RNA id: XM_021616317.2


Basic Information

Item Value
RNA id XM_021616317.2
length 2568
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110532424
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56042832 ~ 56051988 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATATGACTTGAAGTCACATTGAAGCAAGTATTCCTATGCGCACGCTTGCTTGGGCACACACCCTCCTCTGGCATGAATTTGTCAGTATTGTGAGAACTTTATTACAGATAAGGCTGGCCGGCAATGACCAATAACCTCGCCTTACACTCAACCAATCAAGCCAGCTAAGGACTCCCTCACAACTGTCAGAGCATCAGACAGAGCTTCGACCACCTGAAAGTGTTTGAGACACGGCTCCAGGCATCCTAATGACCCTCTCTTTGACACATCACTGCCTCATGACCTGAGGGCCACCATCATCTGTTACAACCTGACGACTGCAACAGCCAACCAGAGAGGACCACTGAGGTAAAGCCTACATAGACTCATCCACCACCAGAGGAGCTTGGGACTTGAGCTTCTGACTAACCGGTATCTGTATTGTGACTCACTGTGGAACTCTTCAGCACTTTGACAAGAAGACAGTCCTTTGACTGACTCAAAGACAGATATCCAGAGTGACAGTCTATCAGCTCAGACAGCATCAGCAGCCTACACCTCTGACCAGCACTGTTGAAGCTATGGGGAGTCCAGGCTGTGACCGCGAGGGGAGCACAGTGCCCCTTCCCCTGATGAGTTTCAGTGACTACTCCCACAGTGGGTCTGCCCTAAGGGcctgggagaaggaggaggacacCAAGCCGCCCCGGGGACTGATAAGTGTGCCTAAACACACCGCTCCTGAACGCAGTCTGCAAGGGGTCTTCCTGCCCTGCTTCGACATGCTCCTCACTGAAAACAGCTCGTGGCTGTTGAAGAAGTCTGACGTAGCGCCCCCTGTGCTCCCCTGTAAGGCCCTGGAGCAGTGCCCTGTCATCAACAGCCAGGGCCTGGGGCTCCCCTCTGGGCTAGAGGGACAGGTTGAGGAACGCTGTCTGGAGCAGGTTCAGAGCATGGTGTTGGGAGAGGTACTGAAGGACATAGAGACTGCCTGCATACTGCTCAACATTACTCCAGACCCCATGGAGTGGAATTGTGGGAACGTCCAGAAGTGGCTGCTGTGGACAGAGCACCTGTACAGACTACCCCAGGTGGGCAAGGTGTTCCAGGAGCTCAGTGGAAAGGATCTGTGCTCCATGACAGAGGAGGACTTTAGGCAGCGCTCAATGCAGTGTGGAGACCTGCTATACGCTCATCTGGACATCTGGAGATCAGCTGCATGCATGAAGGAGCCCTGCACACCAGGCGATAACAGGCTACATGGTGCTGAGGAGTCGTGGCCAAAGGCAGACTCCTCCTGCTCAGGCCAGCCCATCCACCTGTGGCAGTTTCTTAGAGAGCTGCTCCTCAAGCCGCACAACTACGGACACTGCATCCGCTGGCTCAACAAGGAGAAAGGAATCTTCAAAATAGAAGACTCGGCTTATGTGTCCAGGTTATGGGGCATCAGGAAGAACCGTCCAGCTATGAACTATGACAAGCTGAGTCGCTCTATCCGACAGTACTACAAGAAGGGCATCATCCGTAAGCCTGATGTGTCCCAGAGACTGGTCTACCAGTTTGTCCACCCTGTATGAAGCTGTGGGGCAGCCAGCCAGAAGAGAAGATTAGTGTTGATGATGACTGGAGACCACTATCTAGCCAAACAGGTTTTGGCAAAAGGATTGTTTTAGCTCCAGCAACGCAGTGTATAGACTGCTTCCTGCATTGTGCATTCCTGCCTAATTCATATATTATTAGGTCAACTGATTGGATATGGggttttgttattttttattgccACATTGCATTAGATATGCAAAGTTTTACATTTCAAATATTTTCAATACTAATTGTCCAATATTTCATTTTCACAAAGGTCAAAGTCTGTATTCTTTTTCTCTGATTGTGACTTCACATTACTGTAACCACCAGTAGTTACTTTTTAAGGTGGTTCCTCTTTCATTACCATTACACAATGTCCCTCGGATATAAAAGCATTCGTACAGTTCATGGCATTTTGTTACATGCCGGGTGAATATTGGAGTGAATGTGTGCAATGTGTTTACTACTGATCTGTAGTGGTATTCCCATGTGTGGGGCTATTCATGAGTCACAAGTAACCACAGCTGTTTAATCACACAGATCTGATGTTTACGTTGGTAATTTCATTTAAGTATAGAGAAATTATTTGACTCCGGGGCCCGTTCACTGGCGGAAGAATCAAGTCTAATAGGAATTTGTGAATACAGTAAACTACTGTAATAGAAGCATTTCAATATCATTGCCACATTTCAAGTGCTAGAATCCATATGTAGAGACAAACACCAGTGATagaagccctgtttatacctggttctaacatgctgcctttgtcctgatcttatccacattctgattgtgcccacatttttagacaAGTGAAGACGATTAAAAGAAACATTATGATCAAATCTTATAAGTGTAAACAGGCAAGATCAAGTCAAGATCATGACGAGGGACGCGTGTTAACggcaggtataaacagggctagaGATTAGTGACTGAATCCATACTGTACACATGTTAGAACATAATATTGAATATTTATAATGAGTGTGAGCAAGATG

