RNA id: XM_036988394.1


Basic Information

Item Value
RNA id XM_036988394.1
length 5478
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110531212
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56246710 ~ 56463547 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGTCTTTCTGAGCTCGAGGTGGGAGGCCATGTCTGAGTACCTGCAGGCCTGCTTGGGCTGACTCTAGACTTTCTGCCTGCTccaggggggtgagagagagaagataaacACCCCTGACTGGCTCTGGAGGAGCATAAAAGAGGAGGCTTATATCCCACCTTTGTTCTCCCTAAGATGTCTCTCCACGGACCCACTCCCGACTCGCCCCAAACTGTTTAGTAACTCCACACCGTCTGCATTCCCCATCAGCCGGGAGAGAGAATACCCCACAAGgaagtggatagagagagagagagagagaggtgtcacaGCTGTAGACTGCAGCAgcaccagcagagagagagagagagcaagctaaTTGGCATTACTGAGATGGTGTCAGAGCTGAGAGACATGAGAAGTGACTTCTGAAGAGAGTTCTGTTCTCTGAAGGATATTGCAGCTGATCTACAGGACATTTGTTTGtgggttttttttcttcatttttcgAAGAGACTCAATTTAGTTGGATGCAGGTTTAGCTTAGCCTTCCGTCATGAATCTTCTGGGAAGCTGTATGAAGAGGGGGCAGACTGGCTGCCACAGAGGTGGTCTGGCTTGGCCCTGTCAGGTCCTGCTCCTGGCCTGCTGTATCCTGGTAGTCCTGGGGGCCAAGCCAAAGACACCTGGCCACAAACACCTCAACTCCATCCGCATAGATGGGGATATCTCTCTTGGTGGCCTCTTCCCGGTACACGCCAGAGGCAACGATGGTAAAGCCTGTGGGGAGCTGAAGAAGGAGAAGGGGATCCACAGACTGGAGGCCATGCTGTTTGCACTGGACCGCATCAACAATGACCATGAGCTGCTGCCCAACATCACTCTGGGTGCCAGGATCCTGGATACCTGTTCCCGGGACACCCACGCCCTGGAGCAGTCGCTCACCTTCGTCCAGGCGCTCATCGAGAAGGACGGGACGGACATCAAGTGCCTGAGCGGCGGGCCGCCCATCATCACCAAGCCTGAGAGGGTGGTGGGTGTCATCGGGGCCTCCGCCAGCTCTGTGTCAATCATGGTTGCCAATATCCTGCGGCTCTTCAGGATCCCCCAGGTGAGCTATGCCTCCACGGCTCCGGAGCTGAGTGATAACACGCGCTACGACTTCTTCTCCCGAGTCGTGCCCCCGGACACCTACCAGGCACAGGCCATGGTGGATATAGTTAAAGCCATGCGCTGGAATTATGTCTCCACAGTAGCATCAGAGGGTAACTATGGAGAAAGCGGTGTGGATGCCTTCATACAGAAGTCCCGCGAAGAGGGAGGTGTGTGCATCTCTCAGTCAGTGAAGATACCACGAGAACCTAAGCCTGGAGAGTTTGACAAGATCATCCGCAGACTGTCAGAGAACCCCAATGCACGGGTTGTTATTCTCTTTGCCAATGAAGATGACATTAGGCGGCTTCTTCAAGCAGCTAAGAAGGACAACCAGACAGGACATTTCATATGGGTGGGTTCAGACAGCTGGGGGTCTAAGATCTCCCCCATACTCAACCAGGAGGAGATGGCAGAAGGTGCTGTTACCATTCTACCTAAACGGCAGTCCATCCGAGGGTTTGATCGCTACTTTATCAGCAGAACTTTGGACAACAACAGAAGGAATATTTGGTTTGCAGAGTTCTGGGAAAACAACTTTCAGTGCAAACTCAGTCGACATGCTCTGAAGAAAGGATCCGGCATCAAAAAGTGCACAAACCACGAGCGGATCAGGAAGGACTCGTCCTATGAGCAGGAGGGAAAGGTCCAGTTTGTGGTCGACGCAGTCTACGCCATGGCTCATGCCCTGCACAACATGCACAAGGAGCTCTGTCCAGGCAAAGTGGGCCTCTGCTCCAAAATGGAAACCATCAATGGAACCATGTTGCTCAAGTTCATCCGCAAAGTCAACTTTACAGGAATTGCTGGCACTCCAGTGATCTTCAATGTGAACGGAGATGCCCCTGGTCGCTATGAGATTTACCAGTACCAGATGAAACACAACACCACAGAGTATAAGATCATCGGCCACTGGGCAGACCAGCTCCATTTAGATACTAAGGAGATGTGGTGGCCTGGTGGGACACTCCAGGTACCCCAGTCTATCTGCAGCCAGCCATGTTGTCCTGGGGAGAGGAAGAAAACAGTCAAAGGTGTCCCCTGCTGTTGGCACTGTGAGCGCTGTGATGGCTACCAGTACCAGGCCGACACCTACAGCTGTAAGATGTGCCGCTTTGACCTGCGGCCCAATGAGAACCACACGGCCTGTGAAGCCATCCCCATCGTCAAGCTGGAGTGGAGTTCCCCTTGGGCTGTCATCCCTGTACTCATTGCTGTGCTGGGCATCATGGCCACCATGTTTGTGGTGGGCACCTTCATCCGCTACAACGACACACCCATCGTGAAGGCGTCAGGGCGCGAACTCAGCTATGTGCTGCTGACGGGCATCTTCCTGTGCTATGCCACCACCTTCCTCATGATCGCTGCCCCTGACGTTGGCATCTGCTCCCTGCGACGGATCTTCCTTGGTCTGGGGATGAGCATTAGCTATGCAGCGCTGCTCACTAAGACCAACCGTATCTATCGCATCTTTGAGCAGGGGAAGATGTCAGTGAGCACCCCAAGGTTCATCTCCCCGGCCTCCCAGCTGGTCATCACCTTCAGCCTGATCTCAGTTCAGCTCCTGGGGGTGTGTATCTGGTTTGGTGTTGACCCGTCTCAGGCTATCATTGACTATGAGGACCAACGTACGTCCAACCCGGACATGGCCCGTGGCGTGCTCAAATGTGACATCTCAGACCTTTCTCTGATCTGCCTGCTTGGCTTCAGCATGCTGCTCATGGTCACCTGTACGGTGTATGCCATCAAGACCCGGGGGGTGCCAGAGACCTTCAACGAGGCCAAGCCCATCGGCTTCACCATGTACACCACCTGTATCGTGTGGCTAGCCTTCATACCCATCTTCTTTGGGACCTCGCAGTCAACAGAAAAGATGTACATCCAGACCACGACTTTGACCATCTCTGTGAGCCTGAGTGCCTCTGTGTCTCTGGGAATGCTCTACATGCCAAAGGTCTACGTGGTCCTTTTCCACCCGGAGCAGAACGTGCCCAATCGCAAGCGCAGCCTCAAGGCTGTAGTCACTGCAGCCACCATGTCCAACAAGTTCCCCACCAAGGGTGGCCTCCGTCCCAACGGAGAGGCCAAGTCTGAGCTCTGTGAAAGCCTGGAGACACAAGCATTGGCCTCCAAGCAGACATACATCAGCTACAGTAACCATGCCATCtaagagacagacagtggaaCTCCGGCTTGGAAGAATAGCAAGGACCGTGGGGTGAACAAACACCAAAAACTGGAGCACCAAGATGCAAGAGCAGTGGCAAAGGTGGAGAAATGAGAATGAGAATAATCACTCAACATACAGAACTGATGTCACTATTTTCAAGAGGACAAGGCAAGGCAAATATATTGAATGCCAAACAAAAGCAGTGCAGGGTGGGGAAGTGGGGATGTCAGGTAGACAGTGATGTCTCCCCTCCCCACCCTCCTTGTGACATGTCAGATACACCAGGCAATTACATTTCCAAATTCAGTCAGAGCCAATCACTTCAATTCAGTGTTTTCCTTTTGGAGTTTATATAACAGCATTTCTCTTCTGGTGTTTTGTCTGAAGCTGACTAACACCCTCTTCGGTAAGAGTGAATTGAGTTTTCTCTTTGTGTGCAGCagtgttgtgtctctctctaccagtAGTAATGTGCAATTATTTGCCTCCCTTTCTTCTCTGTCCTTTCCAATGCGGGTGAATTGCTGAACATAATATCAAATTAGTCAAAGCTGTCAAAAGTAGATGAAAAAGTGTGTTGTTGGTGTGGGGTAAGTCTTCATTCAAGgccaaaataaacaaatattaaTACTCAGGCTctgtaacattaacattatgtTATCATCATTTTAATGAAGGTCATAGTTGTGAAACAGAGCCAACAAGTATGCACCTTTCCAACCTTTAACATGTATGAATATTCAGTGTTACAGCAGGGGTCCAATAAGTGTTTTCTTAACATTTTGTACATCAAATAAAGCGATGGATTTTCACAGATGATAGCGATATCATAGCTGACACCATCTTTACGGGCTAATATACAGTCATAGAGCATGCCTGTGGGAGCATAATGTGTACTGTGCTGTGTTTTCAAAATCTATTAAATCCAACATGTGTGAGGATTGTAGTTCAACAGACACAGTGGCATTATCATGTTTTGACTATTACACACATGGTACCTTATGCAGATTAATGCAGATTAGAATACATGAAAAGGCATAAGAACTGGCTAAAAAGTAAAAGTATTGTATGTTCAACCTCGCCTacttttcagtgaaatacagctTCAAGACTACAGCCCATAGACAGCCATGCACTGCCTCAGTGTATTCATGCTGGTATTGTCACATGTGAGAATATCATTTCATGGTCTTGTTCCGTTAGAAATTCAGCAGTTCCATCTCAACGTGATGAATTTGGAATCTGTAACAGATATGTCTAACATATAGCTAGCTATTGGCGATACGTTAAGTAATGGTACAAAACACTCTTTGGAGCATCAGCAGTGTACTCTGTCTAGTGTGCACCATCCTTGGTTACGTTATCGACTAATTTGCCATGCACCTGTGATTTCCGTAATAGTGCTTGTTCCCTTAATGTTGTTCAGAGAAAGGAAGTCCCTCCACATCCACATGAGGGAATTGGGTTTAAAATCCCCTAAGGACGATATACATGCCTGtgtggaaatctaattagcataataaaaaaatccccataagaatctgtcagtttaagctagagatatctgtttgtttgcattggatatatctcaatccaccgcatccagCAATTTAACACTTCTGCATCTGCgttgaaaggtgacagagttagagAGGTGTTtgacagaccatgagacatcccgaaataACAATTTGGACGCTACAATTAATGGTCTTTTCACAAAACcgtctgaacggtttggcctaaaagctattatgacccctctatgcaaagatgagactctcacgaacaggatgttgtttcctgttttggaATAACACGAACATGTCAGtggttttgctctacgacccctaCAAGGGACCCCCTGTATCGTCTGAAGTCCGTACGACCGATCTACCAACATCTGTCTGTAGAGTCCGAACAGTTCGGGCTATGTACTAATAACCTGTGTAAAGGTGAGACTCTGACAAACACGTAAATGTTGGTTTGTTGCTCTTGGATGCGCACAGACCTcccaagactcgtctgaaggtcctcCGGTACCAGATGACAAATGTAATggaagtatatacagtgcattcggaaagtattcagaaccctttacTTTTTTCCTGATCAacccacacacaatacccaataatgacaaagtgaaaacaggtttttagaaatatttgc

