RNA id: XM_021616347.2


Basic Information

Item Value
RNA id XM_021616347.2
length 2661
RNA type mRNA
GC content 0.37
exon number 7
gene id LOC110532442
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56830744 ~ 56839626 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttGTTTAGGAAGCATGTGACAATGGAAATGTTTTTGATTATAAAGGACATTTATAATGTTCATTCACACATTCAATTCATCAATCTATTTTATATTGGCAGATGCAATTGTCACTGAAAATATCACTGTCATGCTTAGATGTTTTAGTCTGAGTACCAGTTTGTTTAGTTTATTCTACTCTTTGCTACTCCTGTCATGATAAACTTTTGCATaatttataccctgatgaagacagcttggctgtcaacgttggtattacatttttgcatctgagctcctagagtgtgcggctctcttttattttttattttcaaacTTCAGCATAATGACATGGCGTTCAAGGTGTGGAATGTTAGATTAACAGACTGGTACCCATGCTGGCCATAGATGTTTAAGGTCATGATACTGATTGAATATTATGATAATTCTGGATGATTTAGACATATTTACTTTATTGATGTTTGTGTAATGGACTGTGAAAAGTAGAGAACAAATGTATTATAATCTACAGCATCGCGCCTGCCGCTTTTGGCAAGAACGTTTGGTCTGCAGACAGCAATACGTCATTTTACTGTTGTGGCGGCAGAACAGTGAAGCGACGAATGAGTCAGCAGAGTAGGCACTTCCTATACAATCAAAGGGGGAAACGAGATcttttaaaaaaacaatcaaatcGATAATTTTTTACAAGCAAGGAAATGGCAGTTCCTGCTGTCCCGAATCTGCAATTGAACAAAACAGTAAGTCAAAACTCCCCCGAACGTAACATCCATATCGACGAAAGAGAATTGGAGAACATCACGAACAACGATGGAAACGGAACTCTCCCATTACATTCTCCGTGGACTTTTTGGCTTGATAGATCTTTACCAGGAACAACGGCAGCAGAATGTGAATCAGGTCTGAAAAAAATCTACACTGTGCAAACAGTTCAGAGCTTTTGGAGTGTGTACAACAATATACCTGGAGTATCCAGCCTACCACTGAGATGTAGCTATCAcctaatgagaggagagagaagaccaCTCTGGGAAGAAGAGAGTAATGCAAAGGGGGGAGTTTGGAAAATGAAAGTACCCAAAGAAAGCACTCCTGCTGTATGGAAGGAGTTACTGCTGGCCACTATTGGGGAGCAATTTACTGATTACTGTGCTTCAGAGGATGAGGTGGTTGGTGTTAGTGTCAGCGTTCGAGACAGAGAAGATGTTGTTCAAGTCTGGAATGGAAATGCCTTTTTTGCTAACGACGCAAACATCCTAGGAAGGATCTATGAACTTCTTCCACAGATAACTTTTAAAGCAGTATTTTATAAGCCACATGAGGAGCACCATGCCTTCGAAGGAGGTCGCCCAAGACATTAGCAAGCTTTGCACATTTGACACTTTGTTGTTTTTGGTCATGGAAATTGACTGAATCTTCTGAGCTCTACTGTCTTTCATGAATGTGTTATACAATTACTTCAATTTGGGCAGACAGAAAATGTCATAGCTAGGCTTCATTTTAGGATGACTGATACATGTTCCTTAGTGTTTAGTTTTTTTATACAAAAATATTTAGCTAAACCACACTTTATCTCACCAGTGCACTTTTACCAGAGCCTTTTAGTTTTCACAGTTTCCTGATCTTACATTGAATTTACATTGTTCCCTGATTCTAGAATGAATGGAGAGTATTTTCCTCAAGCCAGTATTATTCATACAGTTTTATGTGAAAATGTTGCacattcaaatgttttatttatttgttttttggggtttgtagtttatttttggcgggggggggggagatcttaACTGTTACTGGTTGTTAGATTTGTTAAATAACACCAACTTTTTTACAAAAACTAAATCAACACTGCGTGTTACCAGATAAATGCTATAGTTTAGTTTACCCTGAGTGTTTTGGTAATCAGCAGTGGGTCATTGTACAAACACACTCAATTGTTGTTTCCGAAATGCACAACAGGCCTTTTTAATTTTTACTGTAATGAACACGATTACTAAGCAAGGAATCTAGACTACGCCTAGATGGGTATCAGTTTTCTGAAGAAGATCAATTGCACATGTCAATTGGTTCATTCAAATTTTTTTCTTCACTTTTGTGTTTATTACATTTCTATCATGAATATTGTTCTCATTTAAGTCCTACAAACTAAAAGAACCATTTTGAAATTCAAAAAACGATATGATGTATGAACTGTGCTTTGGGTTGAATGAGTACTTATCTTTACCAAAGACctttctaaccctctctctctctgtcgtgtgTGTGCAcaagcatgcatgtgtgtgtatgcacccTGCCAAGCTTTTTAAGTTTTGTAACCTGTTGGTTGTAATTGTCATCAGATGCTTTGGAGCTTCTCTGTGACTCAGGTCATCCATGTTCAAACACTAAGCACATTAATTAGGGACGTTTTTGTTGAAAGAACAAATAATTGAACATAATGTAGCTGGACTTTCTGGCAGTTTTTACTATAGTGCCCAGTCAAGGTGAGATCTCAACTGATTATTAATCTTTGGAATGGTGCCTTGTGTTTTCCAAGGGTTTCAGTCTTGAAAGTTGTTTATTTTTAACATTGAACCAGTCAAAATGTAAAATCAATATTTTTGCTGATATAGATTTGGAAATGTTGGAAAAATGAAATGCTAAACAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU935099 lncRNA upstream 22200 56806388 ~ 56808544 (+) True G822438
TU935096 lncRNA upstream 25420 56805114 ~ 56805324 (+) True G822436
TU935095 lncRNA upstream 25839 56804680 ~ 56804905 (+) True G822435
TU935094 lncRNA upstream 26477 56804054 ~ 56804267 (+) True G822434
TU935083 lncRNA upstream 40813 56789698 ~ 56789931 (+) True G822423
TU935167 lncRNA downstream 30453 56870079 ~ 56871432 (+) True G822470
TU935168 lncRNA downstream 32759 56872385 ~ 56872717 (+) True G822471
TU935170 lncRNA downstream 37701 56877327 ~ 56877791 (+) True G822473
TU935171 lncRNA downstream 38757 56878383 ~ 56878743 (+) True G822474
TU935181 lncRNA downstream 51374 56891000 ~ 56891203 (+) True G822481
XM_036988406.1 mRNA upstream 122417 56661757 ~ 56708327 (+) False LOC110532437
XM_036988408.1 mRNA upstream 122417 56661757 ~ 56708327 (+) False LOC110532437
XM_036988409.1 mRNA upstream 122417 56661757 ~ 56708327 (+) False LOC110532437
XM_036988412.1 mRNA upstream 122417 56661757 ~ 56708327 (+) False LOC110532437
XM_021616331.2 mRNA upstream 122417 56661841 ~ 56708327 (+) False LOC110532437
XM_036988433.1 mRNA downstream 91 56839717 ~ 56863877 (+) True LOC110532441
XM_021616354.2 mRNA downstream 74956 56914582 ~ 56946999 (+) False LOC110532445
XM_021616352.2 mRNA downstream 74968 56914594 ~ 56946999 (+) False LOC110532445
XM_021616353.2 mRNA downstream 74970 56914596 ~ 56946999 (+) False LOC110532445
XM_036988436.1 mRNA downstream 75439 56915065 ~ 56946999 (+) True LOC110532445
TU935064 other upstream 67204 56762625 ~ 56763540 (+) True G822404
TU934932 other upstream 257787 56572607 ~ 56572957 (+) True G822283
TU934050 other upstream 697808 56126461 ~ 56132936 (+) True LOC110532427
TU934051 other upstream 706559 56119119 ~ 56124185 (+) True LOC110532426
TU934014 other upstream 767089 56061706 ~ 56063655 (+) True G821409
TU935738 other downstream 502775 57342401 ~ 57915534 (+) False LOC110532462
TU936157 other downstream 1188993 58028619 ~ 58028857 (+) True G823373
TU936266 other downstream 1365637 58205263 ~ 58244984 (+) True G823467
TU936255 other downstream 1407488 58247114 ~ 58250307 (+) True G823459
TU936293 other downstream 1549045 58388671 ~ 58390570 (+) True LOC110532478

Expression Profile