Function

GO: NA

KEGG:

id description
K09442 SPDEF; SAM pointed domain-containing ETS transcription factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU933983 lncRNA upstream 15055 55998969 ~ 56027777 (+) True G821380
TU933997 lncRNA upstream 23261 56018624 ~ 56019571 (+) True G821393
TU933979 lncRNA upstream 46094 55996516 ~ 55996738 (+) True G821377
TU933973 lncRNA upstream 57511 55985117 ~ 55985321 (+) True G821371
TU933971 lncRNA upstream 61634 55980912 ~ 55981198 (+) True G821369
TU934012 lncRNA downstream 215 56052203 ~ 56055971 (+) False G821408
TU934013 lncRNA downstream 215 56052203 ~ 56055971 (+) True G821408
TU934040 lncRNA downstream 35615 56087603 ~ 56088983 (+) True G821433
TU934058 lncRNA downstream 51504 56103492 ~ 56112008 (+) True LOC110532428
TU934070 lncRNA downstream 92828 56144816 ~ 56145130 (+) True G821459
XM_036988387.1 mRNA upstream 7679 56028537 ~ 56035153 (+) True LOC110532421
XM_021616308.2 mRNA upstream 82962 55957961 ~ 55959870 (+) False taf11
XM_021616309.2 mRNA upstream 82962 55957964 ~ 55959870 (+) True taf11
LOC110531209 mRNA upstream 213248 55827431 ~ 55829584 (+) True LOC110531209
XM_036988366.1 mRNA upstream 215779 55703586 ~ 55827053 (+) False LOC110532416
LOC110532428 mRNA downstream 51577 56103565 ~ 56112044 (+) False LOC110532428
XM_021616321.2 mRNA downstream 67017 56119005 ~ 56124213 (+) False LOC110532426
XM_021616322.2 mRNA downstream 73766 56125754 ~ 56130413 (+) False LOC110532427
XM_036988394.1 mRNA downstream 194722 56246710 ~ 56463547 (+) True LOC110531212
XM_036988396.1 mRNA downstream 538703 56590691 ~ 56641983 (+) False LOC110532433
TU933965 other upstream 67516 55974042 ~ 55975316 (+) True G821363
TU933495 other upstream 344854 55697640 ~ 55697978 (+) True G820944
TU933425 other upstream 427431 55531037 ~ 55615401 (+) False dlgap4a
TU933208 other upstream 809034 55233258 ~ 55233798 (+) True G820665
TU932380 other upstream 1315456 54726871 ~ 54727376 (+) True G819897
TU934014 other downstream 9718 56061706 ~ 56063655 (+) True G821409
TU934051 other downstream 67131 56119119 ~ 56124185 (+) True LOC110532426
TU934050 other downstream 74473 56126461 ~ 56132936 (+) True LOC110532427
TU934932 other downstream 520619 56572607 ~ 56572957 (+) True G822283
TU935064 other downstream 710637 56762625 ~ 56763540 (+) True G822404

Expression Profile