RNA id: XM_036988303.1


Basic Information

Item Value
RNA id XM_036988303.1
length 1598
RNA type mRNA
GC content 0.52
exon number 1
gene id LOC118936401
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52502997 ~ 52504594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAGAAGCAGGACTATTTGACACGATGGAGAGATGGAAACGGTGTTGGCACTTCTGATCGCAGTGTTAAGAGGAGATTTTCACACTTAAGAGAGATAAATGACTCACAGGCTCCTCTTTTAACCTTGGGAAGGATGTGGTGAATGGATGATCAACACAGGACTTCGGTGGCTTCTCTTTATTCTCCTCAAGTGTCAGGAAAGCTTTAGCGGCACTAACAAGCACCAGAAGTCACATACATTTTGCGCAACTTTTCGTCTTCACAGACTGGGAGAGGAACAGGGAAGCTCTCACATTGACCAATGTCAACTACCGCTATGGGCGACTCTGCCTTAACTGGCTTAGAGGCAGCAGGTGTGGATGCTGTTAACCCTTTAGGGAGCTCCAATGGCAGCTTGTCCACGAGCAGTGCCTGGGGCATCAGTGGCAGCGGTCCGTGGCTGTTGGCGTGCATGTTAACCCTCATCATCCTGATGACGGCTTGTGGAAACACTCTGCTGATCACTCTGGTGTTTGCCCAGCGCTCCTTACGCAACACCTCCAACTGTTTCCTGGTGTCTCTCTTCCTGTCGGACCTGATGGTGGCGCTGGTGGTGATGCCGCCAGCCATGCTCAATGTGCTGTGCGGGGCCTGGGTGTTGTCGCCGGGCTTTTGCCCCGTGTGGCTCTGCTTCGACGTCATGTGCTGCAGTGCCTCCATTCTCAACCTGTGTGTGATCAGCCTGGACCGCTACCTCCTCATCATCTCGCCTCTGCGTTACAAGCAGAGGATGACGCTTCCCAGAGCCCTGCTTCTGGTGGGAGGGGCATGGGGTCTGGCCGCCCTCGCCTCCTTCTTGCCCatcaagatgaactggcacagctTGGGTCACCGAAGTCACCATTTCCCAATGCACGGGGCTGGCAGTGCCAACATCAGCACATACCCAGAGCTAAGCTTGCGGTACCCCGCTTCCTACTTCCAGCTGTCACCCGCCGATGGCCTGTCCTTCCAGTGTTGTCTGCGGGTCACCCTGCCCTTTGCCCTGGTGGCATccgtcctcaccttcttcctgcCATCCAGCGCTATCTGCTTCACCTACTGTCGGATTCTCCTGGTGGCACGGAGACAGGCAAGGCGAGTGGCGGCGCTAAGTCACCCTCCGTACCCGCAACATTCGCCCAGAGGGCCTTCTCAGCCTCCCTCACCAGGTGGGTGCGCCGCGGGACATGCTCACCATGACAGAGAAGACTACAATCAGGAGCGCTCTATGTCACACCAAGTAccggtgagagggagaggggagttgTAGAGGAAATTAAGGGAGATACATTGAGGCTACATCTCACAGCTGTGTAAACTGTCACTGCATGATCACTGTGTGCCTGGATAGATTTCCACCATGATGCCTTTTCTGCCTCTCAGATCAGTTGGGTCGTTCCACAAAAAGAGTGCCTTTcgcgtccctttgatatttttaTAGAAATTGAGTTCCAATATTGAATtgtaaaagcctgttatattaaatggagtacccctttaatatagaccacatggagaattcaataaatctgattttttaaatattattcatattcaacatattcaaCATCCATGT

Function

GO: NA

KEGG:

id description
K04162 HTR6; 5-hydroxytryptamine receptor 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU929137 lncRNA upstream 8187 52494545 ~ 52494810 (+) True G816934
TU929134 lncRNA upstream 10157 52492635 ~ 52492840 (+) True G816931
TU929132 lncRNA upstream 11684 52490996 ~ 52491313 (+) True G816929
TU929066 lncRNA upstream 59242 52425357 ~ 52443755 (+) True G816865
TU929117 lncRNA upstream 71798 52429986 ~ 52431199 (+) True G816914
TU929143 lncRNA downstream 1398 52505992 ~ 52506287 (+) True G816940
TU929144 lncRNA downstream 1700 52506294 ~ 52506512 (+) True G816941
TU929154 lncRNA downstream 23814 52528408 ~ 52529246 (+) True G816951
TU929162 lncRNA downstream 35475 52540069 ~ 52540439 (+) True G816956
TU929163 lncRNA downstream 37007 52541601 ~ 52541824 (+) True G816957
XM_021616200.2 mRNA upstream 14764 52485523 ~ 52488233 (+) False sike1
XM_036988302.1 mRNA upstream 14764 52485549 ~ 52488233 (+) True sike1
XR_002474822.2 mRNA upstream 177073 52323001 ~ 52325924 (+) False LOC110532349
XM_021616155.2 mRNA upstream 208141 52260180 ~ 52294856 (+) False LOC110532344
XM_036988304.1 mRNA downstream 8917 52513511 ~ 52514463 (+) True htr6
XM_036988306.1 mRNA downstream 45533 52550127 ~ 52559520 (+) False vwa1
XM_021616203.2 mRNA downstream 45533 52550127 ~ 52567525 (+) True vwa1
XM_021616208.2 mRNA downstream 101849 52606443 ~ 52621080 (+) True LOC110532365
XR_002474827.2 mRNA downstream 155080 52659674 ~ 52663309 (+) False LOC110532366
TU929026 other upstream 177357 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 1156503 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 1424055 51078447 ~ 51078942 (+) True G815610
TU927553 other upstream 1702616 50796214 ~ 50800381 (+) False G815428
TU929242 other downstream 221827 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 2222277 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 2728664 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 3026443 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 3193046 55697640 ~ 55697978 (+) True G820944

Expression Profile