RNA id: XM_036988427.1



Basic Information


Item Value
RNA id XM_036988427.1
length 8133
RNA type mRNA
GC content 0.40
exon number 10
gene id LOC110532436
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56708553 ~ 56809173 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTGGTGCACCAATAATTCATGAGGAAAATGCATTAGCCGCTGTGTACACTGCGGCTTCCTCCCTCTGTATTCCTGGCTGGAAGACTGTGCTTCAGCATCACTGCATCcgaccccctcctcctcccatccccctTTGCCCAGCAATTAGACTGCACACTGCAGCAGAGCCACCTAGTCGCTCTGCTAGCCCCGGAAAATATCCCTTTAATCTGGCCTCAGACTCCTCTGACACCCCACTGTACTGCAGAGGTTCATCACAGGCTGCAGACATGCAGAGATGGTCATTGCTTATGTCTCAAAAATCCTCCTAACCCTGGCAAAATGCTGCATCCTATCTCGGTATGCCTGTGTTTGTCCTATGGCATTGATTTCTTCCttagctctccctccctcctaactCTCAATCTCAGTTTTTTTTCTCAtgtcctccctccttccatcctcccTTCCCCTTCCTTTTTTACGCTCTGCGTATGAATTTGCAGAGCTCAGCACTCTTCTACACGGGCGCttcagagaaaaaaaagagaagagCTAGGCGGGAGGGGTCCTGATGCACCATGAAACTGCCTCCTCCCAATTAAAACAGAGAGCTTATGTTATTGAAGAGCATCTTAGCCAATGAGGTGGCAGCGCAGGCAGATacagcagtaaaaaaaaacagaagaacGAGTGGACAAGAAATAAATTGCAGTGAGTGTGTAGTTTTTATCCCTCCCAAGAGCTGATTTTTATCAATTTACTATAGTACTCCAGTCTTAGGGTGATTGTGTGTGGATGTGAGGCAAGAGTTCACAGAAGGACTGAGGAAAGGTGTGTTCTAGGACTATACTGTAGTAGTCCAGGCTTATTCATTCTAACTCTGGAAATAAGAGAAAGTCATTATTGAAGGAATATTTATTCTCTTTTCTTCATTGTCGTTTTTGTTCTGTCTATGTCAAAGTGCCCTGAAGCCGCTAGAGGAGGTTTTCCTGAGGAGGAAGAGACCCAGCACCCAAGCCCCTCTTCGAAGCCCCTTCATCACTAAGCttgggaccctgggactaaacatctccctctgcatctggatcctggtcttcctgacggtacacccccaggtgGACTGTGTGTGGCCTAGCCATCTAGGATGAAGTGGAACCTGTTCAAGAAGAAGCCTGAAGCCATGGTCGGACCGGAGCCCACTGGGGCCGCTGTCTTAACTGTTGCCCCTGGCCCCGTGGCCTCCACCGCAGCTGACAACTCCACAGAGGCCGTCAAAAACGGCGATTTTGACGACATCAAGAATAAGTTCCTCAATGAGATTGACAAGATCCCATtGCCATCATGGGCCATCATCGCCATTGCAGTGGTAGCTGCTACCCTGATTCTCACCTGCTGCTTCTGCATCGTTAAGAAGTGCTGttgcaagaagaagaagaacaagaaggGCAAGAAAGGGAAGGGGGAAATGGGCATGACGAACATGAAAGGAGGAGAGGacgatgatgattatgatgaagATGATGCTGAGACTGGTATGACTGGAGacgagaaagaggaagaggtgaaggagAAAGAAAAGCTCGGGAAGCTTCAGTACTCCATAGATTACGACTTCCAGGACAACAAGCTCACAGTAGGCCTCCTCCAAGCAGCTGATCTCCTCTCCATGGACAGCGGCGGCACCTCTGACCCCTATGTCAAGGTCTATGTCCTCCCAGACAAGAAGAAGCATTTTACCACCAAGGTGCACAAGAAGACGCTGAACCCTACCTTCAATGAGACCTTTGTTTTCAAGATTCCATTCCAAGAGATGGGTGGCAAGACTTTGGTCATGCAGGTCTTTGACTTTGACCGCTTCTCTAAGCATGACGTCATTGGAGAGGTGAAACTACCCTTGCACAAACTGGACCTGGCCCAGCcactggaggagtggagggaccTGGACAGTGCAGAGAAAGAAGAGCAAGAGAAGCTGGGAGATATCTGCATCTCTCTGCGCTATGTGCCCACTGCTGGGAAACTTACCATCTGTATCCTGGAGGCCAAGAACCTCAAGAAGATGGACGTGGGAGGACTATCAGATCCCTATGTGAAGATCAACTTGATGCAGAACGGCAAGcgtctgaagaagaagaagaccacgGTGAAGAAGAACACTCTGAATCCATACTACAACGAGTCCTTCAGCTTTGAGATTCCTATTGAGCAGATGCAGAAAATCCAAGCTGTGGTCACAGTGCTGGATTATGACAAGATCGGTAAAAACGACGCAATCGGGAAGATCTGGGTGGGCAGCAAGGCGACTGGCACCCAGCTGAAGCACTGGTCCGACATGCTGGCCAACCCTCGCCGCCCCATCGCCCAGTGGCATCCACTGCAGCCCGAGGAGGAGATTGATGCTTCGCTGGCAGCCCTGAACGCCAAGAAGTAAACCTCCTCTACCCACTAACACCCATACCCAAACCTACCCATCCTCCTCACCCCTGGTCCTACACATCTCCCAATAATACATTCCAAACCAACACACCAACCAATTCTACACCCTATACCACAAAAGATACCTGCCTATATCCCAATTGACATGatcaaaaaataataaaaaataaaacattcattCCACAAGGAGACAGTCACAAGATCACTCAATTGATGTTTGTATTGGGGTTGCAGTTAGTTACATTGTGTCATGAGGATAGGAGCCTAGAGTGTGAAAACAGCGGTCCAATGTGATGGAGGATTAGGGAAGTAAAACCACACATTCACTCATTTTGTACCTTTTCATCTCCTCCCCTTAGAGACACCGTTGCTTCAATTCTGCGTAATACTTAAAATGCTTTATACTGCCATGTAATAGAGGAAAAACACAAGCAGGTTCATTCCTTGGGTGTACTGTTGCACCATGCTCCACACCTGCCAGTTAATTACTTACTACATACTAGATACGATTAGTTTGAACTACATTCCTAGAGTTGGGTAAAGAGTAGAGATAGACAATATCCAGTTACCCCACACTGTTAACACACTGCCTTTTTGATCATTAGCTCATCTGCTCACCCATATTCTCAGGTACACTGAGAGAAAACTGAAACTTCATGCCTTTTTTTCTAAACGGGTTGTTATTCAAAATGCTCCGCAACATGATCAGAGAATAATGTTTTTGATGATTTTAACATCTCAGTCTGGTGCTGGATTGGTTTATTTTTCCATAATCTAAGACTAGTCTAAATTTATCACTGAAATGGCAACAGGAGAGTCTCTCGAGTGTCTCTCAATAACACCGTTTGTGGCTGTCAGTCAACAGAGTAGAGATGTGAAATATGTTTAGGATAAAGGGACTATGAGCCACTGTAAGTGTCTACCATGTCCTATGCTGGGAAAGCATGCAAGAgaaataatatatgtgtggaaACTCCAAGGACTGAATGGAAGGTCACATTCAGTCCTTGGAGTTTCCACACAGATATTTCTCCACACAAATATTTCTCTCTTGCATGCTTTCCCAACATGGGCCATGATAGACACTTACATGCATGCAAGAGAGAGcatatctgtgagaatatctgtGTGGAAACTCCAAGGACTGAATTAGACCCTGGTTGACACAATGTTGTTTGTCAGGTGTCTATTCTACTGCCTGCAATCTACCACCTTCCCCTCCAATGCCTCTACTATTTAGGATCTATCTCCCTGTTCAGTGCTACTGCCATTAGTCATGGACTCACAACAAGGATGTCACTTATTCAAAGGAATCCCTGTATCCGTCTTACAGTCATAAAGGAGACAAGCCTTCCAAGTAATGAAATAAGCAATTCTCAACTACCAGGGACGCCTTCCAATTAGCTGTGTTGTTTTTTACTCACTCTTTTCTTTTCAACGTCAAACACTTTTATTCCTCAAGCACTTTAAATCAAAATGTTCTGTTCTAATTCTACTCTCCAAAAACCAGAGATTTACCATTTATTTTATGATGAATCATTTCTGGTAAAAAAACAAGAGAGTGAATTTATGAGTGAATCATTATTTTTGTAGTTTTTATTTGATCATTTTAACCTTGTTTTTCTTGTGAATGCACTTTGATTGCTCTGAGACAATTGTTGTTGTTAAGTTTGATTGAAAGGATAAGATCTGGAAGGTTCCCGTTATGTGTATGTTATACACAGATGGCCAAACTGCTGAATCTAATTGCACTATACTGGATATCTCTATGTTACGTGGTTATAGATTGTTCTTTGATCTATGGAGTATTTGTGATGAGATGTCGTGAGTTTGAGTCAGGTCACATATTCAAAAGTCTTCTGATTGGGAATAAGACACATTTCAATTAAATGCTGTTCCTCAGATCCTTTGCTGAATAAGTGATTTTACATTTTGACTTTCTCTTGAGATAAATTTGAGCATAAAACTGATCATATGACTGAATTAAattgacatttaaaaaatgtcaaaGTCGTAGCAAAATGCCATTAGACTTTCGAGCCACACTAGTAATGTAATGGGACATGAACTGTCTCTGTGCACCATCTTGTTCCAAACAACAAAATAGTTCAAAGCAACGTATTTCAAGGACGGCAAAAAGTACTCGATTGTGTTTAAGAACAAGCAAAGCAGTTTAATGTTTTAACAGTTTGACAACTTTTATACTTTTGGGAATTACAGTAGTGAATGTTGGTTAATGTATTGCTTTTCTCTATAGGACATCCATATCTTTATGTATATGTCCAGTAGGGGTCAGATTAGTTATGTTTTATGTTTCATTTGATTTAGTTTCTTCTATATGTTCAAAAAACAACACTAAAGAAAAGACTAAATGCAAGCAATCAAACGACCCATCGGTGAGTAGTTTTGCCTATATACATAGTTCATACAGGTTGATACTGCATGTTTCTACAAAATACTGTACAGAATAGCATGTTTTAGAGATAAAGCAAAAATAATTTGTGTACGTGGGTGTCATTTGTCATTTTAATACTGTAACACAATGCAGGAAAAAAGATACACTGTATATTTTCTAAATGAaacaaatatgtatttattttccatgaATGGGTTATTGGAGAgaatgtcataatatattagaataATATGATTCTGTCCATGCCTAAACTTTTAAGCAAGTTTGTCGTCAAGTACTGTGTGTGAGTTCATGTAGGATAACAATGTAGCCGCATGCTTGCTATCGAAATCCTTGTGATTTCATTTGGATTAATTATCatttatttcaaatgtatttatttacgtATTGTTTCCTTTGAGATGATTTAAGTCTATGTTGGTCTTCTTGCCAAACATCAGTGATTGTAGAGGGCCTCCAAGTTCAAGAAATACAACTATTCCAAAGTGGAACTCTTCAATGATCAGTGCCATTGCTGAAACATATCCACCATTTGGTTAAAAAGACTGTAAAAAAAGATGAACCTGATTTTTGGACAAACATGTATTACAAGCCTACTATTTAGGATGCTAATGAGCCACCAGAACTGAATCCACAGATCTCCACACTGGACATAAAGCTTGGAGTCCCCTACTGTACATTAAACCTTTTGGGGGGAATTTTACTTTGCGTTGGTTTAATGACCTGACACCCTTtgcaattatatatattttacagtgcTAATTACACAAATATATGTGAATGTGTATACAGATAGTTGAATTAGATAAAAACTAAAGCCATAATACTCAAGCACTAGCTCTTTAGAGCTCTGCTGTATAACTAGTTATTGatttgtaaaaaacaaaaacaaaaaaacacttctTAATCTTCCTAGGTCAGTGTTTGTCATGTACATTCTGTTCAGAACTCTGTACTCATCTAGATTCTAGGAGGCAAAATATTGAGCACTGAGAGCAGTTGTGAGTTTAGTATAGGGGATGTGATTTTGTTTTCTACTTTGAAGATGTTAAAGCTGTCTTTATTTTATACATGTGTAGCTAATGTATTCCAGTGATGTAATTTGTATATGCCTTGTTTTGATAGTATGAATCATGGTTCTTCTTATCTCACAAGATGTTATCGAAAATACCTGAAGAAGTCATCCGGAACATTTACATTATTGAAATGTGAGTGTCAGGCTCGTCTGTTGGTGATCCTTGGGCTGAGTGCAATTCATTTGGGACCCTGACTGCGATGTACGGATCCCTCTATTTTCATCCACAGTGGCTTTACAGACATGACATCATATTGTGATCAAAGATACGGCAGACATATCTATCTATCTTGTAACAGTGCCAAGTCTCAGCATTATTGTCTGATCAACATATGTTGTGTTCATGGTAAACAGTAAAGTTAAGATAAATCATCGACAGTCTAATCTTAGACACTTTGATGGAAACCAGCTGTTTCAAGTCAACAATTCCTCTAATAGCAACACTATTGAAATAATAATCATAGTGTTGTTTGATGTTTGCAACTATTTTATAATGGGATCATTGATGTTGCTTCTCAATGTCACAATCAATCCTTTTGAACTGTGACCAAACCGATGCACATATGGAACTTCAATCCAATTGACGATTTCAGTGTCTTTCCAAAATACTGCCAGTATATCCATCTATATTTACAATTCCATGAAATCATCATCAGTAATCTGTTTGAATCTATTTCAGAGCCCAAATAATTCCACTGATGCGGATGCAGTTTAGATGATAAAATAACTGTGATTAAAGGTTCAAATATAGCACATTTTTATTAAAAAGAGTTGATTGTTTCAATGCTTTTTACACTGCCACGGTCATTGGACAGTTCTCTATATGGGGAATACGACTGacaactgtgtgtttgtgtgtatgtatgtatgtatgttacaAGAACAAAAAGCATAGGCCCTTTATAAAGTTAGAGGTTGCAGTGCTAAAACACAGTACTACTGCAACTTACCAGGCGTATATATCTGCATGCCCAGAATACATAAACCATTCTTAAGTGTACATTTAAGTGGTGATAAAAATAATtaacaaatatgtttttttatttacaatggtttaaaatgtttatattATAGGATTACCTATTTTTTGAAAGCCTAAATTGATATATCTACTTTATGCAAAGTAGTACTGCTTTAGAAACTAACTGCAGGCTATATCTCAGCGGTGAAGGAACAATGGATTGAGAGCACGATGATTCACACACTACATTCTACTGTTCTTTTGTACTACTAGCTGTTTTATTTCTATCAAGCTTTTTAAATGAATTATTCAAGTACTTTATGAAAAAGGTCCATGTGATTTTCAAAGGGATACCCTCCAAACTAGAGCATCATATCAAAGCAAATtggatttgtcacatgcttcgtcaACAAAAGGTGTGGACTTACAGGGGAATGTTTTCTTACagacccttcccaacaatgcagaaagagagagaaagtagagaaatAACAGAAAAGTCATACAACTTCCATGTCAATACTGTGTTAAGGAGTGTTTCAGTTGGCCTAGGTCACTCACCACCTTACAGTGTGTTctcctgtctctgtttgtgttTCCTCTTTCTACTGTAATAATCACTAGGTTAGTGTtgtgtttctattgtattatatttagAATGCAAAACTGCATTAGGACCAACGGAAAAGACAATGATTGAACTTTTCCACCATGAATTCACTGTTTTTCTGTCTTAGCATTTTAATGTGCTGTTGTTGTGGAACTGGACTCGCTGGGGGCTCCTTTGGATCCAGAATGATACTGATTTTCAGAGGAATGTCGTCCTTCGCGTTTacaacatggatatatatactaCCAAAACATGCAGAATAGTACCAACCCTCTCTCTTGAACTCTTCCTTCACTTCTAATTTTCCATACTACATTGCATTCGAAAATActtttttctcctctctttctcttcatcctCTTTTTAAGCCTCAGAGGACCATGAGATTACGTGTCCTCTGGCTGTGTTTCTTCGTGTCTTAGTGTTGTGGTGCGTGTGTTCATGTCAGTACTTGTGCCTACTGTGGATCGCATGCTTTAGCCCTTGACTGGACACAAAACGTTGCTCCTATACAAACTGCCCACGGCCCGTCAGTGGATGAGCATCGAGGATCCTTGTAAAGTTATCGAGGGAACCAAATAACTCAATACAGATCTATCATAAGTGTTACCAGCTCTGTAAGAAACAAATAGGAAATAAAGGCCTTTTAATAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU935317 lncRNA downstream 53544 56652184 ~ 56655009 (-) False G822609
TU935318 lncRNA downstream 53544 56652184 ~ 56655009 (-) True G822609
TU934946 lncRNA downstream 127177 56581080 ~ 56581376 (-) True G822297
TU934922 lncRNA downstream 143387 56564958 ~ 56565166 (-) True G822273
