RNA id: XM_021616261.2


Basic Information

Item Value
RNA id XM_021616261.2
length 2446
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110532390
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 53404905 ~ 53425693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTGCTGCGAAAGTGGAGTGCAAGAGTGCGCTCCAGTAATCGACTGTTGTGGTCTGACCAACGAGTTGACACCGTGCGTTCTGTGTGCTGGGCCAGGACAGGGAGGAAGCCAGGCGCGCGTGTGTGAGCAGAACATGGGTCATCACAACAAATTACTTTATTCCGATCTTCCTCCGCATTATGGGACCGTAGGAACGCAGTCTGTGTGAGCCCCTTCGGTTTTTTGATAGGTTTTGGTTCTGGGAACTTTGGCCAGCCATAAAAATGGAGATGTTAACTTTCATGTTGGCGAACCTTGCCCTCTTGAATATCAGGGGCAACATTTTCACCAGGGCCGAGCTGAGTGACATTGGGGACTATGTAGGTTCAGACATACAAATATCCTGGTTGCCTAATCTGGATGAGTTAATGAAGGGCTATGCACGAAATTTCCGCCCTGGGATAGGAGGCCCACCTGTGAATGTTGCCATGGCTATTGAAGTAGCCAGTATTGACCACATCTCTGAAGCCAACATGGAGTACACCATGACCATTTTCCTGCGGCAGAGCTGGCGGGACGACCGCCTGTCCTACAACCACACCAACAAGACCCTGGGGCTGGACAGCCGCTTTGTGGATAAACTCTGGCTGCCCGACACCTTCATTGTCAACGCTAAGTCCGCCTGGTTCCACGACGTCACTGTGGAGAACAAGCTGATTCGCTTGCAGCCTGATGGGGTCATCCTTTACAGCAGCCGGATCACCTCGACTGTGGCGTGTGACATGGATCTGACCAAGTACCCCATGGATGAGCAGGAGTGTATGCTGGACTTAGAAAGCTACGGCTACTCCTCAGAGGATATTGTGTACCACTGGTGTGAGAGTCAGATACACATCCATGGACTAGACAAACTGGAGCTCTCCCAGTTCACCATCATCGACTACAAATTTGTCACAGAGACTATGAACTTCAAATCTGCCGGACGTTTTCCGCGCCTCAGCCTTCGCTTCCAGTTGAGACGTAACCGAGGCGTCTACATCATCCAGTCCTACATGCCCTCCATCCTATTGGTCGCCATGTCCTGGGTGTCCTTCTGGATAAGCCAAACAGCAGTCCCGGCTCGTGTATCCCTAGGGATCACCACTGTGCTCACCATGACCACTCTGATGGTGAGTGCCCGCTCGTCTCTCCCTCGAGCCTCGGCCATCAAAGCGCTGGACGTGTACTTCTGGATCTGCTACGTGTTTGTGTTCGCAGCGCTCATCGAGTATGCCTTCGCTCACTACAACGCTGACTACAGGCTCAAAGAGAAGGCCAAGAGCAAGGCCAACAAGATGAGCTCAGAGTCGATCGTGAAGAATGGGAAGCAGGCCATGGTGCTCTTTTCCCTGTCTGTGGCCGGAATGAACCAGGGCCTGATGGTCTCCAGCCGCCGTCCACAGCGCTCCGGTGCCGAGACCCCCAGCGAGGAGGACGTGGAGCATAGGAGGGGGCGTGGGGCCAGAgcatcagtagagagagaacaggagaagaaGTGCTGTAGTTGCTGTTCTAAGTGTTGTTGCGCTTGTAAGCCTCTCCAAGCAGACACCATAGATGTCTACGCCAGGGCCGTGTTCCCAGCCACCTTCGCCATCGTCAATGTGATCTACTGGGTGGCATACACAATGTGAGTTGGGAGGACTAAAGACAGGCATCACCGCCAAGGACGGGTGTACCGTACATAGGGGAAAAGGGCCACTTTGAATTCAGTGACTTATATATTGGCACCGATGTAACCAAGGCTTCCTTAAGAAGAACTGTATTCATGTATACAGTAATATGGTGAAGTAAGGACCTAGTAAATAGCAGATAGACAAACGAAATCAGATGAGGTATATGGACATGTTCTGAAGTACAACTAAGTTACGTACAATGGAGCCTTGAGTGGTCGCCGATGTCTTATCCTGAGTGAGGCTCACTGTATGATAACCCAAAAACAGGCTTTTATCTCCAAAACCCTCCACTAGCCACCCTACCCCTACTGCTCTAATCCCTTTCAATACTGATCGCTACCCACGAAGCCACAGCAATGGACTGACGTTCAGCTATGTCCTATTACCGCACATGTATGAACTCTGCTCACACCAGCAACATACACAGCAAGCTAATGTCTCATTGCTGAAAACAAATGCGCACAACAGTTGCTATTTGCTTAACTCACAAACACATCTGTGGATGGACTAACTGTTGAAAAAAAGAAACTGTCCAAACTTCATAATGATGAGATGAGGTGTAGTCTATTATTCTGCATGGTTGATGCCCCCCCTTTCACCATCCCAACTCCCCACTTCTTTTTTTCCCTCTTATAATTCCACCCGTTTTTCCACTCCAGTTTGTTTTGGGCTTCAGAGCATCTTATCTCCTCTTGCCAGGTCTTCCTGTTtcctgattattattattattaaaggaCTTCCTCCACTACC

