RNA id: LOC110532428



Basic Information


Item Value
RNA id LOC110532428
length 1146
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110532428
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56103492 ~ 56112044 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATCATGAGACATGGCGTTGTCATAACTGAAAGTGGTGTCTAAATTGTGCTTCTTGAAACAGtctaacatttatttttaaatgttatttttttggcCCTTATTATGACTGTTTCTACGAATACCTAAGCGTTAGCGGCACTACTTATAACTATGCATGGCGGCTGCTAGTTAGTTGGCTTGCCCTGCTGTATTCGTTCCACTGATACAATAATACAATGTAGCATAGTCTTGGCTTTATAACTAGCTCATTGTAACTTTATCGCCTATATCCCGGTGTATGCCTTAAACATTGTGTCCGATGTTTTTAAAAAAGTGTAGTGCTACACTGCCCCCAGAGGGACCCAGGCATTATGTAGTTAGCTAACTGTTAGTTGGGTAACGTTAGCAAAGCGAGTAGTTAACTAGCTAGTTGTAACTACCAGTTAGCTAACTAGGCATACTTGCCATGATTTAGAGACACTGACAAGTGTTCAACCTTTATACCATATTTGGTTAATCTCTTCTATGTGGTCCATTTTAGGTTAGAAGTGTTTGCTGCCGGCTAGTTAGTGTTAGTTAGCTCACTACTAGCGGACTGAACTCACTCATGGTGAAGGAAGTTCCCGATGACTCAAAGACCAGGCAGCAGGCTTTGTGGAATCTTCTGACTACATGATTCACCCAAGATGCTGATGCCCAAGAAGAATTGTATAGCCATCTACGAACTCCTCTTCAAGGAGGGAGTGATGATGGCAAAAAAAGGATGTGCATCTGGCTAAGCACCCGGAGCTGGCCGATAACAATGTGCCCAACATTCACGTTGTGAAGGCCATGCAGGGCATCCAGTACCTGAGGGACTTCCTGCATCTGCCCCCAGAGATTGTTCCTGCCACTCTGCGTCGCCAGATGCGTCCTGAGACCGCTAGGCCCAGGCCTAAAGGTATGGAGGGTGAGAGAGCTGAGAGGCCAGCCAAGTTTAACCGTGAAGGAGGAGACCGAGACAACTAGACGTTCTGTTGCACCACCTGGTGTAGACAAGAAGGCTGAAGCAGGTGCTGGTGCAGATGAGTTCCAATTCAGAGGCGGTTTTGGACGTGGCAGAGGACAGCAACCACCACAGGAGTAAAGCAGACTGTTCTTGTACAGCATAATAAAAGGTGATTGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU934040 lncRNA upstream 14582 56087603 ~ 56088983 (+) True G821433
TU934012 lncRNA upstream 47594 56052203 ~ 56055971 (+) False G821408
TU934013 lncRNA upstream 47594 56052203 ~ 56055971 (+) True G821408
TU933983 lncRNA upstream 75788 55998969 ~ 56027777 (+) True G821380
TU933997 lncRNA upstream 83994 56018624 ~ 56019571 (+) True G821393
TU934070 lncRNA downstream 32772 56144816 ~ 56145130 (+) True G821459
TU934075 lncRNA downstream 39142 56151186 ~ 56151527 (+) True G821464
TU934077 lncRNA downstream 40483 56152527 ~ 56152755 (+) True G821466
TU934088 lncRNA downstream 50930 56162974 ~ 56163181 (+) True G821476
TU934089 lncRNA downstream 51377 56163421 ~ 56163755 (+) True G821477
XM_021616317.2 mRNA upstream 51577 56042832 ~ 56051988 (+) True LOC110532424
XM_036988387.1 mRNA upstream 68412 56028537 ~ 56035153 (+) True LOC110532421
XM_021616308.2 mRNA upstream 143695 55957961 ~ 55959870 (+) False taf11
XM_021616309.2 mRNA upstream 143695 55957964 ~ 55959870 (+) True taf11
LOC110531209 mRNA upstream 273981 55827431 ~ 55829584 (+) True LOC110531209
XM_021616321.2 mRNA downstream 6961 56119005 ~ 56124213 (+) False LOC110532426
XM_021616322.2 mRNA downstream 13710 56125754 ~ 56130413 (+) False LOC110532427
XM_036988394.1 mRNA downstream 134666 56246710 ~ 56463547 (+) True LOC110531212
XM_036988396.1 mRNA downstream 478647 56590691 ~ 56641983 (+) False LOC110532433
XM_036988398.1 mRNA downstream 478647 56590691 ~ 56641983 (+) False LOC110532433
TU934014 other upstream 39910 56061706 ~ 56063655 (+) True G821409
TU933965 other upstream 128249 55974042 ~ 55975316 (+) True G821363
TU933495 other upstream 405587 55697640 ~ 55697978 (+) True G820944
TU933425 other upstream 488164 55531037 ~ 55615401 (+) False dlgap4a
TU933208 other upstream 869767 55233258 ~ 55233798 (+) True G820665
TU934051 other downstream 7075 56119119 ~ 56124185 (+) True LOC110532426
TU934050 other downstream 14417 56126461 ~ 56132936 (+) True LOC110532427
TU934932 other downstream 460563 56572607 ~ 56572957 (+) True G822283
TU935064 other downstream 650581 56762625 ~ 56763540 (+) True G822404
TU935738 other downstream 1230357 57342401 ~ 57915534 (+) False LOC110532462

Expression Profile