RNA id: XM_036988355.1


Basic Information

Item Value
RNA id XM_036988355.1
length 2975
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110532410
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 55419323 ~ 55425566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAGATATTGCAACGGTTTTCAGATCAAAGTTCACTTCGCCCAGGTAGCTAAGCGAGTAGCCTGAGATACTCTTTGGCTACGCTAACTTACTAACAGTAAGCTAGCTAGCGCAACATTTTTGCTGATGATACTGTACTTgtcttaaaaaaaatgtaaatgtcacatttatttaaccaggtaggccagttgagaacaagttctcatttacaactgcgacctggtcaagataaagcaaagcagtacgacaaaaacaacaacagatttacacataaacaaacgtacagtcaataacataataGCATAGTCTTGACCGACGTCGGTTGATCTAGCTAGCAACTTTGCATGTCATTTTAAGTCGTTTGAATAATGTTTCTAGTCATGATCTAATTTCACAAGATTCACAAAGGGTTTTGAACAGACTTTGAACCCTGTGTGTCGGGTGAAAGGTCAAGCGGCCATCTTTGAAGCGACCCAGAGAGCTGTGGTGGTTTCTAGAATGCTAGTTAACTAGCTACTATACTAGTACTGTAGCTAACGAAGAAACGTTACAGCTACATGTATTCAAACGGCACATTACTAAATTATAAATAGATGTATTGTTAACCTCAAAGTTGTGGGGTGTGTAACGGTACATCAAAGAGTACTTTCTGGGCACATCATGTCTTCTTTTTCTGAGTCTGCGTTGGAGAAGAAGCTTTCTGAGCTCAGCAACTCTCAGCAAAGCGTACAGACGCTGTCTCTGTGGATCATTCATCACCGCAAACACTCGCCGCTCATCGTCAAAGTATGGCACAGAGAACTGAAGAAAGCAAAAAGCAGCAGGAAGTTGACTTTCCTGTATCTTGCCAATGACGTGATTCAAAACAGCAAGAAGAAAGGTCCAGAGTTCGCCAAAGACTTTGAGACAGTCCTTGTTGACGCTTGCTCTCATGTTGCAAGagAGGCAGATGATGGCTGTAGAAGGCCCATCGACAGGCTGCTCACTATCTGGCAGGAGCGCAGCCTCTACAAGGCAGAGTTCATCCAGCAGCTGAAGCTCGCTATCGAAGACTCAAACAGCCCCCAACACCAACCCACAGAGGAGAAGAAGGCCCCTAAACGGACCTATCAGAAGATGATCCAAGAGccggaggaagaggaagaagatgaCTACAGGGGCAACATGTCCCCACAGAATTCAGACTTCTCAGGGCCACAGCTGaCGGAGGAGCTGGTCAAAGCCCTGCAGGACCTGGAGAATGCAGCCTCGGGTGATGCTGCGGTGCGCCAGAAGATTGCCTCTCTGCCACAGGAGGTGCAGGATGTGTCCCTGCTGGAGAAGATCACAGATAAAGAGGCAGCTGATAAACTCTCCAAGACAGTGGATGAGGCCTGTCTACTGCTGGCTGAGTATAACGGACGTCTGGCTGCTGAGCTGGAGGACAGGAGGCAGCTGGCGCGCATGCTGACCGAGTACATCGGTAGCCAGAAGGAAGCcctcacagagagggagaagaaactAGAAGAGTACAAACAGAAGCTGGCACGAGTCACGCAGGTGCGCAAGGAGCTCAAGTCTCACATCCagagcctgcctgacctctctCTGCTGCCCAATGTGACGGGAGGCCTGGCCCCTCTACCCTCTGCTGGAGACCTGTTCTCCACCGACTGAGCTTCCTGCTCCCTGTCACACCCTGCCTCTCGCCAGGGCACACACTCCCTGTCGAACCCGCTCACTAGCTACTGAACCCtagggagagactgagagggacaTTGGAAGCTTGGGGACATCCCTGGTGGGAGAGACAATGGTTGTTGAAGATTCCGTTCCACCAGCTTGGACAAATCTCCTTTACATTTTTATTCTGAACGCCAGTCAAACGCTAGCTAACTGATTCTGTGTTGAAGAGAAATGTTGGGTCATTAGCCAATCTCCATTTTTGTGTTCATATGGTGAGATGGTGGCTCGCACACACACTAgatcacgtgtcaaactcattccacggagggtcaactgtctgtgggttttcactcctcccttgtacttgattgatgaaataaggtcactaattagtaaagaaaTCCCCTCACCTTGTTTCTGTGTCTTAGGGAAAAGCAAAaaccctccatggaatgagtttgacacccctgcactAGATCGTCGGGACAGCTTTGTGAAGAGACACGTCACATTTATTTTAACGGCTTTAAGTTGGTTGCTTTTTAATGTTGATGAAATTTCAGGTGATTTTTTGTTAGGGTGTATGTAGGGAGGGGGCCTGTTTTTCCATGTAGGTTGTCATTATTTACCATTCTCTGTAATTCCAGTTCAACACACAACAATATCCTTACCTTTCAGGTTTGTCATACATAGCACTGAGTGGCCAATCATCGGTCAATAACATTTCATCCATGTAGTGGTGTTTCTCAATCCATTGTGAAATAGTTTAGCCCTCAGACAAGTGACTGATTGAAGTTATTTGAGCAAACTTGGGGCAGATTGAGATGCTCACTGTCTTTGCTGAGCTCTGCTGATGTCATCCTTTGTCACAGATGATTGTATCACTTGGTACAAATGTCAAACTAAGAGGCTTTTCAGGACTTGGCCCGGCCACTACTTATTCAGCATTATTCAGACTTTTTTGAAGAGTAGCAGAAAGTTAACATGGTTTGTTCTGTCACTAGTTTGGATTATGGGCACAGACCTGAGAGATAAGTGTTTCCCCATGTTGAAGAATAGTAATACGACATCTGCCCATGGAAATGTTGCTTTACTACAGATGGTAGACCTGTGTGGCATGTATTTCTCTCTGCCGATGCTTTACTACAGATGGTAGACCTGTGTGGCATGTATTTCTCTCTGCCGATGCTTTACTACAGATGGTAGACCTGTGTGGCATGTATTTCTCTCTGCCGATACTTTACTACAGCAGTCATTTCACTTATAAAataattccatggatagaaaTAAAATGGAACCATTTGGAAAGA

