RNA id: XM_036988413.1



Basic Information


Item Value
RNA id XM_036988413.1
length 1127
RNA type mRNA
GC content 0.56
exon number 10
gene id LOC110532437
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56661757 ~ 56708327 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGCCTTGCCCAGCTGATGGGGAggatacagtctctctctctttctctctctcccttccgccCTGTCCCACTCTTCTGTCCCTCCCCCGTCCTCCAttatcgctccctctctctcttccaatcactccctctctcaggaTCGTATCCGGCCTCTCCCACTGCAGTCTCTCTCCACCGGTCTCTGACCTTCAGCAGCCTGGGACCATGCAAGCCTGCCTGCCCAGTGAGAGATGAGGAGGCAGAGTCTCAGAGGAAGGCCAGATCCCGCCAAGCCAGGCAAACCCGCAGATCCACACAGGGTGTGACCCTGGCTGAACTGAAGGAAGCTCAGAGGACCAACAGCCTGTCTCccctggacagagacagacagacagcagatggacatagcagactgactgacaggtccTGTCTGCGGGGGAAATGGGCtgcagaggacagaggagagaccaGGACCAAACTGGCTCAGTCTATGGAGACAGAGGATCACAGTCCCACATGGAGCAGGGAGATAGATGAGCTCGGAAATCATAGATCAAGGCTGGGGACCATGGAGGCAGAATATTCCTCTGCCAGTGGGCACTATACCAGCCTGGCCAACCGCACATCCTCCAGAGTTGTTGAATGGAGAGATGAAAACCAGAACCCAATTGAGGATCCCTCCAAACATGTCCTCTCCACAATAGAGAAACAAGTTCGATTCTGTGACCAAGAGTCAGATGAAGCCTACCAGAAGTTGGAGCATGACAGGGCATCAAGgTTGGACTCTGGTGGTGGGGACAGCAGGGCTGAACCTCTGGGCAGAACCAGCTCCTACACACGCAGGGAAACCAGATTGGCAGCGCTGAACAAGCATGAGGACGACACCAGCTCCAGGGATTACAAGAAGATGTATGAAGACGCTTTGGCAGAGAATGACAAGCTCAAGTCCCGGCTGGATGATAGCAAACAGGAGCTGACCAAGATACGCACCCAGCTGGACAAAGTCACCCAGGAAAAACAGGCTCTGGAGAAGAGGGTAACGGACATGGAGGAAGAGCTCAAGCAGGAAGCTGCCCGAGTGAGAAATTTCCGTTGTGGGTACCAGCCCTGAACGCTGACCATGGGGCAGGCTGGCTCATGGCCAGGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU935009 lncRNA upstream 6942 56652527 ~ 56654815 (+) True G822354
TU935006 lncRNA upstream 9897 56650971 ~ 56651860 (+) True LOC110532435
TU934940 lncRNA upstream 83101 56578443 ~ 56578656 (+) True G822291
TU934923 lncRNA upstream 95930 56565597 ~ 56565827 (+) True G822274
TU934919 lncRNA upstream 98092 56563444 ~ 56563665 (+) True G822270
TU935017 lncRNA downstream 6546 56708563 ~ 56714483 (+) True G822360
TU935019 lncRNA downstream 15113 56717130 ~ 56718162 (+) True G822362
TU935018 lncRNA downstream 19790 56721807 ~ 56729664 (+) True G822361
TU935036 lncRNA downstream 29776 56731793 ~ 56732226 (+) True G822379
TU935038 lncRNA downstream 33287 56735304 ~ 56735899 (+) True G822381
XM_021616328.2 mRNA upstream 9673 56645780 ~ 56652084 (+) False LOC110532435
XM_021616329.2 mRNA upstream 9673 56645782 ~ 56652084 (+) False LOC110532435
XM_021616327.2 mRNA upstream 9673 56645784 ~ 56652084 (+) False LOC110532435
XM_036988405.1 mRNA upstream 9673 56648100 ~ 56652084 (+) False LOC110532435
XM_036988404.1 mRNA upstream 19774 56590692 ~ 56641983 (+) True LOC110532433
XM_021616347.2 mRNA downstream 128727 56830744 ~ 56839626 (+) False LOC110532442
XM_021616348.2 mRNA downstream 130368 56832385 ~ 56839626 (+) False LOC110532442
XM_021616349.2 mRNA downstream 130368 56832385 ~ 56839626 (+) True LOC110532442
XM_036988433.1 mRNA downstream 137700 56839717 ~ 56863877 (+) True LOC110532441
XM_021616354.2 mRNA downstream 212565 56914582 ~ 56946999 (+) False LOC110532445
TU934932 other upstream 88800 56572607 ~ 56572957 (+) True G822283
TU934050 other upstream 528821 56126461 ~ 56132936 (+) True LOC110532427
TU934051 other upstream 537572 56119119 ~ 56124185 (+) True LOC110532426
TU934014 other upstream 598102 56061706 ~ 56063655 (+) True G821409
TU933965 other upstream 686441 55974042 ~ 55975316 (+) True G821363
TU935064 other downstream 60608 56762625 ~ 56763540 (+) True G822404
TU935738 other downstream 640384 57342401 ~ 57915534 (+) False LOC110532462
TU936157 other downstream 1326602 58028619 ~ 58028857 (+) True G823373
TU936266 other downstream 1503246 58205263 ~ 58244984 (+) True G823467
TU936255 other downstream 1545097 58247114 ~ 58250307 (+) True G823459

Expression Profile