RNA id: XM_021616250.2


Basic Information

Item Value
RNA id XM_021616250.2
length 1597
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110532385
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 53202981 ~ 53214762 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATACACTTGTAAGCGGAACTGTGGCGTTATGGTTTGCACACCGCCATTAAAACTCAAAAAAATATGTGGCGTGAATACGTTTGAATTTAGCAGCCAATGTGGGCCTGCTTGCTGagatgtagaaacatcaagaACACGATTATCTAGTTACTATTTCACTTAAAAATGGAAGAGATACGTCCACTGTTGAGCAATCAGCCTTGGGAGGGCTCAGATCTCCCATCCCCAAACCTGAGACCAAGGCACCAGGAACTGATCCCAACGCCATGTGGCCCGATAAAGCCTTGGTCAGAGCTGTCATGCTTGGTGAAGCTTTACTTCTGCTTCACCATCGCCTCTCTACTGGCACTATTGGCCCTCACACTGACAAACATCTACAGGCAAAGCATGGCAACGTACAGCTATGAGGACGACTTCACTGTATCTCTCATCCAACTGGTTGGAATTTTGTTCTGCATATACTACATCACCAGGGGAATCCTGCAGGAGAACAGGCAGGAGTTGATAGTGTTTGTCCTCAGTGTGTTGGTGGTCATGATGCGCTCTGTGGTCAACTTCATGGTGCTCCCTCTCCAGGATAGAAAGGACCTGCTTCTGCTGTGCCTTTGCATACTGATTATGACGTCAGGTACAACTATGTCCTTCACGAACAGCATCATCCTGGGCTTTGGAGTGGTCTGGGCCTGCCTTACCGCAGCCATGGGGGCTATCGCAGTTTTAAAAGAAACCAAGCCGCTGGTTTGGGTCTTTGTTCTTCTTAATGTGCCGGAGGTGGCCTACTTCGTGTACCTGATGTACAGGATCAGTGTACACTGGGGGCAGGATAAGACGTATACACTGGAGGCCGCTGCTGTGACTGGAGCGGGGATCTCAGTGCTGATCAAAGGCGTGCTTTTCTGGTCTCTCTTCCGATTGGCGCGCAGCTTCGGCCAGGGcctgagggagaggatgTTTTCATCGGACAAGCAGTAAAGTGCCGTCATGAGAAGGAAGTGGCTACGGTTACACAGGATGGATAAGCAACAATTTCTACATTTTGTAACAACTCTCTGGCTCTGACCAATGTTTGAAGTTAGGAACTAGAGGGAAATGCACTCAAATGGGCATTGGACCGGTCTGTTTTTACTGAAGATGATTTCACTgcaagtgccttcggaaagtatttagacccctttactttcccacattttgttacagccttattctaaaatgggtgaaataaaaaaataaaaatcctcagcaatctacacacaataccccataatgacaaagtgtaaacaggtttttagaaatgtttgctcatttataaaaaataaacatcttatttacataaatattcagacccttttctataaGACTCGAAATTTAGTTCAgatgcgtcctgtttccattgatcaaccttgatGTTTTGACAActagattggagtccacatgtggtaaatttgGATATGGAAAGGCACATGCCTGTCtagataaggtcccacagttgacagagcaaaaaccaagccatgaggtcgaaaaaATTGTCTGtacagctccgagacaggactgtgttgagacacagatctggggaagggtaccaaaaaatgtctgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU929449 lncRNA upstream 162486 53039515 ~ 53040495 (+) True G817222
TU929448 lncRNA upstream 164507 53038129 ~ 53038474 (+) True G817221
TU929442 lncRNA upstream 169623 53033139 ~ 53033358 (+) True G817215
TU929233 lncRNA upstream 541935 52660742 ~ 52661046 (+) True LOC110532366
TU929229 lncRNA upstream 548055 52654659 ~ 52654926 (+) True G817021
TU929553 lncRNA downstream 40549 53255311 ~ 53256967 (+) True G817307
TU929516 lncRNA downstream 53178 53267940 ~ 53268576 (+) True G817278
TU929623 lncRNA downstream 179147 53393909 ~ 53426571 (+) True G817374
TU929796 lncRNA downstream 457874 53672636 ~ 53676213 (+) True LOC110532391
TU931121 lncRNA downstream 477511 53692273 ~ 53692710 (+) True G818719
XM_021616246.2 mRNA upstream 48853 53128438 ~ 53154128 (+) False LOC110532383
XM_021616247.2 mRNA upstream 48853 53128447 ~ 53154128 (+) True LOC110532383
XM_021616232.2 mRNA upstream 81117 53043077 ~ 53121864 (+) False LOC110532379
XM_021616262.2 mRNA downstream 190143 53404905 ~ 53425693 (+) False LOC110532390
XM_021616261.2 mRNA downstream 190157 53404919 ~ 53425693 (+) True LOC110532390
XM_021616263.2 mRNA downstream 381321 53596083 ~ 53673498 (+) False LOC110532391
XR_005053294.1 mRNA downstream 1016987 54231749 ~ 54233447 (+) True LOC118966073
XM_021616266.2 mRNA downstream 1020034 54234796 ~ 54239506 (+) False LOC110532392
TU929242 other upstream 475461 52726421 ~ 52727520 (+) True LOC110532368
TU929026 other upstream 877341 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 1856487 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 2124039 51078447 ~ 51078942 (+) True G815610
TU927551 other upstream 2402600 50796320 ~ 50800381 (+) True G815428
TU932380 other downstream 1512109 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 2018496 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 2316275 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 2482878 55697640 ~ 55697978 (+) True G820944
TU933965 other downstream 2759280 55974042 ~ 55975316 (+) True G821363

Expression Profile