RNA id: XM_021616222.2


Basic Information

Item Value
RNA id XM_021616222.2
length 1973
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110532373
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52854835 ~ 52859251 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACACAttttaaaaagaagaagaagaacgcTGACGTCGACTTCTTCTCCAAAATGGCGAAGTGGACCTCAGACAAGCAAATTAATTGGTGCAGTTCTACTTTGTTGTTAAAAAAACGCACTGTAAGCATGGGTCAGACAAAATCCAGATTGTTGGgaaacaattttattttattcttgATGATATCGTCCATGATGCACATGGCATTGGCTGACGGAAAGACGCTCGTTTTGTTGGACAACCTCAACATCAGAGATACCCATGCAATCTTCTTCCGCAGTCTGGCAGATCGTGGCTTTGACCTTTCATTCAAGACTGCAGATGATCCTTCTCTTTCCCTGATCAAATATGGCCAATTTCTCTATGACCACCTCATCATCTTCTCCCCATCCGTGGAAGACTTTGGTGGCAACATCAGTGTTGAGACAATCACTTCCTTTATCGATGGTGGAGGCAATGTCCTGGTTGCTGCAAGCTCTGATATTGGTGACCCTCTGAGAGAGATAGGCAGTGAATGTGGAATTGAGTTTGATGAGGAGAAGACTGCTGTCATTGATCATCACCATTACGATGTGTCAGACCCTGGTGAGCATACCCTGATTGTTGCTGATCCAGACAATCTTCTGAAGGCTCCCACTATTGTCGGGAACCCCAGTGACAAACCCATCCTCTTCAAGGGTGTTGGCATGGTGGCAGACCCAGATAACCCCCTGGTCCTGGACATTCTGACTggctcctccacctcctactcctaCTTCCCTGACCGACCCATCTCTCAGTACCCCCATGCTGTTGGAAAGAACACTCTTTTGATCGCTGGGCTCCAGGCCAGGAATAACGCCCGAGTGGTATTCAGTGGCTCACTGCACTTTTTCAGCGACGCCTTCTTCAACGCTGCTGTTCAGAAGGCCACACCTGGCTCCCAGAGGTACGCTCAGACTGGGAACATGGAATTAGCCGAGGCTCTGTCCCGATGGGTGTTCAAGGAAGCCGGTGTACTCCGAGTGGGAGCCGTTACACATCATCCTGTGGGGGAGAGCACCCCTCCTGCAGCTTACACCATCACAGACCTTGTGGAGTACAGCGTTGTAATTGAGATGCTGTCCGAGGGCAGCTGGATTCCGTTTGATGGGGAAGACATCCAGTTGGAGTTTGTGAGAATCGACCCCTTCGTCAGGACCTACCTCAAGAAAAATGGAGATAAATACAGCGTCCAGTTCAAGTTGCCTGACGTGTATGGAGTTTTCCAGTTCAAGGTGGACTACAACAGGCTAGGCTACACACACCTGTACTCCTCTACTCAGGTGTCGGTGCGTCCTCTGCAGCACACGCAGTATGAGCGCTTCATCCCCTCAGCATTCCCTTATTACGCCAGTGTCTTCTCCATGATGGGAGGACTCTTTGTCTTCAGCATAGTCTTCCTTCACATGAAAGAAAAGGAGAAATCAGACTAGGGAGATGAAACGTTTCCAGAAAAGCTTATTAAATTaggagggaggggtggtagaTTAAGAATTTGCCTTATTGGGGTGAAGGTTCTTGGTTGCTTAAATCATCTGGCAGAGTCTGCAAGAAGAGTTGGTGAGAATTGAACATGTTGCTTCTCTATTGGTTGTGGGGGAATTTAATGAGGGCTTTGCAGGCAAACTGAGATTTTTTGTAATTCTGAAAATAATACACTTGTGCACAGATAATTTGAGTGATTTATTTTACACATCTCTGAATTCAGTCAGCAATTGGATATGGTTGCTTCACGATCTCAATAACAGATGGAACACTTGTTTGGAAAAATCCCATGAATGTATGTTTTTCCCACCCCCTTGTATGAGGATAAAAACGTCTTGATGCAGTACATGCACtgaatatttttgttttgtctgaTCAAATAGTCTTGCCAATAGAAACACTAACATGTTTGCAACAAACGTTACATAAATCCTTAAACTACAATAAAATGTTGACATTCCACTCTG

Function

GO: NA

KEGG:

id description
K12670 WBP1; oligosaccharyltransferase complex subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU929233 lncRNA upstream 193789 52660742 ~ 52661046 (+) True LOC110532366
TU929229 lncRNA upstream 199909 52654659 ~ 52654926 (+) True G817021
TU929223 lncRNA upstream 207679 52646934 ~ 52647156 (+) True G817016
TU929195 lncRNA upstream 257796 52596812 ~ 52597039 (+) True G816989
TU929194 lncRNA upstream 258251 52595984 ~ 52596584 (+) True G816988
TU929442 lncRNA downstream 173888 53033139 ~ 53033358 (+) True G817215
TU929448 lncRNA downstream 178878 53038129 ~ 53038474 (+) True G817221
TU929449 lncRNA downstream 180264 53039515 ~ 53040495 (+) True G817222
TU929553 lncRNA downstream 396060 53255311 ~ 53256967 (+) True G817307
TU929516 lncRNA downstream 408689 53267940 ~ 53268576 (+) True G817278
XM_021616219.2 mRNA upstream 21757 52816709 ~ 52833078 (+) False LOC110532371
XM_021616220.2 mRNA upstream 21757 52816710 ~ 52833078 (+) True LOC110532371
XM_036988309.1 mRNA upstream 67679 52750213 ~ 52787156 (+) True LOC110532370
XM_021616213.2 mRNA upstream 119906 52692676 ~ 52734929 (+) False LOC110532368
XM_021616223.2 mRNA downstream 365 52859616 ~ 52912527 (+) False LOC110532374
XM_021616224.2 mRNA downstream 366 52859617 ~ 52912527 (+) False LOC110532374
XM_021616225.2 mRNA downstream 1187 52860438 ~ 52912527 (+) True LOC110532374
XM_021616226.2 mRNA downstream 65148 52924399 ~ 52956952 (+) False ano11
XM_021616227.2 mRNA downstream 65148 52924399 ~ 52956952 (+) True ano11
TU929242 other upstream 127315 52726421 ~ 52727520 (+) True LOC110532368
TU929026 other upstream 529195 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 1508341 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 1775893 51078447 ~ 51078942 (+) True G815610
TU927551 other upstream 2054454 50796320 ~ 50800381 (+) True G815428
TU932380 other downstream 1867620 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 2374007 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 2671786 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 2838389 55697640 ~ 55697978 (+) True G820944
TU933965 other downstream 3114791 55974042 ~ 55975316 (+) True G821363

Expression Profile