RNA id: XM_021616321.2


Basic Information

Item Value
RNA id XM_021616321.2
length 1797
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110532426
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56119005 ~ 56124213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTTTTCCGTTCgctccactgtgtctgtgggTGACTTCATTGTCTTTGCCATGGATTGCTGGAACGGAGCCAGACCAAATCACACACACGTGACCGGTCTTTCTGGGAATGTTCCTGGAAAGACGTGCGCTCGATCAACAATTAAAACTAGAGAAGGAAACAttgtaaaatgtttttaaaaaacaacTAATCGCCCAGACCGATAGAGCGTCAAATCGTGCATTTAGACGGCAGGCAGCTCGTGGGGAACATTGTGGATGATTTGTTGATTATATTCCTGAAATGTTCTGATTATCCAGCTGGAAACAAAACAAGTGCTCCAGAACAGATCTTTCCATCGTTGTGTCCGCTCAAGGCTTCAATCATGAATTTCGGAGGACATGACCTGTTTAACCAGTGCAGTGCGTGTCTGAAATAGCAGACAGTGACTCCTACCAGACCTTGGGTCAACAAACAAATTGAGAACCATTTGGACGCTCAAATCCTCAAGTGTTCCACTGCTGTCATGCACAATGATTATACCGATCAGTGCCCCTGACAAATCCCTCAACGCAATCCGGCTAAAGGACTGCAAGCTGGAGTCATGTCAAAGTGCGTCAAGACTAAGAGAGGATGTCGCACTGTTGCAAAGAGCCATGTCTCATCTTCGGGAGTCAGTGTTCTTCAGGCTGGTACTGGGGCCCCCTGACAGCTACTCAGGCTAAACAAGTTCTGAATAAAGCTCCAGAGGGTATTTTCCTGTTGCGGGACATCTCCTACCAGGGCTACCTCCTCACCCTGTCTGTGAAGACCAGCCTTGGCCCCACACACCTCCACATAGAGCATGGCACTGGCATGTTTGGCTTCGACTCTGTGATTGTGGCATGGCCACGAATGCGGAGGGTTGAGGGGGCTGTAGATCTGGTGCAGCACTATGCCTTGACTTATAAGCTTCTGGTCAGTTAAAAGGAGAGACTCAGGGCTCAAAAGGAAACAGGAGGAGCAACCCATCCGCCCCCAGTAGAGAGAACTCTGCAGCTCAAGCTCATCTGCCCCCTCCATAAAGTTTTCCCTAGTCTCCAGCACTTTTGCCGCGTCACTATTAACCAGCATTCTCGCTGTCACCAGGACTTACCCTTGCCAGGGTGGCTACATGACCTCTTGCTGGAATACCCTTTTGTGCTGTAGGAAATGCTCATCTGATGTTTTGATATTCCTGAATTAGACTTTAATTGGACATCAATGATCAATGTCCTAATGTTGTGTTGAAAATTGGCTCTCAGCTGTATACATGCTGGTTCCTAGATGATCATTTAGCAAATCCCTACGTGTATTTTTACATTTATACTTGAGTCCTCtatcagatgcttttatccagagcgacttacaggagcaattagggttaagtgccctgTTCTAGGGatcattgacagatttttcacctagtcggctctgggatttgaactagcagccttttggttactggcccaacgctgttAACTGCTATGTATCAGAGGCAAAATTCACCTACCTATCACCATCTTAGGTTAGTTAAACTAAATTAACAATTGAGAGTACTGAAATggaatgctgaaataaataacaGTTAGAAGAACATGACAAAGGGGAATAGATAAAAGCTTTGTTATTGTTCTATAAACAGTATTAAAGAACGATTATTGTATAATGGACCACATTAATTAAAAACACTATACAGTATTCAACCAATTCACCTGATGTACCATGGCTTTTATTATGGGGGATTTTGTTATGCTGAtgtgaaaagggctttataaataaattggatTGAATTTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU934058 lncRNA upstream 6997 56103492 ~ 56112008 (+) True LOC110532428
TU934040 lncRNA upstream 30022 56087603 ~ 56088983 (+) True G821433
TU934012 lncRNA upstream 63034 56052203 ~ 56055971 (+) False G821408
TU934013 lncRNA upstream 63034 56052203 ~ 56055971 (+) True G821408
TU933983 lncRNA upstream 91228 55998969 ~ 56027777 (+) True G821380
TU934070 lncRNA downstream 20603 56144816 ~ 56145130 (+) True G821459
TU934075 lncRNA downstream 26973 56151186 ~ 56151527 (+) True G821464
TU934077 lncRNA downstream 28314 56152527 ~ 56152755 (+) True G821466
TU934088 lncRNA downstream 38761 56162974 ~ 56163181 (+) True G821476
TU934089 lncRNA downstream 39208 56163421 ~ 56163755 (+) True G821477
LOC110532428 mRNA upstream 6961 56103565 ~ 56112044 (+) False LOC110532428
XM_021616317.2 mRNA upstream 67017 56042832 ~ 56051988 (+) True LOC110532424
XM_036988387.1 mRNA upstream 83852 56028537 ~ 56035153 (+) True LOC110532421
XM_021616308.2 mRNA upstream 159135 55957961 ~ 55959870 (+) False taf11
XM_021616309.2 mRNA upstream 159135 55957964 ~ 55959870 (+) True taf11
XM_021616322.2 mRNA downstream 1541 56125754 ~ 56130413 (+) False LOC110532427
XM_036988394.1 mRNA downstream 122497 56246710 ~ 56463547 (+) True LOC110531212
XM_036988396.1 mRNA downstream 466478 56590691 ~ 56641983 (+) False LOC110532433
XM_036988398.1 mRNA downstream 466478 56590691 ~ 56641983 (+) False LOC110532433
XM_036988397.1 mRNA downstream 466479 56590692 ~ 56641983 (+) False LOC110532433
TU934014 other upstream 55350 56061706 ~ 56063655 (+) True G821409
TU933965 other upstream 143689 55974042 ~ 55975316 (+) True G821363
TU933495 other upstream 421027 55697640 ~ 55697978 (+) True G820944
TU933425 other upstream 503604 55531037 ~ 55615401 (+) False dlgap4a
TU933208 other upstream 885207 55233258 ~ 55233798 (+) True G820665
TU934050 other downstream 2248 56126461 ~ 56132936 (+) True LOC110532427
TU934932 other downstream 448394 56572607 ~ 56572957 (+) True G822283
TU935064 other downstream 638412 56762625 ~ 56763540 (+) True G822404
TU935738 other downstream 1218188 57342401 ~ 57915534 (+) False LOC110532462
TU936157 other downstream 1904406 58028619 ~ 58028857 (+) True G823373

Expression Profile