RNA id: XM_036988349.1


Basic Information

Item Value
RNA id XM_036988349.1
length 3802
RNA type mRNA
GC content 0.49
exon number 24
gene id LOC110532404
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 55192353 ~ 55207365 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagctggcgTGTGGcaggtctcagacgatcccgcaagtGAAGAAGCCATATCGGTATGTCATGGCCTCCAGCATTGCTAAACCAGGCCCTGGGAATGGCTACCCCATGAAGGCACAACTGCAAATTATGGTGCTATCAGCAAAACTGAAAGAGAACAAGAAGAACTGGTTTGGCCCCAGTCCATATGTTGAAGTTGCAGTTGACGGCCAGTCCAAAAAGACCGAAAAATGCAACAACACCCACAGTCCCAAATGGAAGCAGCTGCTCACTGTAATTGTCACTCCTTTCAGCAAGCTCATCTTCCGGGTATGGAGTCACCAGACCTTGAAGTCGGACGTATTGTTAGGCATGGCAACTCTGGAGGTCAGCGACACACTCAAATCCAACGACATGAATATCTCTGAGGTGGTGCAGACCCTGCAGCTGAGTACAGACAAAGACCAGACCGATGTGGTGggggacctgtctgtctgtctggacggcATGCAGGTCGACCCAGAGATGTTTGCCTCTGCTGTCGAGGCCAACAGCCGAAGTATGTCAAATGGGGAATCGCAACACAACGGGGATCATGATGTGAGGAGGAGTAGAGATGGCTCTCCTTCTGTGGATGGTTTGGAGCACAGAGCTTCCCCAACTGGGCGTGTGGTCGCAGTGAACGGCACAGGGTCTCCCGCTCTGTCAGCAGGTGGCTCCAAGGGGAATCCTCTACGGCCCCCCAGGCCCTCCCGACCCCCACCACCCACCCCACGCAGACCAACCTCCTCTCCAGCATCCTCTAATAGTTCCATACCAACTGAAGGAAGCGATGGCCCCAGCTCAGAAACCCCAGTCCGTATGCCTGCACCTGCAGTACCAGCCGCAGACCCCAATGCCCCACCCCCTACACACGACCAGAGCCAAGCAATAGCAGCCAGACAAGCAGCCAGTGTTGCTCCAGGCCCCCCCAGAGTCCCCACTGTCGCTGCAGGCCCACTGCTTCCTGGATGGGAGCAGAGGGTGGATCAGAACGGAAGGCTGTATTTTGTAGATCATGTGGAAAAGAGAACGACGTGGGAGCGGCCTGAGCCTCTACCTTCTGGGTGGGAGCGGCGAGTGGACCCCATGGGCAGGGTCTACTTTGTAGACCACATCACCAGAACTACCACCTGGCAACGGCCCACCATGGAGACGGTACGGAACTATGAACAGTGGCAGCACCAACGCAACCAGCTACAGGGTGCCATGCAGCAGTTCAACCAGCGCTTCATATTTGGGGTGAATGGGCTCCAGGACCAGGTTCCAGCCACTGAGAATAAGCAGTTTGATCCCCTGGGCCCGCTGCCACATGGATGGGAGAAAAGAACTGACAGCAACGAGAGAGTGTACTTTGTCCAACACACCACACGGACTACACAGTGGGAGGACCCTCGCACTCAGGGgCTGCTGAATGAAAAGCCTCTTCCAGAGGGCTGGGAGATGAGGTTCACTGTCGACGGCATCCCGTACTTTGTGGACCACAACAGGAGAGCCACTACATACATCGACCCTCGCACTGGAACATCCTCACTTGAAAATGGGCCCCAGATTACTTACGTTCGAGACTTTAAAGCCAAAGTCCAGTACTTCAGATTCTGGTGCCAGCAATTGTCAATGCCTCAGCACATCAAGATCACTGTCACCCGCAAAACCCTGTTTGAGGACTCGTTCCAACAAATAATGAGCTTCAATGCACAGGACCTCCGCAGGAGACTATGGATCATATTCCCTGGGGAAGAAGGCCTCGACTATGGTGGGGTGGCAAGGGAGTGGTTTTTCCTGCTGTCTCACGAGGTGCTGAACCCCATGTACTGCCTATTTGAATATGCTGGGAAGGACAACTACTGCCTGCAGATCAACCCTGCCTCATACATCAACCCTGACCACCTTAAATACTTTAAATTCATTGGACGCTTCATCGCTATGGCTCTTTTCCATGGGAAGTTCATTGACACAGGCTTCTCGCTGCCGTTCTACAAGCGCATGCTGAACAAGCCATGGGCACTGAAAGATCTTGAGTCCATTGACACAGAATTCTACAATTCTCTTATCTGGATTAAGGAGAATGACATTGAGGAGTGTGGCCTGGAGATGTACTTCTCTGTGGACAAAGAGATTCTGGGTGAAATCACCACTCATGAGCTCAAGCCGGACGGTGGCGAGGTCCTGGTCACTGAGGAGAACAAGGGGGAGTATATTAGGCTTGTAGCAGAGTGGAGGTTGTCCAGAGGTGTGGAGGAGCAGACCCAGGCCTTCTTTGAGGGTTTCAACGAGGTCCTCCCACAGCAGTACCTGCAGTACTTTGACGCCAAAGAACTGGAGGTGATGCTGTGTGGGATGCAGGAGATTGACCTGACAGACTGGCAGAGGAACACCATCTACAGACACTACGCACGCAGCAGCAAGCAGGTCCTCTGGTTCTGGCAGCTCATCAAAGAGATGGACAACGAGAAGCGGATGAGACTCCTCCAGTTCGTCACAGGCACCTGTCGCCTTCCCGTTGGAGGCTTTTCTGACCTATTGGGGAGCAATGGCCCGCAGAAGTTCTGCATTGAGAAGGTGGGAAAGGAGAACTGGCTGCCCAGAAGTCACACCTGCTTCAATCGATTGGATCTGCCTCCTTACAAAAGCTATGAGCAGCTGAAGGAGAAATTGATGTTTGCGATTGAAGAGACTGAGGGCTTTGGGCAGGAGTGATCTAGCAACTGATCGATAGACACAGGAGTGTGGTCTTCGTTTGTCAGTGTTTAAGCCAGGGAGCATCTCGAAGACTGGCATCTGTGTAagcgtgtttgtgcgtgcgtgctgTTGAAGGGAGAGACCTTGCTCTAAAATATTGGAAGCATATTAGAGGTGGTTATTGATCCACAAGAGTAAACTGCTCCTGTCTCATAGAATGTGTGCCCCTCCCCCCATCATGTATTAACGCTGGAAACTCACCCTCAATAACATCATATCATATATGGGACAGGGTTATCAGCAGCATCGGTCCCAACACTATTTCTGACTATCCCAACACTGACTTTAAGGAAAATTGTTACGTCTGATAAGACAATGGCCAGATCAAGAAGGTTCACTGCACATGCTTTAAAATAGAACAGTTCTTCTGTTCAAGGTTCCTTAGCATTTATCTGTGAATCAATAAAATATTGCACGGGACAATATTGGCCCCTATATTTATAAAGGTACATGGATGTGGCTCTACTATGACCCTAGTTTTATAGGGCATTGTGACATGATAAAATGTAATCTCTTTAAGTATTCTGGGGAATAGGAAGTGTGAAATGTTTGTGTCCAGAATATTGCcttgatgtcttggctgatttgcgATTTAACCAAGTTGTGTGCTGAGGTTGTGCCTGTGAAGACTAAACAGGTAGCTTTTAAAAGAGATTTTTAACAAACTGATTTATCCATTTTATATTAATGGGAGATGTTTTTCTAGCCGTGGCAAAGGCATGGGAACGTCGGTGAGAATACATTTAGTTTGTTTTTCTGGgttgattttgaatggaaatcctAGGGTAGTTAATGTGTAAATAATGATTTATGGTGCATTGAAAATAAAAAGTTGGCTCCTATTTTTGTCTCCAGATGTATCCTTAATGCAACTTAAACTGCTCTCCCTGTATATGAAACCATGTTGTAAATTGTGTTAATAACAAATTAATTTCATTTTGTAAAATAAAGTGTTTAGTAATAAGGGGTGTGTTGTGAAACGCCATTTGAAAGATTTTTCCCCTGTTTTGATTTATGTACATTATgaatttgtgtaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K05633 WWP1, AIP5; NEDD4-like E3 ubiquitin-protein ligase WWP1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU932713 lncRNA upstream 8730 55184604 ~ 55184824 (+) True G820211
TU932675 lncRNA upstream 35286 55157091 ~ 55158268 (+) True G820175
TU932673 lncRNA upstream 36827 55155407 ~ 55156727 (+) True G820174
TU932676 lncRNA upstream 44274 55127150 ~ 55149280 (+) True G820176
TU932662 lncRNA upstream 83355 55108836 ~ 55110199 (+) True G820163
TU933193 lncRNA downstream 14214 55221579 ~ 55221882 (+) True G820655
TU933191 lncRNA downstream 16671 55224036 ~ 55224311 (+) True LOC110532406
TU933216 lncRNA downstream 52996 55260361 ~ 55260802 (+) True G820673
TU933261 lncRNA downstream 91411 55298776 ~ 55299160 (+) True G820717
TU933278 lncRNA downstream 100349 55307714 ~ 55307954 (+) True G820734
XM_036988340.1 mRNA upstream 258984 54926728 ~ 54934570 (+) True twist3
XM_021616270.2 mRNA upstream 887381 54295022 ~ 54306173 (+) True LOC110532395
XM_021616271.2 mRNA upstream 945639 54245323 ~ 54247915 (+) False LOC110532396
XM_021616267.2 mRNA upstream 954048 54234821 ~ 54239506 (+) False LOC110532392
XM_036988353.1 mRNA downstream 10241 55217606 ~ 55224372 (+) False LOC110532406
XM_036988352.1 mRNA downstream 10256 55217621 ~ 55224372 (+) False LOC110532406
XM_036988354.1 mRNA downstream 10256 55217621 ~ 55224372 (+) False LOC110532406
XM_021616290.2 mRNA downstream 120747 55328112 ~ 55372587 (+) True LOC110532408
XM_021616291.2 mRNA downstream 167810 55375175 ~ 55410299 (+) True LOC110532409
TU932380 other upstream 466178 54726871 ~ 54727376 (+) True G819897
TU929242 other upstream 2466034 52726421 ~ 52727520 (+) True LOC110532368
TU929026 other upstream 2867914 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 3847060 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 4114612 51078447 ~ 51078942 (+) True G815610
TU933208 other downstream 25893 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 323672 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 490275 55697640 ~ 55697978 (+) True G820944
TU933965 other downstream 766677 55974042 ~ 55975316 (+) True G821363
TU934014 other downstream 854341 56061706 ~ 56063655 (+) True G821409

Expression Profile