RNA id: XM_021616224.2


Basic Information

Item Value
RNA id XM_021616224.2
length 5765
RNA type mRNA
GC content 0.50
exon number 19
gene id LOC110532374
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52859616 ~ 52912527 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCGCACGTGCTGGGCGTCGACTTAAAGGCACTCCTTCGATATAAAGTAATTTTTGACAAAGGAAAACGTGTCAatttcacgaggttggagtaataacatgttcaattACTTAAGACGTGggctcgaatctaggttgtgTATTGACATTTATAGAAAATTAACTATAGAATACCCTTTCACTTCTGTAATTGAATTGTTAAATCAGAAACCCCGGTCTGTTCTGCTTGCTCTGTTTCGCAAGCGTTCCCGGAAGCCTCGCGATGTTGCACCTCTGGCTTTAGAGACTGGGTTAGCATTGTCTTGAATATATTCCTCCGGACTAAACATCGAGCTTGTTAACTTGGTCATGGTTTCTACATTTTACATCATAAAGTTGAACTACAACATAAGTTTAAACAAGTTGAGTGCTAACTAACTACAAAAAGTAAAAGTTACCGGCTACGACAGCAGGATATTTACTCCCTACTATCGCTGACGCCAACTAACGTGCTGGCCAGTTCGGTTGACTAACGACGTTAGCCACTCGAACCTTAGTAGGAGGACTAGTATGAGGGAGGACGACGTTGCCAGTCAACGTTATTAGCCATGGCCATGTTGTCTTATGCTAGTTGTTACATTACCTAGCCAGCTCTTTGTTTGATATGTTGTTCGCTTCGCTAGCCAATTATCAGTGTTGAAAATATATGGCTGGCTAGCTTTGAGAACATCGACAGCAGACCACATTGAGACCCCTGGAAATCAGCTGACAGCTGCAGGCAGCCAAGGAGACCAGTCAGTGATGGATCAACTCAAAGTCAAGGACCGAATATTGGAAAACATTTCTTCGTCTGTCAAGAAGTTGCAGAGTTACTTTGCTGCCTGTGAGGATGAAACTCCAGCCATCCGGAATCACGACCGGGTCCTACAGCGACTGTGCGAGCACCTTGACCATGCTCTACTCTATGGGCTGCAGGATATCTCCTCAGGTTACTGGGTACTGGTTCTACACTTCACCCGCAGGGAAGTGGTCCGGCAGGTAGACGAGCTCCAGCACATAGCAACCAACCTTGGGCGAAGTCGTGCCTGGCTATACCTAGCACTGAGTGAGAGCTCCTTAGAAAGCTATCTCCGTCTCTTCCAAGAGAACCAAGGATTGCTGCAGAAGTATTACTTCAAAAATGCATTGGTGTGCAGCCATGATCACCTCACACTCTTCCTCACATTGGTGTCGGGACTGGAGTTCATTCGCTTTGATCTGGAGTTGGATGTCCCTTACTTGGATGTGGCACCCTACATGCCGGAGTACTACAAGCCCCAGAATCTGCTGGACTTTGAGGAGCGCCTTCCCAGCTCTGACAGCCTTTCTCTGCTCTCCTTCACCTCCCTCACCTCTACCAACCTGGAGTGGGACGACAGCGCCATCGCCCCGTCCAGCGAAGAGGGTGACCTCACCGACCCGGTTATCTGTCCTTGCTCCAGCGCCTCAGACCTTCAGACGGTCTTCAAAGATTCTGTGATTCTCCGGGCTGCCATCATGCCAGTGAGGGGAACTTCCCCGCCCCGCAGCCCCACCAGACACAACCCCTTCAACGAGGACTCAGACAACAACACCTCGGCCGACATCACCCCCGTCCACACTGCTAGCCGCCACTCCCACGACACCACCACCACCGTGGACGACACGGAGAGCACCAGCAACGAGCTGGAGGTTATCAGGATGGCCAGACGAAGGAAGCCAGCCAAGAAGCGCCATGTCGTGAAGGGCTCCAGCAACTCCACGGTGAGCAGTGAACAGAACACAGCGGCCTCCGAGCAAGCGGAAGTAGAAGATGGAACCcaggcgagagggggagaggggctgGATGGAGACTCCTGTAGCCCCTCTGTGGGGCCGCCGCAGGGCTCAGGGGCCGAGAcagtgaggagaaggagagggatgggggatgaggaAGGCCAGGAGGAGGATGAGTCAGAGGGTCTCCTGCGGCTGCCGGAGATGACTGACACCTCCATGGACAGTGTGGGCCAGCCCCTACGTGATGTTATGAACCGGCTCAATGGAGCTCTGGACGGGGGGCAGGCCTGGTGGCgaccagacagagaggaagaagatgaggagggggagaagacccATCAGAGTTCCCTCCCTAGAAGGTCCTCCTCTGTCAGCCCTGAAGCCAACTCCCAGCCCCCGGGGCAGCAGCCCTTTCGGGGGGATCCGATTATTGAGCCGCCTGACTCGGAAGCTGGGGCCCCCCTCCTGCGCCCTGCTCTGGCCCCGAGCCCCAGCTTCCTGCAGGCCCCTCCGGCCCCTGCAGACTTTTACTGCTTTATCCCCCACAGTTCAGATGCTGCTGCCACGCGTGGTGGCCACCATGACACTGCAGGGCATGGCCAGCCGCAGGCTCTTCCTGGTGGCCATgaagatgagagagaggcagaggcaccACCAGAACAGGACCCCTTCTTAGAGGAGGCAGGGGTGGTCGAGAATGGATTGCCTGCTGGAGAAACTGAAGAGGACAGGCTCAGTCCAACAGAAAACTCCCATTCTGCAGAATTCAAGGTGGACAACAATCACCTGCTACTGCTCATGATCCACGTCTTCAGAGAGACCGAGGAGCAGCTCTTCAAGATGGTGAGGATGAGCACGGGTCACATGGAGGGAGACCTGCAGCCTCTCTACCTGCTGCTGACTGACTGTTACATCTACCTGCTGAGGAAAGgTGCAGCAGAAAAGCCCTATACAGTGGAGGATGCCATCTCTTACAATGAGTTGGACTATGTCTCTgtgggCGTGGACCAGCAGACGGTCACGCTGGTCTGCACAAACCGAAGACGGCAGTTTCTCCTGGACACATCCGACTCCTCGTTGACTATCTGGTTCCTGGCAGCCCTGAAGTCGGCCATGATTAAGGGGTGCAGGGAGCCTCCTTACCCCTCGGTGCTGACCGACGCCACCATGGAGAAACTAGCCCTCACTAAGTTTGTCTCCCAGGAGTCTCACTGTGAGgttTCTGAAGTGGTCATCCGCCTGTATTCTTTGGTCCACTGGGAGGACCCCATGGATGTGACTCTGGCCCCCCAGACAGCATTGGTGGGTGCTGGAGACTCCTCCAGCACTAAAGAGGGCCCCTTACTCTACAGAGCTGGCACCACCTACCTGGGCAAGGAGCTGTGGAAGAGCTGTTACCTCGTACTGAGCAATGGGAATCTGTACCAGTATACAGAAAAGAGTGATGCGACACCACTGATGTCCATCACTATGGGGGGTGAGCACTGCGGAGGTTGCCGGCGCTCCAACAGCACAGAGCTGCCTCATGCCTTCCAGGTGATCCTCACAGAGCGGCCTCCTCTGGTGCTGAGCGCTGACAATGATGGAGACATGTCCGACTGGATGCTGGTGCTCTGCCAGTCAGTCTCCAAAGGGGTGATCCCCCAGGGAGTGCCGCCCACGCCGTGTATCCCCTGCTGCCTGGTGGTGACGGACAGGGAGCTGCTGACATGCCACCAGGACTGCCAGACCAGCTTCTTCCGCTCACTGGGCGGAGCTGAGCTCTCTGACATTCGTTCAGTCAGCCTGGAGGATGACAAGGAGTATTGTGTTGTTGAGTTTGCATCAGACCGAGCTCAGTTCCTGCCTCCCTGGGTGCTGTACTTCAGTGGCTGTGAAGAGAGAGACCGCCTGCTGGAGGCACTAGAGAGTGTCTGGAGAGACATTTTCCAGGTGTGTCTGCCTCGTAGGAGGGTGTCAGAGCCGTTGGTGCAGAAGCATTGTGGCGATGCCCTGGCTCTGATGAGGAGCGCCTGGCAGAGGAGTGACAGCCTTGCCCGGGGACGCGCCCAGAGAGAGCCCTGGTGCTGACGGACAAACAGACAGGTGGACGGACATATAGGACAAAAGGCTTTCACTAGCACTCCTACGGACCAGTATTTTCTATGAGGATTTTTTTCGATCATTGAATGGCATTTGTTTGGGAGAGTTTTAATGGAATTCACACCAAACCTGTTAATTATGACAATCGCCAAATAGAGGGAAACACACTCCGTTTTGTGTACATCATGAAGATTATAAGTATACGAGGGGTCGCATCATCACCAGAGGTAGCGAGACGAATGTCAGTTTGAATCTCAGTTCACACTCCTGGCCTTCACAAATATCAAGCCTTTCCTCTTGTCATTGAGACAGACGTTAGGGTAGGAAGTGCACCCCTTACCCTATAGAATAAGACGTTGTTCGCAAACAGCTTTAAGGTGTTATTTTGAACCTTAACGACTGCACAACGTTTATAGTGTGGTGTATGGCACAGTATAGTATTGACTTATATTATAATCAATCCGTACTCAAATGTACATTTCCCATCCCTCCATGAATCCAGACATACATTGGTTTCCGCTTATATAGGTTGTCTATTGAAAAATACCTCACAAAACTCAACCCTTCTCTCCAATGCACAGGTTGTGATGGATATTTTGCTCAAGGATCGACGGTCACTTGAAGTGGCCTAAACTATGAAGAATGTCTATGGAGAGTTTACCACTTGGACTGTGACGTTAACAGCACTCGTCTATTGCCTTTGTCAGCCATGTTGGTTTACCATTGTTTTTTTTAGTTATGATGGTTTGGCAGGTCAAAGTCAGTATTGGAGTATCATAGCGGGGAATGGGCTAACCTAGCATGGATATACTTTTAACaagaaggatgagaggagagactaaCTTGCCATCGAATGCGAGATTGCACATTGCTTTTGGGTTTGGTCCATGTTGTTCGATTTTGAGGGGACTGATAAGTTCATTGGGGTTGTGTGCAAAGTTCATGTTCAGTGTTGCGTTTTAATTTTAAGCAAATAGTTGTTTATTTGTAACACGACTTGTTATGGTAGTGTAATTGTGTGCAATTTATAAAGGGGATAAGTTTACTTTaattttattgtttttgttctagTCTTTGTTATTTGAGTGAGTACTCCTTTATCAGGTGAGTGTCTGTCATTGCATTTTTAGATGTTGAGAGTGGCCTGGTCAAGATGTGGGAAGTGTCAATGTCGTTATGTTCTACGTCTGGTGGAGGTATCAGTGCATCCCTACTTTATTATTCTCCCTGTAGTTTTGATGTTGCTCAGAAGAGAAGGTCGTCGTTAGTTATTTCGTCCCATTGGGAGAACACTCAATGAAGTGGTAAAATCGCTGTTGAGACACAACAGACCATTGCTTGTAGTTATACTACAATCAATCAATATGCATTAGGGAAAAAATCTAGTTGACTAGTGATTATACTACTTCATTCATATGATTTGTCATTGCATTAATCCAATTTACCCCTGAAACAATCTATCCCCAACCTCATATTCTATTCATACATAAGTAAACGCAAATCATCCTCACAAATATTATTTTGACAATGTAGCTAATTGCTGATGTAGACATGTCAAAATTCAATTTTTGTGTTGCTATTGGCGAGAGGAGAATTTATCCAATGCCATTGCTATCCTGGAATTGCTATCCTGGAATTGCTCTATCATCAGGAGAAGGTTTCTGGAGGCTTTCAGTGCCCTTAATCATGTGCCCTTTTTCATTACCTTAATTTGATTGGAGATAATGGCCTCAGGCCCAATTTTTACCAAATAAAGTATTACTCTTGAATGTGGCCTTATACTGCTGTTGAGAATTGGGCTTCTGACAAGTCATAATACACACACTGTTTAAGTGTCAGTATAAGACCTATGTGTGTTCCTTGTCTAACCATTGcattatagtaatagtagtaaacATATTCTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU929233 lncRNA upstream 198571 52660742 ~ 52661046 (+) True LOC110532366
TU929229 lncRNA upstream 204691 52654659 ~ 52654926 (+) True G817021
TU929223 lncRNA upstream 212461 52646934 ~ 52647156 (+) True G817016
TU929195 lncRNA upstream 262578 52596812 ~ 52597039 (+) True G816989
TU929194 lncRNA upstream 263033 52595984 ~ 52596584 (+) True G816988
TU929442 lncRNA downstream 120612 53033139 ~ 53033358 (+) True G817215
TU929448 lncRNA downstream 125602 53038129 ~ 53038474 (+) True G817221
TU929449 lncRNA downstream 126988 53039515 ~ 53040495 (+) True G817222
TU929553 lncRNA downstream 342784 53255311 ~ 53256967 (+) True G817307
TU929516 lncRNA downstream 355413 53267940 ~ 53268576 (+) True G817278
XM_021616222.2 mRNA upstream 366 52854835 ~ 52859251 (+) True LOC110532373
XM_021616219.2 mRNA upstream 26539 52816709 ~ 52833078 (+) False LOC110532371
XM_021616220.2 mRNA upstream 26539 52816710 ~ 52833078 (+) True LOC110532371
XM_036988309.1 mRNA upstream 72461 52750213 ~ 52787156 (+) True LOC110532370
XM_021616216.2 mRNA upstream 124688 52696073 ~ 52734929 (+) False LOC110532368
XM_021616226.2 mRNA downstream 11872 52924399 ~ 52956952 (+) False ano11
XM_021616227.2 mRNA downstream 11872 52924399 ~ 52956952 (+) True ano11
XM_021616228.2 mRNA downstream 44513 52957040 ~ 52990201 (+) False LOC110532377
XM_021616229.2 mRNA downstream 44515 52957042 ~ 52990201 (+) True LOC110532377
trnaa-ugc-36 mRNA downstream 81336 52993863 ~ 52993938 (+) True trnaa-ugc-36
TU929242 other upstream 132097 52726421 ~ 52727520 (+) True LOC110532368
TU929026 other upstream 533977 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 1513123 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 1780675 51078447 ~ 51078942 (+) True G815610
TU927551 other upstream 2059236 50796320 ~ 50800381 (+) True G815428
TU932380 other downstream 1814344 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 2320731 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 2618510 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 2785113 55697640 ~ 55697978 (+) True G820944
TU933965 other downstream 3061515 55974042 ~ 55975316 (+) True G821363

Expression Profile