RNA id: XM_021616232.2


Basic Information

Item Value
RNA id XM_021616232.2
length 6162
RNA type mRNA
GC content 0.51
exon number 19
gene id LOC110532379
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 53043077 ~ 53121864 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGTGGTATGGGCGGGTCATGGCTAGaggggatacagcttttgtcaaattaaagTCAGATTTGATTTTCCGTAGCAGGTTAGGAGTCCATGATCATAGACACCGTTATGGAATTACACGTTAACACAGATTCAATATTTGGAGTCAGtCACCCCTGATCTGGTCCCGGAGCCCCTGGTTCCACCTGTGGTGCCTACCCTGCCCTCGGCGTGGGTCCGGCCTGCCCTGCACAGGCCCCGTAGGCGCAGCAGCAGCGGCAACAGCAGCGGAGGCGACCCCACCAGGCCGTGCCCCTCAGGCCTGGCAGGCCCCAGAGGCAGCATGGAGGTAGGCATGCGTGTGGTGCGTGGCCTGGACTGGAAGTGGGGGAACCAGGATGACGGTGACGGCCACGTGGGCACGGTGGTGGAGATCGGGCGGCAGGGCAGCACCACCACACCCGACAAGACGGTGGTGGTGCAGTGGGACAGTGGCACGCGCACCAACTACCGCACAGGCTACCAAGGATCCTACGACCTGCTGCTCTACGACAACGCCCAGATCGgTGTGCGCCACTCCAACATCATCTGTGACAGCTGCAAGAAGCATGGCATCATGGGGATGCGCTGGAAATGTAAGGTGTGCTTTGACTACGACCTGTGCACGCAGTGTTACATGAACAACAAGCACGACCTGGGCCACGCCTTTGAACGCTATGAGACCGCCCACTCCCAACCAGTGTGCTTGGCCCCAAGGCAGAATCTCCCACGGATCATCCTCAAAGGAATATTCCAGGGGGTGAAAGTGGTACGCGGACCCGACTGGGACTGGGGAAACCAAGAcgGAGGAGAGGGTAAGGTTGGGAAGGTGGTGGACATCCGTGGCTGGGACACAGAGTCCGGTCGCAGTGTGGCCAGTGTCACCTGGTCCAATGGTACCACCAATGTCTACCGAATGGGTCACAAGGGCAAGGTAGACCTCAAATACGTGTCTGACGTCCAGGGAGGCTTCTACTACAAAGACCACCTACCAAAGCTCGGTGAGCACGCAGAACTGCAGAGGCAGGAGAGTGCAGAAGGCCACACCTTCAACCAGGGGGACAAGGTGAAATGTCTCCTGGAGGTGGACATCCTCAGACAGATGCAGGAGGGCCACGGAGGGTGGAACCCCAAAATGTCAGAGtacACCTGCAGAATCGGGATGGTACACAGAATCACTGACCGGGGAGATGTCCGAGTCCAGTACAGCAACAACATCCGCTGGACCTTCCACCCAGGGGCCCTAACCAAGGTGAACACTTTTGGTGTGGGCGAGCTGGTGCGAGTGCTGGAAGACATAGACAGTGTTAAGAGGCTTCAGGCTGGCCATGGAGAATGGACAGACAGCATGACACCCgCCCTGGGGCAGGTGGGCAAGGTGCTGAAGGTGTACGCCGACGGGGACCTGCGCGTGGCCTTCAACGGCCAGACGTGGACCTTTAACCCGGCGTGCCTCTCTGCCCAATCCGTGGAGGTGGACGCCAACCTCATGACGGTGGAGAACCCCAACGTATCCGGAAacaCAGTCATTTCAGTCCTGGAGAAGCTGCTGTCTCAGTCTACAGATCAGGACAACCCCAGCCGGCTGGTCATCGAGGCGGCGCATGGCAGTGCCAACAAAGTCCGAGAGCTTGTGCAGAAATACCCTGACAAGGTGGATATAAAGAACCAGGGCAAGACGGCGCTGCAGGTGGCAGCCCACCAGGGCCACATGGAGGTGGTCCTGGCTCTGCTGCAAGCCAACAGCTCCATTGAAGTGAAGGACGAGGACGGAGACACCGCCCTGCACTACACGGCCTTCGGgaaccAGGCGGAGATTGCACGGCTATTGCTGAGCAAAGGGGCCAAGGTGAACCTGCTGAACAACTCCATGTGCACAGCGCTGCACATAGCCGTCAACAAGGGCTTCACCGATGTGGTGCGTGTGCTGTCGGAACACTCAGCCGACATCAACCTACAGGACTCGTACGGAGACACACCTCTGCACGACGCCATCGCCAAAGACTTCCGTAACATCATTGAGATCCTGGTTGTGGTGCCCAACATAGACTTCACCCAGCAGAACCACCGCGGCTTCAACCTCCTGCACCACGCAGCCCTCAAAGGCAACAAGCTGGCCACGGAGAAGATCTTGGCTCGGGCGCGTCAGCTGGTGGATGTCAAGAAGGAGGACGGCTTCTCGGCTCTGCACCTGGCCTCCCTCAACAACCACCGAGACGTGGCCGAGATCCTTGTAAAAGAGGGCCGCTGTGACGTCAACATCCGCAACAACCGCAACCAGACGCCGCTGCAACTGGCGGTGACGCAGGGCCACGGGGACCTGGTGCAGCTACTAGTGGTCGAGGGCGCGGACGTCAATGTGGAGGACGAGGATGGGGACACGGCCATGCACGTCGCCCTCAGCCGCCCGCAGCTGGCCAACGCCACGCTCACCCCCGCCACCACCAGCACCACGACCACCacgcaggagagaggagaggggggtccGGGCTCGTCATCATCCTCGCTGTACTGTCAGCTGAGCAGCTCGGGGCTGATGGGTAACACGGAGCTGAGCGTGGGCGCAGCCATTGCCTGTTTCCTGGCACAGGAGGGCGCCAACATCAACTACGCTAACCACAAGGGCAAGAGCCCGCTGGACCTGGTAGCTGACACAGCCGTGCTGCAGCTCATCAAGAGCTTCTCTGAGAAGCAGCGGTTGCAGCGGCTGCAGGCCATCACGTGCGGCACGTCACTGAGCAGCACCAGCCTGCGGCGGGTCCACACCACGCCCAATACCATGACTAACCTGGCCATGCCCGTCCTGCCGGGGCCCAGCGAGTGTCTCATCTGCTCCGAGCTGGCGCTGCTCGTCCTCTTCTGCCCCTGCCAGCACAGCGTCGCCTGCGAAGAGTGTGCTCATCGAATGAAGAAATGCATCAAATGCCAGGTCACGATCACCAAGAAAATAAGACAAGaccagacAGAGGTGGACTGCAGCCCGGACTCGGAGCAGCACAACCTGCTGGAGCAGCTACAGTCACGCTACCGCCAGATGGAGGAGCGTATCACCTGCCCCATCTGCATCGACAACCACATCAAGCTGGTCTTTCAGTGCGGCCACGCCTCCTGCATCGACTGCAGCGCCGCCCTCAAGACATGCCCCATCTGCAGGCAGACCATCCGCGAGCGCATTCAGCTCTTTGTCTGACCCAGGCCCCCGTCCTCCGCCTCCTttctccccccccaccccccatgaaGTGGCCCGGGGGTGGTCAGCTTGTTGCCCGTTTTCTGCTGGTGTCTGTTAGTCGGTCAGTCTGCGTCTCAGTCCTTTGGGATAAGCCACTTGCTCATCCATCCTGGCTCAGCCACTGCGCTTTGTTGTGTTCTGTTTCATGAAGTTGCGccaggggtgtaatcattacgccgattctgttgcaaaacgttttgccacAGAAACTGTTTACTCAAAACAGAAAAACACAAATTAGAGTTTCTATTGggcaaattcaggtaggtccctccgtGTTTCGTTCCATTTGCTTTGTTTGCTTCCATTTTGTTCTTAAAGAGTAAACGGTttccgtaatgaatacaccccagggttTCCAGCAGTATCACATAGCTGGATATGGTCATACTGACTAgatttagttttttttgttgcccaTTTCTGCATGGGAAAAAATCCATCCACTACCCCTGAAAGGCTCTGCAATGCTTTCTCCGTGGCCCCCAGTAACCAGCAACCACAGCCGGTTACATCAGGAGGAGGTGGTTGTGCCGCAAGCTCCACTCATATTGGTGAACAAGGAGGATGTCCCTACGAACCAGGGAGGATGTCCATCTGAATAGGCCCTCACCTGTGCTGCTCTAAGAGGAGGTCTGTTATTCCCCATTTGATTGCACCCCGTTTGCCTGTCTTACCTCCCCTGTTTACAAGGCTGCAGAGAACAGTCCATCTCCCTGTCTTGAATCCTGTGTATTATGTTTGCTCTCCTTCATATGAAGCTGTTTGTAATAAGTGTTAGTCTCCAGAGGGTGATGGTATAACTAAAGGCTCCTCTGTATAGCCCTTCCCGCTTGCCGTACATACGTAAGAGGAAAATACACACTATATGCATGAGTACATGCATATTCTAAGCTGAAGACTTTGTTGTGGATTTGGTTACATGTGTGGTTTTAAGAGTACCAGTAATTAGTACTGAGTTATTAATGTCTGAAGGTGTTTCTATTTAGCTAAAGTCATATTATTTTTGGTGTTTGATCTGCAAAAAAAGGATTTCTGCTGTAATTTCACCCAAGCCTATGTCCTTCTCTACTCAGGGTCCTGATTCATTGAAACACTTCTAGTATCAAAAGGGTTGtggaatgttttgtttttgtcaaatgttttTACATTAGAGCCTTCTGACAATTTGGTGTGCATTTTCTAAGGGACTTGTAGATATCTGGTAAAACAACAGCTTGGACTGTTTTATAGCAGAATAGACGTGTAGATGAGTTCACTTCAGCCCAACATACCGTTCTTGCTTTTGGTATGAAATGAATGTTGAAATACACCATAATAGAGAGAGGTTTGCGTGTTGCTTTAAAAGAAAGGAAATACTTATTTGTCTGCTGTCGCAGTGGCAGTGCAAGTCATTTTCCTTATACCATCACCCAGATACCTATTGTTCTTTGTAGATTTGTATAAAAAGCATGAACGAAGCCCGTGTCTGTTGTTGTCTGAACCTGAGCGCCTCTGTCCTTCTCCTCAGCGTGTAGCGTAGCGTTGTACTGCCCAGCAAGTGCGTTAGCTGCCCATCCGCTTGCTAGTATCATCACACTCAGCTTCAGACAGAGCTCAGCCAATTGGGTGGTGCAGAAAGGTTTGTCATTGAGTTTAGGTCGACTTTGGACTCTTGCGGACAGAATTACCTTTGATTTCTGGAAGCCTTGGTGTCCTTTGGATAGAGGAAGATAACTCCTCCAATACAGAACAGAAAGGATTATTGGTCAATGGAGGTGGGTAAACTTCTATAAAAGCTGAGCCAGAAAAATTATGTATATGCTTGTTCTTTATTTTGTCACAATGTGGACTTTTGGCAGCCTTTGGACTCttgtaatgtatttttttctcaaaCAGTAAACATTGAATTAGACATGGCAACAAAAAAAGTGGAACTGCACATCTGTAGTTCCGTGTCTCGCATCATATTCAGCCTACTtagaagaaccccccccccccagtctgttTGGCAAAGCATTTTGGATTGTACATCATCCTTTGTATTTTTTGGTTTGTTTTCCAAAGGGCTTATGTGTTTTTAAAAAATTATCTATTTGATTTTTCTATTGTTAACTTCCATTGACAGGGGTTTGTAGATCCCAGCTTTCGGTAAGCCAATTAAGATGTACATTTTGAATGTTAGAAAAAATGTAATCTGTCTTACTCTGCCTTTTTGTGGAAAGGTTGTAAAGATGTGAGAGAGGGCACAAGCGGGGGAAAGTAAGGTTTACTCTAAGAAGTACTACTACACCAGTGCCAAATCTTTAAAAGGATGTGCACAGGACTGCACAGCCTAGTTCATCTAGATACAATGCTCTAGCCATGATCAATGTTTTGAAATAATTGAATAGCACTATTGTGGCTCCCAATGATGATTTTGTCTCAAACTATCATAGCTATGTACTATTTGGGCAAAAGAGCAAGAGCATATTGTGAGTATGCTGTAGGGTactaaaaaagtagtgcactacatggggaatagggtgtcatgagACTGCACCCATTCCCTCTTTCCCAGCTTCTCAATGACAACTGATattaaagaagaagaaagaaaaatTGGAGCCAAAACTTTATAATTTTAATGAATCGAGAGAGTCTTTATGATCATTAAAGATTGGCATCTGGTGTCCTACATTGGGTCATGTGAGTATTCTCTGTACACAGGTAATAATTATTATTTAGGAGAGCCAGGAGGTTTGGAAATGTACTACTAGAGGTTTGCTATGAGAACTACATATACTATTTAAGCAAGAAATGTTACTATTTGTGTGTACAGCACTTGGAGTTCTGATGTTGGCCTTACTGTCCATTCCTCCAACGTTGACGTGTTTGTTCAGTTGTATTCTGTCCGAAAATATTTTGCAATAAATATGGAACTGTTTTATAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU929449 lncRNA upstream 2582 53039515 ~ 53040495 (+) True G817222
