RNA id: XM_021616228.2


Basic Information

Item Value
RNA id XM_021616228.2
length 5434
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC110532377
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52957040 ~ 52990201 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctcatcctatataactactgctgtacacacatttatattcacatactgtccataatgtctatacacatCATTCACAGACACATATACAGTATTATTTATATTCTGGACTCATTTCtggaagctaatttcctgcaattctatcaaTTTTCCTACGTGTTTTTGTACTGTGTACTTACAGTACATATTGTATTCTTGACATAGCTCATTGTAGTATTTATACTATTGTACATTGAATTTTAGttacactgtttatacacaccacatatttatttatatgttgTATTCTTGACATAGGTCACACTAATATTTCTACTGCTCTATATATAATTTCTAGTATATCTTTTGTAAATTCATCCAATGTATACACTGTACTtatagattgcatttggattactgttacagtgctatttTCGTTGTTAATTGGATTCGTTCCGACATTTCTTGATTTCTTCTTGTTCTTTCCGTTTTTTTTGGTTTTTGAAATGAATTATTTGTGTACCTGTTTGATATTTCACTGCATTGTTAGGTGCTactaacataagcatttcactgcacccgcTACAACATCTGCTTGGTTGGATGAATTTGACATTTTTGATCCTccaaatacattttcaaagtGCTAGATACTGCCGTTGTCAAATAAAATCTCAAATATGTTCTCAAATTTCGAAATGCCGAAGAACTTATCTTACCAAAAaatctcctcctcccttcctccccactcGCTCGGAAACATGACCCCCTCAGAAAATGAGAAATCCAGACAGATGAAACCCCTCTGATTTAttaggagtcagagagagacaggtgttcTGTTAAtgatttctctccctcctttccctcttctCCTACGCACCCTTCCAAAATATTCCTATTGCCTTgggcaactctctctctctctcgccctgtctcttttctctctctctcgccctctctctctactgctgtaGCGTTCATGTTTTGATTGTTATGATTGCTGTGAGTGTGTTCCTTTGCCATTCAGCCTGCAGGAAGTGTGCGCTAGTACATGTCAACTAGTGGAGGCAGGTATGCAACGTGGACAGGGCCTCCAACAGAcactgtgtgtgtcccaaatggcaccatattctatatactgtagtacactacactacttGTCAAAAGTCATGCATGATGTAGGCAAtaaggtgccatttaggacagagACACTGTACTAATAGTTCTCCCCTTATACCTCAACACCACACTTAACAGAGCAGGGAAGCACTCAAAGGCAGGGAGTGAGAACCCATAACACCACCCAATGGTATTCAGTTGAtgtgttgattgaaaagtgtcaACTTGTCATTTATCCACAAACAAGTTGCCATTGTAAGATTGAATGTACAATATTGAGTAGTTATGAAAGCACATCAACTGCCAACTAGAGACAGAATTTATATGATTGATTTCTGGATAATTGTTAGACATCATGAAAATAAAACTCAGAAAGTCAACTTCAAAACACATCAGTGTTAactgttgttttttaaatgtttaattacGGAGTTACAGTGCTAGAGAGGTAGAAGCCAAGGAGTTCAAGCATGTCTTGCAGATACTTTCTTTCTGCAAACTGATATTTTTCTACCTacttaattacacacacacacacacacacacacacacacacacacatgcctgagCACACACACTGTCTACTTCCCACCCCTTTCCCCCTCCTACCTGCCTGCTATCCACTTGCAGTACATTTTTGTTGACACACGAGAATCCGAcccatgcatgcatgcatgcacacacacacacacacacacacacacacacacacacacacacagacacactctcacacatactCACAGAGAGGAAATATTTTTCACTCACGCAGATGGCTGCTagctcactcctctctccctctctttctataagCAGGTGTTAATATGCAACACTAAACTATTATAGACcaacaaagagagaggagagggaggatagaaagAATAGGAGAGAGTGCACTACCCCAACAgtagcagagggagagaaagagagcgagaaggattgtgagcaaggagagggagagcaaaAGCTTAAAGAGGGATCTGCATGGTAAGTAGCCAGAAGAGCGAAcacttaaaacattttttttaaacagctttttggtggagaaggagaagagggataCAACGGAGGAGTCTGGACCCTGTCGACCAGTTCACTTGCCTGGGCACACTGGTCTTCAGACGAGTGGAGTAAAAAGTGAAGGAAAACGACTGAAGGGAAAGAAGCCGGGAGGAACACAAGGCAGTCATGGATAGCACATAGAGGCTCAGCCAGACGCTAGGATGGCCTGGATTCTCACACTGTCGCTGGCAACCGTCCAGCACAGAAGCTAAAGATACTCATGAGCTCTCATGTGTTCTCTCAGTCATGCTTCCTGGGTATGGATTCTTCCCTCTCCCTGACTTCCAGCCTCATCTACACGCCTTCCGTTTCCGAGGAAAGAGCCCCATTATGTGGATCCCTGTCTCAGGTGAGTCCCAGGCTTTGAGCGAGGCCCCGGACGACATGCCTCTCCTCCGGCAGTGCCACCACAAGCACATCGCTGTGTGTCAGCAGGAGACTCTGACCTTCATCGAGCTGCAGCCGCCTGTGACACCCAGCGTCAAAGGCTGGGGCTCCCCAACTGCAGACACTCAACGCTTCAGCCAGTTGTCTCTGAATCATCCTAAACACAGGAGTGAAGCACAAATTGGCAGTGGGAGAAGTGATTATTACACTGATTCTAATACGGACCTGAGTTTAGACTCTCCGACGCTAGGGGGCGAGGTTGAGCTGGTTATCCAGGAAGATATCAGGACCAACCCTCCAGTGCAGGAGCAGTATGAGAGACCCATGACGGTGTCATCTGTGTTTCTTCCCCTCCACGCAGCCCTCAGCCtgcccctgtccctccctctgtcctccctgtaCAGAGACACAGACTCCTGGgactctcagccacctggctctccatcctctcctgagCTTCCGTGGCTGCAGAGCCCAGATACCTGTCGACCCCAGAGGAGATCATCACAGAGCTCCCTCAGGGAAAAGTCCATCCGGCGTAAGGTGCGGGTGTACTCACCAGACAGCCTAAGTGACGAGTCTCTGGCCAGCCCCATTCTGGACGGCGACTACCTTTTCCCAGGACCCTTTGACTTCTTTCTGGAAGAGGACCTCAGGGGAGACCCTGAAGACGCCACGAGTCCCTCATCAACAGGGGGTGCCGTAGACCCCCAAAACCCCAACCCTCCAAAGATTCCACCTCTGTCCTCAGAGCCACATCAGTCGTCAGAGGACTCCTCTGTCTTGAACTCTGGGGCTGTAGAGAATTCCTCGGCCACCGGGGGGAGCACTTTAGCCTGCTCTCGTATGGTGGAGCACGAGCGGCGGCGCTTCTCTGCCTCTGAGCTGATCTCACGGCTGCAGCTGTCCCAGAGGAAGAACTCGTTCACGCTAAAGCTAGGCAAGTCGCTGTCGGCTCGCGTGGCTTCCCGTGACAGGCAGACCTCCAGCAACCTCAGCCCCAGCTCTGACTATAATTCCACTTCCAGGCACTGTGGCTCAGGTGGTTCCAGTCACAGCGCCCCCCACAGTCCTGTAGGACCTGTACCGCCACTACCTACTGCTGACAATAACACGCAACAACATCGACGGAGCACTGGATTCGCAATCAAAAATATAAGGAAGAAATCCATCGAGGAGGATTGGTTTACTCCTCCCACAGTCAGCAGCTCCAATCGTCTGTCACGGTTTCTCCCCAGCTcAATTCTGTACCAGGAGTACAGTGATGTTGCAATCAACCGAGAAATCCAGAGGCAGCAGGGGGAGGAGCCAGGTGCTGAGGAGGAGAGGCTAGGGGTAGAAGGGGCTGGGGAGGCCCCATCTCCGTCCAATCTGTCTCCGTCTAGCTCCTTTTGCTCGTCACGAGGCTCCGCCTTCTCCCTGTGGCAGGACATTCCTGATGTCCAGACCAGCGATCAGCTGGACAACTTCAGCAACGAGGAGCGCAAACTACAGGAGGCCAAGTTTGAGCTAGTGACATCTGAGGCGTCGTACATCCGGAGCCTGGCCATCGCGGTGGACCACTTTATGCTGTCCCAAGAGCTGGGGGAGTGTCTGGGGACCCAGGACAGACAGTGGCTCTTCTCCAAGCTCCCCGAGGTCAAGGACGTCAGTGAGCGGTTCCTGCAGGACCTGGAGCACAGGTTGGAGGAGGACATCTTGCGTTTTGACGTATGCGACATCGTCCTGGCCCACTGTCCCGCCCTGCGAAGGGTCTACCTCCCTTACGTGACCAACCAGGCCTACCAGGAACAGACCTACCAGCGCCTGTTACAGGAGAATGCTCGCTTCCCAGGTATCCTGGCTCGTTTGGAGGAAGACCCCATCTGCCAGCGTCTTCCCCTTGCCTCCTTCCTCATCCTCCCCTTCCAGAGGATCACACGGCTTAAGATGCTGGTGGAAAATATTCTGAAGAGGACAACACCAGGCTCTAGGGGTGAAGACACAGCCACCAAGGCCTTCAATGAACTGAAAAAGCTTATAAAGGAGTGTAACTCCAGTGTGCAATCAATGAAGAGGATGGAAGAGCTCATTCACCTCAATAAGAAGATCCACTTTGAGGGCAAGATATTCCCTCTGATCTCCCAGTCTCGCTGGCTGGTCAAACACGGGGAACTGCTGGAGGTGGACACACAGACCATGAGTATTTCTGGGTCAAAGTTCAAGTTGCCCACAAGGCCTGTTTATCTGCATCTGTTCAATGACTGTCTTCTGCTGTCCAGGAGGAAAGACACGTGGAAGTTCATGGTGTTTGTTCACGCTAAGATTGGGCAGCTGAAGGTGAAGGACCTCAGTCAGAAGCTCCAGGGCATCTCAGGCTTCATCTTCCACCTCCAGCTGTGTGAGGGCCAGCAGCTCAAACACCAGATCCTGCTCAAGGCCCACACTGAGAGTGGGAAACAAAGATGGATCACAGCCATGTTCCCCTCTGATCCATTGGAAGACATTGAGCAGGCCAGTGAGAATGATGATCTTTCTCAAGTTCAGTGCATCAAGAGCTACCAGGCCCAAGAGCATGACGAGCTAACATTGGAGAAGGCTGATATTCTTCAAGCCAAGACCATTACAAGTGACGGCTGGGTGGAGGGCATTCGGCTGTCAGATGGGGAGCGGGGCTGGTTCCCCAAAACCAATGTAGAGGAGATCACAAATCGCAGTGCGCGTCTCCGCAACCTCAGAGAAAACATCCGCATCAAGTGTGTCACACAGAAACTGGAGGAGGAGCTCTTTTAAGTGTCCTCTCCACCCTGCGGCTTTTAACTTACACTTGGAATGTCCAATCGTAATGGTGTAATAACTCTCAACCCCAAACATCTATAAGTCCCAGCTTTTACGCAACACCAGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU929233 lncRNA upstream 295994 52660742 ~ 52661046 (+) True LOC110532366
TU929229 lncRNA upstream 302114 52654659 ~ 52654926 (+) True G817021
TU929223 lncRNA upstream 309884 52646934 ~ 52647156 (+) True G817016
TU929195 lncRNA upstream 360001 52596812 ~ 52597039 (+) True G816989
TU929194 lncRNA upstream 360456 52595984 ~ 52596584 (+) True G816988
TU929442 lncRNA downstream 42938 53033139 ~ 53033358 (+) True G817215
TU929448 lncRNA downstream 47928 53038129 ~ 53038474 (+) True G817221
TU929449 lncRNA downstream 49314 53039515 ~ 53040495 (+) True G817222
TU929553 lncRNA downstream 265110 53255311 ~ 53256967 (+) True G817307
TU929516 lncRNA downstream 277739 53267940 ~ 53268576 (+) True G817278
XM_021616226.2 mRNA upstream 88 52924399 ~ 52956952 (+) False ano11
XM_021616227.2 mRNA upstream 88 52924399 ~ 52956952 (+) True ano11
XM_021616223.2 mRNA upstream 44513 52859616 ~ 52912527 (+) False LOC110532374
XM_021616224.2 mRNA upstream 44513 52859617 ~ 52912527 (+) False LOC110532374
XM_021616225.2 mRNA upstream 44513 52860438 ~ 52912527 (+) True LOC110532374
trnaa-ugc-36 mRNA downstream 3662 52993863 ~ 52993938 (+) True trnaa-ugc-36
XM_021616232.2 mRNA downstream 52876 53043077 ~ 53121864 (+) False LOC110532379
XM_021616231.2 mRNA downstream 60109 53050310 ~ 53121864 (+) False LOC110532379
XM_021616233.2 mRNA downstream 99029 53089230 ~ 53121864 (+) True LOC110532379
XM_021616246.2 mRNA downstream 138237 53128438 ~ 53154128 (+) False LOC110532383
TU929242 other upstream 229520 52726421 ~ 52727520 (+) True LOC110532368
TU929026 other upstream 631400 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 1610546 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 1878098 51078447 ~ 51078942 (+) True G815610
TU927551 other upstream 2156659 50796320 ~ 50800381 (+) True G815428
TU932380 other downstream 1736670 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 2243057 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 2540836 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 2707439 55697640 ~ 55697978 (+) True G820944
TU933965 other downstream 2983841 55974042 ~ 55975316 (+) True G821363

Expression Profile