Function

GO: NA

KEGG:

id description
K15559 RTT103; regulator of Ty1 transposition protein 103

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU933315 lncRNA upstream 92897 55326214 ~ 55326426 (+) True G820771
TU933313 lncRNA upstream 94271 55324832 ~ 55325052 (+) True G820769
TU933304 lncRNA upstream 97847 55320448 ~ 55321476 (+) True G820760
TU933286 lncRNA upstream 105905 55313040 ~ 55313418 (+) True G820742
TU933278 lncRNA upstream 111369 55307714 ~ 55307954 (+) True G820734
TU933380 lncRNA downstream 31013 55456579 ~ 55456870 (+) True G820831
TU933386 lncRNA downstream 40397 55465963 ~ 55466765 (+) True G820837
TU933387 lncRNA downstream 42133 55467699 ~ 55467901 (+) True G820838
TU933393 lncRNA downstream 47176 55472742 ~ 55482782 (+) True LOC110533022
TU933423 lncRNA downstream 190303 55615869 ~ 55616148 (+) True dlgap4a
XM_021616291.2 mRNA upstream 9024 55375175 ~ 55410299 (+) True LOC110532409
XM_021616290.2 mRNA upstream 46736 55328112 ~ 55372587 (+) True LOC110532408
XM_036988353.1 mRNA upstream 194951 55217606 ~ 55224372 (+) False LOC110532406
XM_036988352.1 mRNA upstream 194951 55217621 ~ 55224372 (+) False LOC110532406
XM_036988354.1 mRNA upstream 194951 55217621 ~ 55224372 (+) False LOC110532406
XR_002474920.2 mRNA downstream 47174 55472740 ~ 55482776 (+) False LOC110533022
XM_021616299.2 mRNA downstream 105467 55531033 ~ 55647541 (+) False dlgap4a
XM_036988357.1 mRNA downstream 223203 55648769 ~ 55673611 (+) False LOC110532413
XM_036988358.1 mRNA downstream 223203 55648769 ~ 55673611 (+) False LOC110532413
XM_036988360.1 mRNA downstream 223203 55648769 ~ 55673611 (+) False LOC110532413
TU933208 other upstream 185525 55233258 ~ 55233798 (+) True G820665
TU932380 other upstream 691947 54726871 ~ 54727376 (+) True G819897
TU929242 other upstream 2691803 52726421 ~ 52727520 (+) True LOC110532368
TU929026 other upstream 3093683 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 4072829 51345372 ~ 51346494 (+) True G815767
TU933425 other downstream 105471 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 272074 55697640 ~ 55697978 (+) True G820944
TU933965 other downstream 548476 55974042 ~ 55975316 (+) True G821363
TU934014 other downstream 636140 56061706 ~ 56063655 (+) True G821409
TU934051 other downstream 693553 56119119 ~ 56124185 (+) True LOC110532426

Expression Profile