TU929448 lncRNA upstream 4603 53038129 ~ 53038474 (+) True G817221
TU929442 lncRNA upstream 9719 53033139 ~ 53033358 (+) True G817215
TU929233 lncRNA upstream 382031 52660742 ~ 52661046 (+) True LOC110532366
TU929229 lncRNA upstream 388151 52654659 ~ 52654926 (+) True G817021
TU929553 lncRNA downstream 133447 53255311 ~ 53256967 (+) True G817307
TU929516 lncRNA downstream 146076 53267940 ~ 53268576 (+) True G817278
TU929623 lncRNA downstream 272045 53393909 ~ 53426571 (+) True G817374
TU929796 lncRNA downstream 550772 53672636 ~ 53676213 (+) True LOC110532391
TU931121 lncRNA downstream 570409 53692273 ~ 53692710 (+) True G818719
trnaa-ugc-36 mRNA upstream 49139 52993863 ~ 52993938 (+) True trnaa-ugc-36
XM_021616228.2 mRNA upstream 52876 52957040 ~ 52990201 (+) False LOC110532377
XM_021616229.2 mRNA upstream 52876 52957042 ~ 52990201 (+) True LOC110532377
XM_021616226.2 mRNA upstream 86125 52924399 ~ 52956952 (+) False ano11
XM_021616227.2 mRNA upstream 86125 52924399 ~ 52956952 (+) True ano11
XM_021616246.2 mRNA downstream 6574 53128438 ~ 53154128 (+) False LOC110532383
XM_021616247.2 mRNA downstream 6583 53128447 ~ 53154128 (+) True LOC110532383
XM_021616249.2 mRNA downstream 81117 53202981 ~ 53214762 (+) False LOC110532385
XM_021616250.2 mRNA downstream 81117 53202981 ~ 53214762 (+) True LOC110532385
XM_021616262.2 mRNA downstream 283041 53404905 ~ 53425693 (+) False LOC110532390
TU929242 other upstream 315557 52726421 ~ 52727520 (+) True LOC110532368
TU929026 other upstream 717437 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 1696583 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 1964135 51078447 ~ 51078942 (+) True G815610
TU927551 other upstream 2242696 50796320 ~ 50800381 (+) True G815428
TU932380 other downstream 1605007 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 2111394 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 2409173 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 2575776 55697640 ~ 55697978 (+) True G820944
TU933965 other downstream 2852178 55974042 ~ 55975316 (+) True G821363

Expression Profile