RNA id: XM_021616200.2


Basic Information

Item Value
RNA id XM_021616200.2
length 1961
RNA type mRNA
GC content 0.42
exon number 6
gene id sike1
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52485523 ~ 52488233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAGGCTGGTCTGGTTGGTCTATTTCAAAAGCGTTCCTGGATGTTGCGCGTATGGGTTTAGAAACTGTGTTACCATCTTGAACGCAACCCTGCTTACGACCGGAAGTGATGTAAAACTAATGAGTCACATTTTGTTCCGAAAACAGCGGTCTCCAGCTAGTGCTGAAGGCTATGGCGTGCACTTTGGAAAAGGTTCTTGGCGATGCTCGCACGCTGCTTGAGAGGCTCAAAGAGCACGACACGGCGGCAGAAGGACTGATCGAGCAGTCTGGAGCGCTCAGCCAGAAGGTTCAGGGCATGAGAGAGGTGGGGAATGCCCTTCCAGACAAGTACATGGAGGAAAGTTCTGAGATACAGGAGTTGTCAAAGTACAAGCCTCACGTCCTGTTAACGCAAGAGAATACCCAAATAAAGGAACTACAGCAAGAAAACCGAGAACTGTGGCTGTCTTTGGAGGAGCACCAGTATGCGCTAGAATTGATCATGGGTAGATACCGCAAGCAAATGCTACAGCTTATGATGGAAAAGAAGGAGCTGGACACAAAGCCTGTTCTTAGCCTTCATGAGGACCATGCCAAGGAAGTGCAAAGCCAACTGGAGCGGATATGCGAGATGGGTCAGGTGATGAGAAGAGCTGTTCAGGTGGATGACCAGCACTACTGCTCTGTGCGAGAGAGGCTTGCCCAACTAGAGATTGAAAACAAGGAGCTGCGAGATCTACTGACCATTAGTAAGAGTTCTGTGAGGCCACAGAAGGAAGACTCCAGCCAATCAGCGACAGAGGAAGAAGCCGAACCGGGGACCAATCAGTAATGGACTCGATAGAGAAGATCTCAGTTGCATACTCCTcgcttcctctcctcgtctccttctcaaaaccttttgaatgagaaagccagaggttctGCCCCTCTGACATTCTCCTCCAGTGGGTTTTGAGGAGTGAGGACAGTAGGAGTATGCAATCGAGAACTTCCCATAGAGAGGAGTTTGGATTGTTCATGGAGAAGAACAGTTCCCCGGGGCCACAAGACAGGGTTGATTACATTTTCACCACCAGTCACCCCTTCCCTTTAAGACAAAGTCCATGTTTTGTGTTGTTAGTTACCATTTAATATATATTTCCAAAGGTGCTCCTGCTGCCCAATGAAGCACTGTAAAGGCACAGAGAAGAGAGAATACTGTTTTTGTCAGGAAAGATTAGCTCTTGTACAACAGTTTTAGTATAGAGGGTGAACTTTTGCATTGGCCAAAGATAATCACATTTGCTTTTTATGGCATGGTCTCTAGCTTTTCATTTTGAGTCATTTGTTCAAATGTACTTGGAACATTGTAGAAATAATCATGTGGTCAATTCACGGGAAACCAAATGCCAACTCTCCCCACATGGTTTAGCAAATGTTATGCTGTCAAACTGCAAGTCTTGATGTTTATTCCCCTGGGCCTGATATGACATCTTGTTGTCTCAAaatgtttcaaatcaaattgcgTTTTTCACATGGGCTTACTTATggccccttaaccaacaatgcagagtttttaAAACAGTAAGAAATTCAGTCAATCAATTTTCAGTCTGACTTGCTTGTAGCAGATTAACAGTTTGTATCTGTATGTAATTATCTGCTACATTAGAACCATTAGAAATATTTTGTTAATGTCTGTAATTCatgtgtaaaaatatatatatttttcatgtcTGGTATAATACTTACATAATGAGTGAGTGTAACATGTTCTTGACATTAGCGTTTGACCATAACTTAGATTTGAGGctcttttttaaattttatttttaaCAATCCAACAGCTTGACGGACTGTTGTCAAATTGTATATGACATTGTCATCTCAGGAAACTTTCTTGTCATTATTGCAAAAGTGAGCTGTAATTTCTTCAAAGCTTTGATGAGTGAATTTATTAAtttgatgtgtcaaataaatATTAATCAAATGCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU929066 lncRNA upstream 41768 52425357 ~ 52443755 (+) True G816865
TU929117 lncRNA upstream 54324 52429986 ~ 52431199 (+) True G816914
TU929076 lncRNA upstream 110480 52372184 ~ 52375043 (+) True G816875
TU929074 lncRNA upstream 113765 52366953 ~ 52371758 (+) True G816873
TU929073 lncRNA upstream 119125 52364640 ~ 52366398 (+) True G816872
TU929132 lncRNA downstream 2763 52490996 ~ 52491313 (+) True G816929
TU929134 lncRNA downstream 4402 52492635 ~ 52492840 (+) True G816931
TU929137 lncRNA downstream 6312 52494545 ~ 52494810 (+) True G816934
TU929143 lncRNA downstream 17759 52505992 ~ 52506287 (+) True G816940
TU929144 lncRNA downstream 18061 52506294 ~ 52506512 (+) True G816941
XR_002474822.2 mRNA upstream 159599 52323001 ~ 52325924 (+) False LOC110532349
XM_021616154.2 mRNA upstream 190667 52260180 ~ 52294856 (+) False LOC110532344
XM_036988303.1 mRNA downstream 14764 52502997 ~ 52504594 (+) True LOC118936401
XM_036988304.1 mRNA downstream 25278 52513511 ~ 52514463 (+) True htr6
XM_036988306.1 mRNA downstream 61894 52550127 ~ 52559520 (+) False vwa1
XM_021616203.2 mRNA downstream 61894 52550127 ~ 52567525 (+) True vwa1
XM_021616208.2 mRNA downstream 118210 52606443 ~ 52621080 (+) True LOC110532365
TU929026 other upstream 159883 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 1139029 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 1406581 51078447 ~ 51078942 (+) True G815610
TU927553 other upstream 1685142 50796214 ~ 50800381 (+) False G815428
TU927551 other upstream 1685142 50796320 ~ 50800381 (+) True G815428
TU929242 other downstream 238188 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 2238638 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 2745025 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 3042804 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 3209407 55697640 ~ 55697978 (+) True G820944

Expression Profile