TU934836 lncRNA downstream 198961 56509366 ~ 56509592 (-) True G822190
TU935414 lncRNA upstream 52743 56861916 ~ 56862238 (-) True G822698
TU935421 lncRNA upstream 60582 56869755 ~ 56870953 (-) True G822705
TU935422 lncRNA upstream 63237 56872410 ~ 56872692 (-) True G822706
TU935437 lncRNA upstream 83023 56892196 ~ 56892501 (-) True G822721
TU935488 lncRNA upstream 162855 56972028 ~ 57024524 (-) True G822771
XR_002474832.2 mRNA downstream 67517 56640223 ~ 56641036 (-) True LOC110532434
XM_036988392.1 mRNA downstream 565148 56133124 ~ 56143405 (-) False LOC110532429
XM_036988393.1 mRNA downstream 565351 56133124 ~ 56143202 (-) False LOC110532429
XM_036988389.1 mRNA downstream 589789 56112212 ~ 56118764 (-) True LOC110532425
XM_036988391.1 mRNA downstream 589793 56112212 ~ 56118760 (-) False LOC110532425
XM_021616336.2 mRNA upstream 818 56809991 ~ 56812094 (-) False LOC110532438
XM_036988430.1 mRNA upstream 818 56809991 ~ 56812094 (-) False LOC110532438
XM_036988431.1 mRNA upstream 818 56809991 ~ 56812095 (-) False LOC110532438
XM_036988429.1 mRNA upstream 818 56809991 ~ 56812100 (-) True LOC110532438
XM_036986956.1 mRNA upstream 5272 56814445 ~ 56815434 (-) True LOC110531213
TU934518 other downstream 565125 56133154 ~ 56143428 (-) True LOC110532429
TU934516 other downstream 565182 56133004 ~ 56143371 (-) False LOC110532429
TU934517 other downstream 565182 56133154 ~ 56143371 (-) False LOC110532429
TU934476 other downstream 722036 55985960 ~ 55986517 (-) True G821851
TU933570 other downstream 1284994 55422543 ~ 55423559 (-) True G821013
TU937368 other upstream 1631297 58440470 ~ 58440858 (-) True G824405
TU938076 other upstream 1855609 58664782 ~ 58668085 (-) False LOC110531218
TU938079 other upstream 1855609 58664782 ~ 58668085 (-) False LOC110531218
TU938424 other upstream 2413370 59222543 ~ 59223481 (-) True LOC118966080
TU939209 other upstream 2829173 59638346 ~ 59638894 (-) True G825961

Expression Profile


XM_036988427.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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XM_036988427.1 Expression in each Bioproject

Bar chart with 6 bars.
XM_036988427.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.