RNA id: XM_036988402.1


Basic Information

Item Value
RNA id XM_036988402.1
length 5493
RNA type mRNA
GC content 0.48
exon number 31
gene id LOC110532433
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56590691 ~ 56641983 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCCTCCCCTTTTGAGGAACCGTCTGCCTAAATACAGGGAGAGCCTCCTCTTGATCAGAATCACTGTGTCTGGTTACTAACAGGCTGGCAGAGAAATCAAACCCGTTTCCCCCAAAGGATTTACTACAAAGCAAAACCTTGAGGGCAGTGAGAAAATACCCTAAGAAATACCCAAGGAAATACCCAAGCCCTCAAATACAGTCTGAGTTAGACTAACAGTACGTGAGCAGTAGACAGGCGACAGGCAGAGAGCCCCGTGATTGACTGAGCTTTTGGATCACACACACATATCTGCCaagatgtggaagaagtcaaaggTCACAGACCAGACGGCCACTGGCCAAGGAGGCCCTTCAGAGGCTGAACAGGAAGAAGAGAAAAAAGCTGGCATCAAGAAGAGGTCCAAGGTCCCTGGGGTCATGATCACGCAGTTTATAGAGGTTCTACCGGAGGGCAAGAGCACCCCAGACTTCCTTCGCAAACCCATTGCTCTAACCATTCAAGAGGGTAAATTAGCCATTTTCAAAGCCAATGTGTGTGGGGATCCCAAACCAGAGGTGACTTGGGGAAGAGCTAAGGGGGATATGTCAGACACTGAAACATTTCAAAAGAAATATGATGAAGCTACTGGTGAATATACTTTAGAGATTCACAGAGTGTCTGGGGAGGAGGCAGACACTTACAAATGCTATGCTATCAATGAATATGGCAAGGCTATTTGCACAGCAGCATTGAATGTGATTGAGGTTGGATTCAAGAAGAAGAAGGCCATGGAGCAGTTAGAAGACATAGGTTCAGTAGATCCAGCAGAGTTCAGGAAATTGCTCAGAAAAAGGAAGGGAGTGGACAAAGAGGAAGCTGTGAAAGAACCTGGAGAAATCGATGAAAGGTTCTGGGAAATCATCATGAGTGCAGACAGGAAGGACTATGAACGAATCTGCGCTGAGTTTGGTGTCAAAGACTTCCGTGTAATGCTGAAGAAACTCAGTGAGAAGaaaaaggagagacaggaggaacaGGCCAAGTATATTGAGACCATCAATAACCTGAAACATATTGATATTAAAGGACTAGGCATTGCTTCGTTTGAGTTTGACCTTGAGCTCAAAGACCTCACCAGTAGGATTTTCCTCTACAAGGATGGTGTAATGATTCCCTATAGTGATGAAGAAGAAATGAAACACAGCTTAAAGACTGTTGGGAAGAAGTTAATCTTCAGTGTGCGGGACCTTAAGGCAGAGGATGCTGGGCTCTATCAGGTGGATGTTGAGGAGGTCAATCTGTTCTCTACAGACTTCAAGATTCCCACAGTGGATTTCATTGTCAAGATCCAGGAGGTGAAggccaaagagagagaggatgctaTGTTTGAGTGTGTCCTGTCACATCCCTGGCCCAGAATCAAATGGATGGGCAAGAATGCCActctggaggagggagagaaatacaCTATAACTGTATCAGAAGACAAGCTGATCCACAGACTGCTAATAAAGGACTGTAGCCAGCTGGACAAGGGCATCTACTCTGCTGCGGCAGGAATCAAGACATGCAGTGCCTGGCTGATAGTGGAAGctgacaGCGACCCTGCTTCCCATGGTAAAAAGAAGACCCGTAAAACAACCCAGGCTGGTGGAACAGGGTTGGATCTGGGGAAACTGGCTCAAGAGCAGCAGGAAAAACTGGCGAAGGAAAGGCAGGAGCAGATCGACGCTGCAAACAAAGCCAGAGCGGAGGAGGAGAGGCTTGCCCGAGAGGCACTCCTGGCACCCCCTCCTCCTGATACTGGGGATGGAGACAGTGGGGAAGGCGGAGACAGTGGGGAAGGCAAAGACACCGGAGATGGAAAAAACAAGTCTAAAAGTGGATCAAACAAATCCAAAGATGGTGGAAAATCAGTTGGCAAATCAGTTGGCGAAATGAAAGACTCTGAAAAGGAAGAAGATGACAAGAAGAACAAGAAATCCACTGATGATTCTGACAAAGGCAAAGGAACATCAAATTATGATATTGACCCAAACGCAAATGGGGAAGGCGATGGAGACAGTAAGGGACGTAAGGGCCATCCTGGTCCACTTATACCAGACGCAGTCATTGGTTCTTCTCTCCACAACGATGCTGAGAAGGAAAGAGATGACAAGTACAAGAAATCCACTGATGTTTCGGACAAAGGCAAAGGAGCATCAAACAATGACATTGACCCAAATGCAAACGGGGAAGGCGATGGAGACAGTAAGGGACGTAAGGGCCATCCTGGTCCACTTATACCAGACACAGTCATTGATCCCAATGGGCAAAGTGGTACAGGAGAAACGGAGGAGTACACTGATGCATCTGGcaagcgttcagagcgcacaagGCAAGGCCCACTGCTGAAGGACACAGTGATTGATCCCAATGCTCAAAGTGGTACAGAAGAAACTGAGCAGTACACTGATGTGTCTGGcaagcgttcagagcgcacaagGCAAGGCCCACTGCTGAAGGACACAGTGATTGATCCAGGAGTTCAGTTCGTAAGCGGGTTGTCAAATGTCCATGCCCTCATTGGCCAGCCTGCAGAACTGATGTGTAAGCTGAGCAATGATAATTGTGAAGGGACCTGGTACAGAGATAGCAAGAAGTTGACAGCAGATGATGGACACATAATGTCCAGAGATGGTGCAAACCACAAGCTGGTCATCAACCGTTgtcaggaggaagactctggaaAATACCGCTTTGAGGCAGACGGGCGTAAAACTGAGGCAATGCTGAATGTGGAAGACCCTCCCAGGTTTGACCCTGATGATCTGTCTGCGTTCTCTCAGCCGGTCATAGTCAAAGTGGGGAATAGCACCACTTTCAAACTGCCCTTTGTGGGCCGCGAGCCCATGAAGATCCAGTGGTACAGAAATGGAGAGGAGCTCCTGGACGATAACACCACCAAGATAGAGAAGTCCTTCACCCAAAGCCGCCTGCTCCTCAGCAAGTGCCAGCGCAAAGACACTGGAGAGATCAAGATCAAGCTCAAGAACGAACATGGTACCATGGAGGCTATCTCAAGACTCATTGTCCTCGACAAACCCACTGCGCCCCAGGGCCCTGTGGAGGTCCTCGAAAGCACAGCCTCTTGTATTCATATCAAATGGAGAGCTCCAAAGGACGACGGTGGCTGCCCAGTAATAAACTACAACCTGGAGCGCCAGCAAGTTGGCCGCAACACTTGGAAGAAGCTGGGGGACATCCCTGGCGTGCCTGAATACAAGGATAACGACGTGGAACACGGCAGGAAGTATTGCTATCGTATCAGGGTGGTCACCGAGGAGGGCGTTAGTGAGATGATGGAGACTGATGACCTCACGGCTGGCACCTTGGCCTTTCCTAGCAGCCCTGCCCCACCAAAAGTGGCTAGTGCTTTTAACAACTGCATCAACCTGACATGGTCTACCCCGACCGACACTGGCGGGTCTCGCATCCTGGGCTACAACTTGGAAAAACGCAAGAAGGGGAGTAATCTTTGGAGTCCTGTCAACCCTACAGATGAGCCTATCCAAGAAAAGAAACGTGCAGTGACAGATGTTGTAGCAGGGAACGAATACGAGTTCAGAGTTTATGCTATCAATATCTCTGGACTCAGCGAGCCCAGTTCCCCTTCAGAGTTTATTTTCGCAAAAGACCCAAAGAATCCCCCAGGGAAAGTGGAAGATCTGAAGGTGGCAGACACATCCTACACCGCCCTCTCCCTGTCCTGGAACAAACCCACAGAGGAAGTGGGGGTCCAGGATGAGGCCAAAGGGTATTTTAtagaggtcaggcaggctgagTGCATAGACTGGACCCGCTGTAACATCACCCCCATCATCTTGACCACCTTCACTGTGAAAAGCCTGAAGGCCATGGCCATGTACTGGATCAGGGTGATCGCTATCAATGACGGAGGAGAAGGAGTGCCCCAGGATCTGGACAACTACATCCTGGCCATGCCTCCACCTGTGAGACCATGCTTCACCGATAATAAGATGAAGAGTTTCATGGTGGTGAGAGCTGGAAATTCTGCCAGGATCCTCTTAAACTTTGAGGCATCCCCATGGCCAGAAGTCATGTGGCTGAAGGACGATGTTCCTTTGCTGAAGCGGGTCAATATCTCCAACTCTGAATCGTCATCTCAACTTCTGATCACTTCCTCTGAGCGCTCTGATTCAGGGATCTACACCATAGTGGTCAAAAATCTAGTGGGCCAGGAGAGCTTCAGCGTGGAGGTCAGGGTTACAgATGATCCCAAGCCTCCAGGACCAGTAGAACTTGAGGAGAACGTCCCAGGCACTGTGACTGTGATTTGGGAGCCATCCCCTGATGAGAAGCGTGACGACCACCTTCACTACTCTGTGTCTAAACGGGACTCCACCAAAGGCTCATGGAGCATGGTGGCCGACCGGCTCTTCAACAACAAGTTCACGGCTTGTAACATTATGCCTGGCAGGGAGTACCACTTCAGGGTCTACGCCAAGAATGACATGGGCATGTCTGCTCCGTCTGAGTCTCCCACTTGGGGAAGCGAGAGGAGGAAAGACACATTTGTGGTAAACATGCCAGCCTACAAAACGTGTGATTTGCGGACCGCTCCAGCCTTCCTTGTGCCACTGAGACAGCACACAGCACCCAAAGGCTACGAGTGCTATATGAGCTGTGCCATAAAGGGAAATCCCAAGCCTCGCGTCACTTGGTACCGCAACAACATCAGCCTCAACACTAACACCAACTACTTGATCACAAACATCTGTGGTGTCTGCTCCTTGCTGATACTCCGTGTGACCCCCAAAGACTGGGGCGAGTACAGCATCCAAATAGAAAGTTCCCTGGGGAGGGCCGAGTCCTCCACCAAACTCACAGTCAGAGAATGAAGAAACATTTTACAGTGCTTCAGTATGTAGAGGCGTTATTATGTATCAAGGTGGAAAATGTCAATTTTGTTATATGATTGAATTAAGTTATTTTCCAAAATGCATGACTGTACTGCTTGTAAGACATGCACTGTGTTTGTTAAGGCTAGTAAGTAAAAATGACAAGAGTGATCGTTTTTGATCATTATGTTTGATGTGGATATTTCACAACCTAAAAGGACCCGAATCGAGATGACATTGACCCATCCTGGGAGTTGGGGTTTCCTAGACTTAAATTAATTCTGATCCTAAATCACTTTATTACCAAAACCCTCTCCAATTTTGTTGCAATGTTAAACATACTAATTTCATGCTGAATAATGTTGACATTCCGAATAAAAACATACTAGAAAGTGACCgaaagtgtacacacacacacacacatacagaaagtGTTGTGTAAAGCCTGTGGAAGGGATGGCAATAGACATGAATGCAGTGGACAGTTTACTGTAGGTCCCATGAAATACTAAATATGACCACAGAAAATAACTGAGCTGTGCTGTCAATTATTTTGAGAACTCAACTATGTCACTTGTAACATGCAATGCAAATAAAGGGTTTGGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU934940 lncRNA upstream 12036 56578443 ~ 56578656 (+) True G822291
TU934923 lncRNA upstream 24865 56565597 ~ 56565827 (+) True G822274
TU934919 lncRNA upstream 27027 56563444 ~ 56563665 (+) True G822270
TU934918 lncRNA upstream 27376 56563113 ~ 56563316 (+) True G822269
TU934917 lncRNA upstream 27803 56562662 ~ 56562889 (+) True G822268
TU935006 lncRNA downstream 8988 56650971 ~ 56651860 (+) True LOC110532435
TU935009 lncRNA downstream 10544 56652527 ~ 56654815 (+) True G822354
TU935017 lncRNA downstream 66580 56708563 ~ 56714483 (+) True G822360
TU935019 lncRNA downstream 75147 56717130 ~ 56718162 (+) True G822362
TU935018 lncRNA downstream 79824 56721807 ~ 56729664 (+) True G822361
XM_036988394.1 mRNA upstream 127145 56246710 ~ 56463547 (+) True LOC110531212
XM_021616322.2 mRNA upstream 460279 56125754 ~ 56130413 (+) False LOC110532427
XM_021616321.2 mRNA upstream 466479 56119005 ~ 56124213 (+) False LOC110532426
LOC110532428 mRNA upstream 478648 56103565 ~ 56112044 (+) False LOC110532428
XM_021616317.2 mRNA upstream 538704 56042832 ~ 56051988 (+) True LOC110532424
XM_021616328.2 mRNA downstream 3797 56645780 ~ 56652084 (+) False LOC110532435
XM_021616329.2 mRNA downstream 3799 56645782 ~ 56652084 (+) False LOC110532435
XM_021616327.2 mRNA downstream 3801 56645784 ~ 56652084 (+) False LOC110532435
XM_036988405.1 mRNA downstream 6117 56648100 ~ 56652084 (+) False LOC110532435
XM_036988410.1 mRNA downstream 19774 56661757 ~ 56702015 (+) False LOC110532437
TU934932 other upstream 17735 56572607 ~ 56572957 (+) True G822283
TU934050 other upstream 457756 56126461 ~ 56132936 (+) True LOC110532427
TU934051 other upstream 466507 56119119 ~ 56124185 (+) True LOC110532426
TU934014 other upstream 527037 56061706 ~ 56063655 (+) True G821409
TU933965 other upstream 615376 55974042 ~ 55975316 (+) True G821363
TU935064 other downstream 120642 56762625 ~ 56763540 (+) True G822404
TU935738 other downstream 700418 57342401 ~ 57915534 (+) False LOC110532462
TU936157 other downstream 1386636 58028619 ~ 58028857 (+) True G823373
TU936266 other downstream 1563280 58205263 ~ 58244984 (+) True G823467
TU936255 other downstream 1605131 58247114 ~ 58250307 (+) True G823459

Expression Profile