RNA id: XM_021616300.2


Basic Information

Item Value
RNA id XM_021616300.2
length 4916
RNA type mRNA
GC content 0.43
exon number 16
gene id LOC110532413
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 55648769 ~ 55683707 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGCATATTGATTCGTTTCCTGCGGACGCCGGGAGGAGCCAAACATTAAGAGGATGAGGAACACCTCGGAGCGAACTGATTAAATACTGTACTGAATCAAAAGTGACTCACCAAAGAGATAGCTACATTTGTGTGGACTCGTCTATCGTCATTTTGAGAGATGATGATGACCTCACTCAGCTAGTGACCTGACCTCCCAGTCCCAGATCATCCTCAGCCAGGCAACCCAGCCGTGACAGAACCAGTCATTGGACAGCACAATAGTATaatatatatgccatttagcagacgcttttatccaaagccacTCAtccgtgcatacattttacgtatgggtggtcccaCAGTGACAGTGTTCAATTTCTACTAGCATCATGGCTGCCAGCCAGCAGAAAGGCACTGCAGTGCTGGAAACTTCAACAGAGGGAAAGCGAACAGAGCTCAGGGCCAATGAAGTACTGAAGAAATGCTCATGGGCCTCTTATATGACCAACTCCCCCACTGTGATTGTCATGATTGGTCTTCCTGCCAGAGGGAAAACCTACATGTCCAAGAAGCTAACCCGCTACCTCAACTGGATAGGAGTGCCAACCAAGGTGTTCAACCTGGGGGTCTACAGGCGAGAGGCTGTAAAAGCCTACAAATCCTATGACTTCTTCAGACATGACAACGAGGAGGCCATGGAAATCAGGAAGCGGTGTGCTCTGGTAGCTCTGCGGGATGTCAAAGCTTATCTGACTGAGGGGGGCCAGATCGCTGTCTTTGATGCCACAAACACCACccgagagaggagagaattacTCCTTAGTTTTGCAAAGGAACATGCTTACAAAGTGTTTTTTGTGGAGTCATTGTGCGACGACCCTGATGTCATTGCTGCTAATGTTATGgaTGTGAAGGTATCCAGTCCAGACTacccagagagacacagagagagtgtgatgGAGGACTTCCTGAAGAGAATAGAATGTTATAAAGTCACGTACCAACCATTAGACCCAGATGAAAATGACAGgGACCTGTCCTTCATCCAGGTCATCAATGTGGGCCGGAGCTTCCTGGTCAACAGGGTGCAGGACTACATCCAGAGCAAGATCGTGTACTACCTCATGAACATCCACGTGCACTCTCACTCTATCTACCTGTGTCGGCACGGAGAGAGCGACCACAACGTGGAGGGACGCATCGGGGGCGACGCAATGCTGTCTGTTCAAGGGAAAAAGTTTGCTGGAGCGCTTAAGGGTTTTGTGGAGGAGCATGGTCTGTCGGACCTAAAGGTGTGGACCAGCCAGCTGAGACGGACCATCCAGACTGCTGAGGAGCTTGGGGTGCCCTACGAGCAGTGGAAGATACTCAACGAGATCGATGCAggtgtgtgtgaggagaTGACCTATGATATAATCGAGAAAACCTACCCTGAGGAGTTTTCCTTGAGAGACCAGGACAAGTACCACTACCGCTACCCAGGGGGAGAGTCCTACCAGGACCTAGTGCAGAGGTTAGAGCCGGTCATCATGGAACTGGAGAGACAAGGCAACGTGCTGGTCATCTGCCACCAGGCTGTCATGCGATGCCTGCTCGCTTACTTCCTGGATAAGAGTGCAGATGACCTGCCCTACTTGAAGTGTCCCCTCCACACGGTTCTAAAGCTCACCCCTGTGGCTTATGGTTGCAAAGTGGACATGTTTGACCTGAAAGTGAAGGCTGTGAACACTCACCGGGATAGGCCATTAGATAAAGTCCGTAATGACGTCGTTCCTGCCACATTCCTACGGAGGAACAGTTTCACCCCGCTGTCCAGTCACGACCAGGTGAAGCGACCGCGCCTCTACAGCGCTGGCAACCTACCTCAATCTCGACGGCCCCTGGCCCCCTTTCTACCCAGCATGCAGTCCTTTGAGGACCCTGAGGGAGCAGAGTTGGCACAAAGCCAAGAGTCTCTCAACTGCTTCAGCCCAGAAGATGCTGTCCACAGTTGAAGAGGACTGAGAAGGGTGTCTCCACTCCCCCACATTTTCGCTGCCatcagatctgggttcaaatacaattTAGAAATCTTGTTAAATACCTTTAGTGTTCGCTTTAGcttgcctggagtgccaggtgggcAGTGTTTGCTTTAGcttgcctggagtgccaggtgggTAGTGTTTGCACTTTGGGGACTTTTCCGCTGATTCCATTGCAACAGTGAAGCGCTATAAAGCACAgctaaattattttttattatttcaaatactatttgaacccaggtaccCTCTGTCTGCTCAGGCTTGCTTCATACCATGCCAGCCTTACCAATTTGATTGTCAAGCAGGAGTTCAAGCACACTGTCTTAGCAGCAAATTAGGTATGGAATGTGGTTGTTGTAGTGGCCAGAATTTGTTCTACAGTTCCATTTCTGTTGCCATCTGTTAGatagatggtgtgtgtgggtgaaGAGCGATGTGATTTGAGACAAACATGACCTTGCgcacacacacttatcaacagTCAACGTTTAATTTATTGTGAACAGAACTTTAGAATGTTGAATAGAGGACATCCTTGAGATTATTTGTCTCAGTAGATTTGAGACATTCAGTGATTTGTCTATTACAATGTATTTAATTTACACTAACTAATGGAGAGGGTTGCCACActgaaaaatgtatcaaaaacAAAGCACTGACTACAAACACTGTCTTATCCTTAAATTATTATCCtttaattctacaatgtagtttATAAACAATTACTTAAGATCTTATGAATAatatattctgaacaaaaatataaatgcaacatgcaacaattttaatgGTTTAACTGAGTTAcagctcatataaggaaattagtacatttaaattaggccctaatctatggatttgacatgactgggCAAGGTTGCAGCCATTGGGGCCTGGGAAGGGCataagcccacccacttgggagccaggcccagccaatcagaatgagcttttcctcacaaaagggctttattacagacataaatagtcctcagaaattaacataaaattctctggcaacagttctggtgggcattcctgcaatcagcatgccaattgcacgctccctcaatttgagacatatgtggcattgtgttgtgacacaactgcacactTTAGTGATAttttgttgtccccagcacaaggtgcactgtgtaatgagcatgctgtttaatcagcttcttgacatgccacacccatcaggtggatggattgtcttggcaaatgagaaatgctcactaacagagatgtgcatacatttgtttacatcatttgagaaatgtatttttgtgcgtatggaacatttctgggatcttttatttcagctcatgaaacataggaccaagaCTTTTACATGTtgtctttttatatttttgttcagtatatgtaccCCTTTAATTGGATAGTTGAATATCATCTCTTTTGAACATTCTCATACTTGACCAGCCTTGTTTCCTCAGTGAGAGTACAAATGCTGAAAGACCACCATACAGGATTTAACATTTTGGCTTAAGAGTTAATGTTATTAGTTAGTCACATGTTACTTTTACATGTtacattactgtgtgtgtatagagtTCACATTTCACACTGCAATTCTGTCACATATTCATGGCCATGTTATGAAACACCCATGTCTTTGCATTATCAATGTATCAATTGCATGTCCTCAGCTAAAATGGCAACATGATTTAAGGGGGCAAATATTTTTTAGACAGTACTACTGTAGTTACAGTCAACATGCCATGCCATCAacattttggaatatttattCTTAAATGTGCTATACTGACATTTGAAAAAGCACAGCGCAATCGAAGATGGGTACTTTCATACTTACAGTTCACTGATTGTGTCCAACCATGTGCATCTTGTTTATTACTGCCACATTGATAATGTTAAATTCAATGCTGCTCTAAAGTGCTTCTGTGCTGGTGTTTAGCAACATTACTTTTGTGGCTGTTACAAGACAATGTTATTATATAAGTAGGCAGTCAGTCAGTAGCCTGTAAGACTACAACATACTGAATGATATAATGGTATGATGCTGTAAGATATTTTTAGATCACTAGAATTATCTGATGTAAGTGTAAATTATTGAAGAAATTATGTTGTACTCTGTCAGAACGTCTTGCTCATGGCAGTTTGACTTGACTTGGTTCTCTGGTACATAATGTGGCCAGATGTATTGAGCTCATTGGGAGGTGTCATCCTGTTTAGATGTTTCCACTacaactccctgtctctctcaagcCAGGGCAAGCCTGTGGCAGAACCCTGGCTATGGGGCAAGACTGGGAGTGGCTTCCTGGGAATAATAACCTAGATGACTCAATCTTCTCATATTTGACCTACAGTATCTGTGAAAGAGGACTAATACAATAAGTGTCTCAAGGACATAAAGGGAAGGTGGCAGCAGGGGATTGGGGATGTTCAAATGTTTCCAGACTGGTGTGTCATAGGGAAATGGGTTGGTTCATTGTTATACTACCATCTGaaacttgtctgtgtatagcaTGAACTACTGAAGCATACAGTACATTATTCTCACAGGAAGTATTTATTTGCTTCAATCAGCAGGGGTGCCTCCTTTTgacaatattattttttttttcatttctgtTATTGGACGCAGTAATGTCCTTGTCACGCATTACCGCTTTCACAGCCTTGTTTGTGTATCAGTGGGCATCTTTCGCAAGACTGCATTGTACTACACTCGAGGCAACAATTTACCTAAACCAACAACACTttaaggtgtggagacattgtaATGAAACCTTATGAGTCATATATTAACTTGTTTTACTGTATTTATAAATTAGGACAAATCTGAACTATAGTTGGAATAGAAATAATAAATTGTTGGGTTTTCTGATGTGTAGGGAACTTAAATGGTGCTTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU933488 lncRNA upstream 31162 55617327 ~ 55617607 (+) True G820937