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04607 GRM4; metabotropic glutamate receptor 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU934132 lncRNA upstream 15301 56225511 ~ 56231409 (+) True G821520
TU934089 lncRNA upstream 82955 56163421 ~ 56163755 (+) True G821477
TU934088 lncRNA upstream 83529 56162974 ~ 56163181 (+) True G821476
TU934077 lncRNA upstream 93955 56152527 ~ 56152755 (+) True G821466
TU934075 lncRNA upstream 95183 56151186 ~ 56151527 (+) True G821464
TU934827 lncRNA downstream 40667 56504214 ~ 56504475 (+) True G822181
TU934829 lncRNA downstream 41566 56505113 ~ 56505347 (+) True G822183
TU934833 lncRNA downstream 43863 56507410 ~ 56507616 (+) True G822187
TU934867 lncRNA downstream 65189 56528736 ~ 56537038 (+) True G822220
TU934917 lncRNA downstream 99115 56562662 ~ 56562889 (+) True G822268
XM_021616322.2 mRNA upstream 116297 56125754 ~ 56130413 (+) False LOC110532427
XM_021616321.2 mRNA upstream 122497 56119005 ~ 56124213 (+) False LOC110532426
LOC110532428 mRNA upstream 134666 56103565 ~ 56112044 (+) False LOC110532428
XM_021616317.2 mRNA upstream 194722 56042832 ~ 56051988 (+) True LOC110532424
XM_036988387.1 mRNA upstream 211557 56028537 ~ 56035153 (+) True LOC110532421
XM_036988396.1 mRNA downstream 127144 56590691 ~ 56641983 (+) False LOC110532433
XM_036988398.1 mRNA downstream 127144 56590691 ~ 56641983 (+) False LOC110532433
XM_036988397.1 mRNA downstream 127145 56590692 ~ 56641983 (+) False LOC110532433
XM_036988399.1 mRNA downstream 127145 56590692 ~ 56641983 (+) False LOC110532433
XM_036988400.1 mRNA downstream 127145 56590692 ~ 56641983 (+) False LOC110532433
TU934050 other upstream 113774 56126461 ~ 56132936 (+) True LOC110532427
TU934051 other upstream 122525 56119119 ~ 56124185 (+) True LOC110532426
TU934014 other upstream 183055 56061706 ~ 56063655 (+) True G821409
TU933965 other upstream 271394 55974042 ~ 55975316 (+) True G821363
TU933495 other upstream 548732 55697640 ~ 55697978 (+) True G820944
TU934932 other downstream 109060 56572607 ~ 56572957 (+) True G822283
TU935064 other downstream 299078 56762625 ~ 56763540 (+) True G822404
TU935738 other downstream 878854 57342401 ~ 57915534 (+) False LOC110532462
TU936157 other downstream 1565072 58028619 ~ 58028857 (+) True G823373
TU936266 other downstream 1741716 58205263 ~ 58244984 (+) True G823467

Expression Profile