RNA id: XR_005053291.1


Basic Information

Item Value
RNA id XR_005053291.1
length 2155
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110532366
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52659674 ~ 52663309 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTATACGACTGGCAAGCACATTTCTACGGAAGCCCATACAGTATGGACTATATAGCCTGCATTTGAATAAGAGTTTGTTCAACAACAAAAGTTAAGAAATAAATAAGGGTTAAGGCTGTTGTCATAAACTGACTTCCAGTTGTCATGCCTGTTTATGACATATTTATAACACTGTTATGATGGATTCATGGGAAGTTTAACCATGTTTTTCTTCTGTCATGTTCTATCAATCCATTCATGAGGCTATGGCCCTCTTGCGCTGTTGCCCTTCTCATCCCTCCAGCAGATGAGTGTGGTGACGGTGGCCCCCGGGGGACAGCCATCCCTCGCCTTTATCAAAGAGGGCCCGAGATCATGGCCAGGCTCTGCCTGAAAGAAAGCAGTAcgggagaaagacaaagagagaggagagataaagagagccaTGAAGGGGGAGTTAGAGATAGACATGCAGTCCCTGCGGTCTGCTGGTAATGAACAATCTGGTCAAGCCGGTGAGTGCTGAGGTCATAACTACCCTCATATTGGCACATCTTCATATCATCATGGTCACTGGTATGAATagcatctctctgtctttgtaGCCCAAACATGGTCTGTTCTACTGTTAATAAACTGTGCTCTGGATCAGATGACATTCACAAATACTTGAAATAGCTTATCTATTGACTACTGTGAAGTTGGTCCAATTAAATGAAAGACAGGAAGAATGGTATCCTAACTTGTTGCGGGTCTATAGGATACCTTGTGAGTATAAAACCATCACAGAACAggtgaggaatttattctgcaatgaTTCTAATCTAACCTAGGAAAAGGATGCCTATTTCTAATTATTCTAGAATGCAAAGAAACAAAATTGCTGTTCTCTCTTCTCACTAACAGCAAACAATTTCATCTTATCAATTTGTTATGAACAAACGTGTCCATCTTATCCCCCATTTGCACAAAATACTAGGCTACTTGCCTGCTTGCAATACTTCAAGCACTAGAAACTGTGGATACGCATGGTCTAAAGTTTGCGAGATGGTGAGCACATTCTAACCTCAAATTGAGTTTTTATAAAGGTACATTTTGTGTGAAAACTGCCACACGCATGTTTTAGGGTATGTTTTGTATGTACGCATGGTTTATAAATTAGGCCCCAGAGGAGGAGACGGGACTAGAATGACATTGATTGAAAGTATGGAAAAGGAGAAAGACAAAGAAACTCTGTAGCGAATGGAGGTACATGAAAGGACAGACGAAGGGCAGATTCTTCCATTGATTGGCTCAGTTCACTTTGGCacagctcagtagtgtgaaaagggtacaGGCCTAAGGTCTCAcccactccccatctccctccctgtgtAGCTACAGTGTGGGCATATGGGGAGACGGGCTCAATGACTGCGGAGCCTTGAGGGCCGCAGATGTAAGTGTGTCTGTCTGAGGATGATGCTTCTGTGGACTCTCCCTTCACCTCCAAGTCAGACAACATCAGCTGTACACGGAGAAGACTAACCTGGTCAACCTGCAGTTCCTGTTCTTTCCTGGTGATGCTGCTGGCAATCATTATAGGGAAAGGGGGACCCAGCATTGAGCTGTGCCCCTAGCGGCCCCACACCAGACTTCTGGCGCTGCCGGTCCTAGCTAGCCTGATGCTGCACACCCTGCTGCTCATCCTGGGCCAGGTGTCCACTCTGCAGATCACCACCACCCAGTACTGATACTGATAGTACCGCATGCCTTGGTCTGTCTGCGTCTGCTACAAGGGAGGCAACCGTCCAATAAGCAGTACAAGCGCCTAGAAGTCCTCCTGTCAGACTCGCCCTCCTAGCCCAACCACTAGCCCCGCCCCAATGCAGTCATTGGCCTGAGCTAGCATCAGCCTCCCCTCCCATTGGACAATATTATTCCCCCGGCCAGAGTGCCTGGGATCTGAGTCAAATGAGCAAACTCTGAGGTATGTTTTACACATTTTAATTTTCAACAGCAATGTGAAGTACAATACTGTGCCACTGGTAGCAGCCAGCAATATTAGACTATAAAACGTCAAATAACCTTGTCAGGTTGCATTCATTTGTGAGAATTGAGAAACTTGAAATGTTTAGTAAAGAGCGAATTTGATCCCATAAATAAAGATTTGTTCAATAGGGGACTCCGATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU929229 lncRNA upstream 4748 52654659 ~ 52654926 (+) True G817021
TU929223 lncRNA upstream 12518 52646934 ~ 52647156 (+) True G817016
TU929195 lncRNA upstream 62635 52596812 ~ 52597039 (+) True G816989
TU929194 lncRNA upstream 63090 52595984 ~ 52596584 (+) True G816988
TU929191 lncRNA upstream 67311 52592050 ~ 52592363 (+) True G816985
TU929442 lncRNA downstream 369830 53033139 ~ 53033358 (+) True G817215
TU929448 lncRNA downstream 374820 53038129 ~ 53038474 (+) True G817221
TU929449 lncRNA downstream 376206 53039515 ~ 53040495 (+) True G817222
TU929553 lncRNA downstream 592002 53255311 ~ 53256967 (+) True G817307
TU929516 lncRNA downstream 604631 53267940 ~ 53268576 (+) True G817278
XM_021616208.2 mRNA upstream 38594 52606443 ~ 52621080 (+) True LOC110532365
XM_021616203.2 mRNA upstream 92149 52550127 ~ 52567525 (+) True vwa1
XM_036988306.1 mRNA upstream 100154 52550127 ~ 52559520 (+) False vwa1
XM_036988304.1 mRNA upstream 145211 52513511 ~ 52514463 (+) True htr6
XM_036988303.1 mRNA upstream 155080 52502997 ~ 52504594 (+) True LOC118936401
XM_036986953.1 mRNA downstream 18202 52681511 ~ 52684202 (+) True LOC110531201
XM_021616211.2 mRNA downstream 29367 52692676 ~ 52734929 (+) False LOC110532368
XM_021616212.2 mRNA downstream 29367 52692676 ~ 52734929 (+) False LOC110532368
XM_021616213.2 mRNA downstream 29367 52692676 ~ 52734929 (+) False LOC110532368
XM_021616214.2 mRNA downstream 29367 52692676 ~ 52734929 (+) False LOC110532368
TU929026 other upstream 334034 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 1313180 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 1580732 51078447 ~ 51078942 (+) True G815610
TU927553 other upstream 1859293 50796214 ~ 50800381 (+) False G815428
TU929242 other downstream 63112 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 2063562 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 2569949 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 2867728 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 3034331 55697640 ~ 55697978 (+) True G820944

Expression Profile