (+) True G813139
TU929026 other downstream 29943 52323271 ~ 52325640 (+) True LOC110532349
TU929242 other downstream 433093 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 2433543 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 2939930 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 3237709 55531037 ~ 55615401 (+) False dlgap4a

Expression Profile