RNA id: XM_021616208.2


Basic Information

Item Value
RNA id XM_021616208.2
length 2323
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC110532365
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52606443 ~ 52621080 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacacacacacacacacacgaaaaggGATGGTGGATGCTCCTGACTCGATGGCTAAGACGAGGTGGGATAATCATGCGTGTCTGGCCCCGGGCGTTGATGCAGCTGCCGTTGCCTGATCTTTACTGGGCTGAGGGTAGGGTTGTTCCGGTTCCGACTGGATCTTCATCTCGATTCGGCTTGACATCGATGTTATCAAGCTATTTACATGTAAGAAGACAACGACTGATGTAGCCTAAAAAGCGCAACCGCAATTattgaaaacatctgaatggTGTAATTAAATGCTACCATCGATGGAGGAGGATCTTATTTATAATAACTATTGAAGTGCTGTCTTGGAGGAAGGGAAATAACCAGGGACATCCCCGTGAGACGACCGGCTCACCCGTTCTCCTGTTTGCTGCGATTTTTTAAAAATGAGATCGGTACGTAGGCTGCCGTGAAAATAACATAATTGCATTAGTAATCAGGCTAGGACACCCTCTCCACCAGCACCCTATTTTCGCCGTTCCAGGGGCAGCAAACGCGGCACCGAACGCAAACCCGTCCACGACCCGGTCCGCGCCATCAAATCGACGCATTACTGGATGGGGAGTAGCATAGACTGTGAAGACCGTGAGTGCGTGTGTCaaaagggggacagagggagaccgGGCCAGCTCAACCCCCTGCACCGGTTAATTGCGCTCTAATCTGGCAAGTTTGGAGGGACGGAGAGTCCGGTGCAGTAAGGGCGCCTCAATGACCGTCTCATCCCGGGACAGGTAGAGAAGGCTAGAGAACGGCGGCGTGTTTGGAAGTTTTGATGCATATGATCACAACCACCATGATTTTTATGATTCTTGGCGCTTCAGTTGTAATGGCGATTGCCTGTTTAATGGACATGAACGCACTACTGGATCGCTTTCACAACTACATCTTACCGCATCTACGAGGGGAAGACCGCGTCTGTCATTGCAACTGtggaagGCATCATGTCCACTATGTGATCCCGTACGATGGGGACCATTCTCTGGTGGACTCGTCGGAGAACTACTTTGTCAGTGACAGCGTAACCAAGCAGGAGATGGACCTGATGCTGGGGCTGCTGCTGGGCTTCTGTATCAGCTGGCTCCTACTGTGGCTGGATGGAGTGCTGCACTGTGCTGTCAGGGCATGGAGGGCCAGCCGCTACTATGACACCCCTTCCTGGTCATGGCTCCCCTCATTCTGTAACCTTCGAGATCTGCGTCGACGCGCCCAGCTCAGACAGCTGGAGGACTCCACTGGCAACATGGTCCACATCAAGCAGAAGCTCTACCACAACGGCCACCCCAGCCCACGCCACCTCTGACTCTGAAACAAGAATCCCCCCTCCAGCCCCTCAAACTGCCCCAAGGCCAACTGCTGCCTCAGAGACACTGGAAAACTGCCCTCCGACTGTTCATAACACACCTGGCCCGAAACTTTCTTACGATGATCCTGACACAAGTCAGCACCCACCAATCCAAACTCGAGCAGAAGATAGTCGTCACTGAAATCTTGTCTATGTCCATGTCCACCATTGAGGTAGGAAGGAAAAACAAGCATTTTTAAGGGTGCTTTCTGTATAGAAAAATGTTCTGTGTTCATTGTTGAAACTTGGCATGATCTTTTAGAACAGGGTACGATGATGGGGGGCACAGtgtttattaaaaaaaatctcTATGGGGAGGGTATTTCTCTAAAGTGGGAGGGAGGTAAATGGATAGGGGTGGGTTTCAAGATTTTATGATGGGAAGTTTAGATTGCTGCTTCTGTAAATACTTCTAAATATGGGGAAGTGGGAACACAGGGTAGGTTTGTTCGTGAGTGTGGTGAGTCAAGTGTTACGAGTAGAGCTGATGGACTGTATGGAAGGATAAACGGAGCGTAGGAAAGAGGAGGATGACAGCCGTCTGGAAGTGAACAGTGTGATGTCTGCTAAAAACAGATTAATTTGTTTTGTTACCTAGTGAATTAAATGAATGTATTAATTTTACCTGTAAATataagagggggaggggagcatACGTTTGTGGTTAGGGTTCTCTGCACTGTTATTATTTATGAGAAGGTAGAAAATGAATGCCAGTCAAGATAAGACGGAGACAGTTCAGTGCTTCCCTCGTCTTCCCAATATTGTGTCCAATAGCACTTCCCACTTTGCTACATCCAATTCCTTCATACTTACTCAAAAGCAACCAGCCTAGAAGCAGTGGGAACCCtcacccagtccctctctccctctctgtccagaCATTGCTGTTGTGAAGATAAAATGTCTGTTTTATTAAAAGTGCCATTGAAGCACAACAGTGA

Function

GO: NA

KEGG:

id description
K24870 TMEM240; transmembrane protein 240

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU929195 lncRNA upstream 9404 52596812 ~ 52597039 (+) True G816989
TU929194 lncRNA upstream 9859 52595984 ~ 52596584 (+) True G816988
TU929191 lncRNA upstream 14080 52592050 ~ 52592363 (+) True G816985
TU929187 lncRNA upstream 17730 52588433 ~ 52588713 (+) True G816981
TU929175 lncRNA upstream 33619 52570934 ~ 52572824 (+) True G816969
TU929223 lncRNA downstream 25854 52646934 ~ 52647156 (+) True G817016
TU929229 lncRNA downstream 33579 52654659 ~ 52654926 (+) True G817021
TU929233 lncRNA downstream 39662 52660742 ~ 52661046 (+) True LOC110532366
TU929442 lncRNA downstream 412059 53033139 ~ 53033358 (+) True G817215
TU929448 lncRNA downstream 417049 53038129 ~ 53038474 (+) True G817221
XM_021616203.2 mRNA upstream 38918 52550127 ~ 52567525 (+) True vwa1
XM_036988306.1 mRNA upstream 46923 52550127 ~ 52559520 (+) False vwa1
XM_036988304.1 mRNA upstream 91980 52513511 ~ 52514463 (+) True htr6
XM_036988303.1 mRNA upstream 101849 52502997 ~ 52504594 (+) True LOC118936401
XM_021616200.2 mRNA upstream 118210 52485523 ~ 52488233 (+) False sike1
XR_002474827.2 mRNA downstream 38594 52659674 ~ 52663309 (+) False LOC110532366
XR_005053291.1 mRNA downstream 38594 52659674 ~ 52663309 (+) False LOC110532366
XR_002474825.2 mRNA downstream 39045 52660125 ~ 52663309 (+) False LOC110532366
XM_036986953.1 mRNA downstream 60431 52681511 ~ 52684202 (+) True LOC110531201
XM_021616211.2 mRNA downstream 71596 52692676 ~ 52734929 (+) False LOC110532368
TU929026 other upstream 280803 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 1259949 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 1527501 51078447 ~ 51078942 (+) True G815610
TU927553 other upstream 1806062 50796214 ~ 50800381 (+) False G815428
TU929242 other downstream 105341 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 2105791 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 2612178 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 2909957 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 3076560 55697640 ~ 55697978 (+) True G820944

Expression Profile