RNA id: XM_036988306.1


Basic Information

Item Value
RNA id XM_036988306.1
length 2178
RNA type mRNA
GC content 0.56
exon number 6
gene id vwa1
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52550127 ~ 52567525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAACACTGGATGGGAGGGGGGGTCAGAGCGAAGAACCGACTAGAATGCTCGCGCTTTTTAACTTGCGCGCACTAACTCACGGAGGCTACCAGAGCAACCAACAGACAACATTTGATCTTTGGGAAATATTACAAGAATGTAATGTTCCAGAAAAGCGGAAACAAAACGGGAAAGTCTCGGTGAAAGTGAGAATTTGGGATATGAAGTTTCAAGCCGCAATTTATTGCCTAAGTATCCTGAATGGAAGGCTCATTACCATTTCAGTTGGAGCGACGGTTCAGGAAATGAACACATTTTTGGAGGAAACCCTATTGATATCATCATAATTATTTCTACCGAAATTGATCACAATAAACACTTGAGATGAAGAATCGGATTTTGTTTACTTGCATACTGGTTGGAATGTTCCTGCGGAAATCCTGTGGTCAAAACTCAGCAACTGAAGAAGtgTTGAACTGCTGTGAGGGCGACATCCTCTTCCTATTGGACTCCTCAGGCAGCGTCTCATCCTATGAGTACTCCCGCATGCTGGGCTTCCTGTCCGagctcctcctccccttctcattGGGCGAGGACCAGGTGAGGGTGGGGCTACTGCAGGTGGGCACCCAACCCCGCCTCGAGTTTGGCTTTGACGCCCACAATACCCAATCTGGCCTCCAGGAGGCACTGGGGAACACCAAGGCTCTGAGGGGCGACACCAATACAGAGGAGGCCCTCAGGATGGCCAAGGACTGGGTGCTGAAGCCTGGAGGGGCCAGAGGGGCCAGGGCAGAGCTACCCAGGGTTTTAGTGTGGCTGACGGACGGGGTGAAGCCGGGTGATGTGATTGGACCAATGGAGGAGCTGAGAGAGGAGGGCGTAGCCGTTCTGGTGATCTCCACGGGCCACGGGAACTACCAGGTGCTGCGGCAGGTGGTCACCCCACCTGTGGAGTCACACCTGTACTTTGTGGACATTGACGATATGAGTATCATCACCGAGGACCTGAGGGATGCCATtattgAGATCCTCTGGGCTGAACGGCTCCAGGTGCGAGATGTGTCCACAGACAGCGCTGTGCTGCAGTGGCGACCGGTTCTGGCCGGATTGAACGGTTATTATGACATCCGGTTTGGACCGGCTCCCAGTGGGGGAGTGGttggaggaggagcaggggggcCTGGTACCAGCCCCAGTACCAGCGGTGGCCAGTACCAGAGACTCACCCGGCCAGGGGACTCTAGCACGGCCAGGCTGACGGGACTAAAGCCAGACACCACCTACACAGCCACACTGACTCCTGAGTCCAACCTGCAGGTGCTCAACCCCCTCTCCGTCACCTTCACCACTAAGCCAGAGGTGTTGAGCCCAGCCGTGGTGACGGTGTCGGACTCAGAGGCCAATAGTGTGAGGGTGAGCTGGGGTCCTCTGCAGCCAGAgtctgtccagagcttccaggTGGAGTACTCAGCGCTCCCGGGGGGGAAGCTCCACATGACTACTGTGGGCCGGGGGCAGAACTCCACCATGCTGACCAACCTCCAGCCAGACACCCAGTACTTGGTCACCGTGAGCGCCCGTCACTCCTATGGCCAGGAGAGGGCCATGTCTGTCAAAGTGTGCACTGAGGAGGTGAGGCCGGATCTTGCAGACCTGCGGCTGACCACGGTGGGCAGTGACTCTGTGCAGGTGGACTGGAAAGCCAGCATGGACGGCCTCAGGGGCTACTGGCTCACCTGGGAGGGACAGGACGGCCACGGCTCTACCACCGCCCAGCGCTCCTCCTTCTACCTGCCCCCCAACTTACTGTCCACACGTCTGACACACCTGCCCCCCAccaccagagtgtgtgtgtggcctgtaTACCGGACGACACGCGGGAAGGGCCTCTGCTGCACGGCCCAGTTTCATTCAGgacaatgacccaactcacctccaggctgtgtaagggctatttgaccaaataggagagtgatggagtgctgcatcagatgacctggcctctacaatcacccaacctcaacccaattgagatggtttgggatgagttggaccgcagagtgaaggaaaagcagccgacAAGTGCTTAGCAAATGtggtgaactccttcaagatagttggaaaagcattccaggtaaagctggttgagagaatgtaaaaaatgtgcaaagctgtcatcaaggcgaagggtggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU929168 lncRNA upstream 4947 52544962 ~ 52545180 (+) True G816962
TU929163 lncRNA upstream 8303 52541601 ~ 52541824 (+) True G816957
TU929162 lncRNA upstream 9688 52540069 ~ 52540439 (+) True G816956
TU929154 lncRNA upstream 20881 52528408 ~ 52529246 (+) True G816951
TU929144 lncRNA upstream 43615 52506294 ~ 52506512 (+) True G816941
TU929178 lncRNA downstream 9543 52569063 ~ 52570146 (+) True G816972
TU929175 lncRNA downstream 11414 52570934 ~ 52572824 (+) True G816969
TU929187 lncRNA downstream 28913 52588433 ~ 52588713 (+) True G816981
TU929191 lncRNA downstream 32530 52592050 ~ 52592363 (+) True G816985
TU929194 lncRNA downstream 36464 52595984 ~ 52596584 (+) True G816988
XM_036988304.1 mRNA upstream 35664 52513511 ~ 52514463 (+) True htr6
XM_036988303.1 mRNA upstream 45533 52502997 ~ 52504594 (+) True LOC118936401
XM_021616200.2 mRNA upstream 61894 52485523 ~ 52488233 (+) False sike1
XM_036988302.1 mRNA upstream 61894 52485549 ~ 52488233 (+) True sike1
XR_002474822.2 mRNA upstream 224203 52323001 ~ 52325924 (+) False LOC110532349
XM_021616208.2 mRNA downstream 46923 52606443 ~ 52621080 (+) True LOC110532365
XR_002474827.2 mRNA downstream 100154 52659674 ~ 52663309 (+) False LOC110532366
XR_005053291.1 mRNA downstream 100154 52659674 ~ 52663309 (+) False LOC110532366
XR_002474825.2 mRNA downstream 100605 52660125 ~ 52663309 (+) False LOC110532366
XM_036986953.1 mRNA downstream 121991 52681511 ~ 52684202 (+) True LOC110531201
TU929026 other upstream 224487 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 1203633 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 1471185 51078447 ~ 51078942 (+) True G815610
TU927553 other upstream 1749746 50796214 ~ 50800381 (+) False G815428
TU929242 other downstream 166901 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 2167351 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 2673738 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 2971517 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 3138120 55697640 ~ 55697978 (+) True G820944

Expression Profile