TU933423 lncRNA upstream 32621 55615869 ~ 55616148 (+) True dlgap4a
TU933393 lncRNA upstream 165987 55472742 ~ 55482782 (+) True LOC110533022
TU933387 lncRNA upstream 180868 55467699 ~ 55467901 (+) True G820838
TU933386 lncRNA upstream 182004 55465963 ~ 55466765 (+) True G820837
TU933865 lncRNA downstream 153716 55837423 ~ 55844030 (+) True G821275
TU933835 lncRNA downstream 165915 55849622 ~ 55853214 (+) True G821250
TU933954 lncRNA downstream 273661 55957368 ~ 55957642 (+) True G821355
TU933955 lncRNA downstream 280255 55963962 ~ 55964172 (+) True G821356
TU933956 lncRNA downstream 280549 55964256 ~ 55966429 (+) True G821357
XM_021616299.2 mRNA upstream 1228 55531033 ~ 55647541 (+) False dlgap4a
XR_002474920.2 mRNA upstream 165993 55472740 ~ 55482776 (+) False LOC110533022
XM_036988355.1 mRNA upstream 223203 55419323 ~ 55425566 (+) True LOC110532410
XM_021616291.2 mRNA upstream 238470 55375175 ~ 55410299 (+) True LOC110532409
XM_021616290.2 mRNA upstream 276182 55328112 ~ 55372587 (+) True LOC110532408
XM_021616304.2 mRNA downstream 1547 55685254 ~ 55691748 (+) True LOC110532415
XM_036988363.1 mRNA downstream 19878 55703585 ~ 55827053 (+) False LOC110532416
XM_036988365.1 mRNA downstream 19878 55703585 ~ 55827053 (+) False LOC110532416
XM_036988361.1 mRNA downstream 19879 55703586 ~ 55827053 (+) False LOC110532416
XM_036988364.1 mRNA downstream 19879 55703586 ~ 55827053 (+) False LOC110532416
TU933425 other upstream 33368 55531037 ~ 55615401 (+) False dlgap4a
TU933208 other upstream 414971 55233258 ~ 55233798 (+) True G820665
TU932380 other upstream 921393 54726871 ~ 54727376 (+) True G819897
TU929242 other upstream 2921249 52726421 ~ 52727520 (+) True LOC110532368
TU929026 other upstream 3323129 52323271 ~ 52325640 (+) True LOC110532349
TU933495 other downstream 13933 55697640 ~ 55697978 (+) True G820944
TU933965 other downstream 290335 55974042 ~ 55975316 (+) True G821363
TU934014 other downstream 377999 56061706 ~ 56063655 (+) True G821409
TU934051 other downstream 435412 56119119 ~ 56124185 (+) True LOC110532426
TU934050 other downstream 442754 56126461 ~ 56132936 (+) True LOC110532427

Expression Profile