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007165 signal transduction biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05184 GABRD; gamma-aminobutyric acid receptor subunit delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU929516 lncRNA upstream 136343 53267940 ~ 53268576 (+) True G817278
TU929553 lncRNA upstream 147952 53255311 ~ 53256967 (+) True G817307
TU929449 lncRNA upstream 364424 53039515 ~ 53040495 (+) True G817222
TU929448 lncRNA upstream 366445 53038129 ~ 53038474 (+) True G817221
TU929442 lncRNA upstream 371561 53033139 ~ 53033358 (+) True G817215
TU929796 lncRNA downstream 246943 53672636 ~ 53676213 (+) True LOC110532391
TU931121 lncRNA downstream 266580 53692273 ~ 53692710 (+) True G818719
TU931135 lncRNA downstream 275351 53701044 ~ 53701493 (+) True G818733
TU931139 lncRNA downstream 277691 53703384 ~ 53703594 (+) True G818737
TU931142 lncRNA downstream 278937 53704630 ~ 53704834 (+) True G818740
XM_021616249.2 mRNA upstream 190157 53202981 ~ 53214762 (+) False LOC110532385
XM_021616250.2 mRNA upstream 190157 53202981 ~ 53214762 (+) True LOC110532385
XM_021616246.2 mRNA upstream 250791 53128438 ~ 53154128 (+) False LOC110532383
XM_021616247.2 mRNA upstream 250791 53128447 ~ 53154128 (+) True LOC110532383
XM_021616233.2 mRNA upstream 283055 53089230 ~ 53121864 (+) True LOC110532379
XM_021616263.2 mRNA downstream 170390 53596083 ~ 53673498 (+) False LOC110532391
XR_005053294.1 mRNA downstream 806056 54231749 ~ 54233447 (+) True LOC118966073
XM_021616266.2 mRNA downstream 809103 54234796 ~ 54239506 (+) False LOC110532392
XM_021616264.2 mRNA downstream 809121 54234814 ~ 54239506 (+) False LOC110532392
XM_021616267.2 mRNA downstream 809128 54234821 ~ 54239506 (+) False LOC110532392
TU929242 other upstream 677399 52726421 ~ 52727520 (+) True LOC110532368
TU929026 other upstream 1079279 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 2058425 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 2325977 51078447 ~ 51078942 (+) True G815610
TU927551 other upstream 2604538 50796320 ~ 50800381 (+) True G815428
TU932380 other downstream 1301178 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 1807565 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 2105344 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 2271947 55697640 ~ 55697978 (+) True G820944
TU933965 other downstream 2548349 55974042 ~ 55975316 (+) True G821363

Expression Profile