RNA id: XM_021616353.2


Basic Information

Item Value
RNA id XM_021616353.2
length 3927
RNA type mRNA
GC content 0.48
exon number 22
gene id LOC110532445
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 56914582 ~ 56946999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATGGTATTCCGCATGGGTCTGCATCATGTCTAATTCTAAAACATTAACCTTTATTACCAGCAATGAGCATATTGTGGCCCATtgtgtacagttcagtacagccGCCGTAGCTGAGGACAGCGAGCGCTAAAATCTCCTTTCACGTAAATAACTGCGGGGTGAAGGCGTGGTGAGCGTGGAAGAAAGCAAGCGTGCGCGAGTAGCCCTACGAGAGAAGGCTACTAATAGTTGACAGCGATACAGTTCACTGACTCTCTCCTCCTTTTGCTGAAAACGTAACAGGGATGCATTGAATGCGTTTCCAATATGCTGGAGGAGACCTATGTTAGATTCAAGAAACCAACTAGCTGAAATAGAAGGAAACGCCCAAAACGAAGATGACGGAGGGGAGACTCTGCCAGGTTCATCTCCTTGACGGCAGGAAACTTGATCTGCTGGTTCAGCCCAAGCTGTTGTCCCGTGAACTGCTAGATCTGGTGTCCTCCCATTTTAACCTCAAAGAGAAGGAATACTTCGGCCTAACATTTGTTGATGACAGTGGCCAGTGTAAATACTTGCAGTTGGACCGAAGAGTTCTAGAACATGACTTTTCTAAGAGGGCTACTGGGCCTATTGCCCTCAACTTCCTGGTCAGGTTTTACATCGAGAGTATAACACTGCTGAAAGACAACACAACGGTGGAATTATTCTTCCTAAATGCAAAAGTTGCCGTCTACAATGGGGATATAGAGGTGGAAAGTGAGAATGTATTCAAATTAGCAGCAAACGCCTTGCAGGAAGCAAAGGGGAATTACTCAAGTGATGAAACCACCAGAATGGATCTGAAGAAGCTCCCAACTCTTCCCAACAAGGTGCTAAAGGAGCACCCATCACTTACATACTGTGAGGATCGAGTGATAGAGCACTACAAACAGCTGAAAGGAGTCTCCCGCGGACATGCCATAGTGCAgTATTTGACTCTAGTGGAATCCTTACCCACGTATGGTGTTCATTATTATGAAGTAAAGGACAAGCAAGGTATCCCATGGTGGCTTGGGATCAGCTACAAAGGAATTGGCCAATATGATTTGCAGGACAAATTGAAACCAAGGAAGCTGTATCAGTGGAAGCAACTGGAGAACTTGTATTTTCGGGAGAAGAAATTTGCTGTTGAGGTGAATGACCCTCACAGGCGGGCAGTGACCAAGCGTACATTCGGCCAGACCGGCTTGGTCATCCACACATGGTACGCCAGCCATTCACTGATCAAAACCATCTGGGTCATGGCCATCAGTCAGCACCAGTTTTACTTGGACAGGAAGCAAAGCAAGGGTAAAATAACTGCAGCGAAAAGTTTGGGTGATATTGCCGTCGATCTAACAGAGCATGGAGGAGGAACCAAGATAACCAGACTAGGAGATAACCTAAAGCACAACCTCATTATGGCTAGCACTGGTAGCCTGGCGTCAACAGGGTCTGCCGATTCAGCGGTGGACGAAGAGCAGAGAAAGGAGAAGATCTCTGAGCTAAAGAAGAAGGAACAAGAGATCCAAGACGTCTTGACCCAGAAAACAAAGGAGCTGAAGAAAATCTGCTTGCTGGAGGCGGAGCTCACGGGCAAACTGCCAAAAGAGTATCCCTTGTTTGCAGGCGAGAGACCTCCTCATGTCAGACGACGCGTTGGAACGACCTTCAAACTGGATGACCTCTTCCCATACAACGAGGACCCTTATCTGAGGAACCTGGAGAGCATGTTTGCTCTGCAGCAGAAGATCGTAGAAGCAGCTAAGAAGCTGGCCTCAGAGGCAGAGCTCTGTAAGActgtgaagaggaagaggaggaggaactgtCAGGACGCCATGAGGAAACTGCAGCAGGTTGAAGACGAGATGAACCAGTACAGAATCAAGAAAGGCAAGAAGCCTACCCAAAGAGCCTCTATGATTATCACAGATGAATTTATCCGTTTAGAGACCAGCTCCCTGTCAGATAGTCAGATTCTGGATGACGATGACTCTGATGGTGCTCAGAGGCCCCGGTCACGGTCTGTCCAGTGCTCCCCTCAGCTCAGCCCCACGCACTCCCTAGATCACCACAACAACAAGAGTCTCAACAGGTTAGCGTTTGACGGCCAGGATGCTTCACACCACTACCACCCCAGAGAGGTGTCATCCGCACACAGCAGCCCCTACAAAACCTTACCCAGACCTTCACGGGACGCACGCAGCATGCCCTCCACTCCCGTTATGACCCGCAACGCCTACAGCAGCAGCCAGCTCAGGTCGGATGGGAACTCTCAGTCCTTCAGGCACCGCAGTGGGAGTCTGGAGTCACAGCAACGGCTATTAAAGGATACTGACTCAGAGAAGCCAGTGTTTACCCAGTCCCCTGCCCGCAGGAACAACAGCACAGAAGCCCTGGAGGACTGCTCCTCCTACACCAGCCAGTCCAGCTTGGACTACGCAGGCAACCCCCACTACTGCACCCTGGACTCTCGGACCCGCAACCATCAGCTGCACAGGAGGGTGGAGGTCTACGGTAATACAGGCAGTATGCCCAATTTGGTCCAGAACCATATCGGCTTTAGTGATACTTACGAGCCCCAGGCACACTACGCGCCAACTGCTTACTACGTGGCAGGCTACCCCTGTCCAGACATGGAGCCCTACTCCAACGGTGCTTACGTCTATGAGAACGAGATGGAGGGCCACTACAATGTCAACCCCTCCTACCAAGTCCACAATTACGGACACGAGCGATACAGGACCTACAGTAGTGATCGGGCGGACAGCCTTGCTCAGAACCCCTACGCTACCATGAGATTGCCCCGGACCAGACATGGGCCCCGCAATGAGCCCTTACAGAAGAACATGCAGAAGGCCATGGTGGCTGAGCACCTGAGAGGCTGGTACCACCGCAGCGGGGGCCACATAGAGGCAGGTAGAGGTCTGGCTGGGTATGACTACGATAACGGCTCTCAGCTCAGCCTTGGATACCAGACCATGCCAGCCCCCTTCAGCCACTCCAGCCGAACCACCTCCTACTCCTCAGTTTCCTCATCCACCAGCACAAGAAATTGGCGCAGCCAGCTAACTGTGGGTCTAAcagacaatgataacatggcaGAGTCACCACAGCACCATCACCCAGGAGCCCATGGCACCTACAACCGGAGCCCCACCCATATCAGgaGAATATTCATGGATGGAAATTACATGAGCATCTACTGAAGGTAAGAGGACTGGAATGAAATCTGTCACAATGACCCTGACACTGGAAGCACAGACCTCTGGATGGATGCCAACTAACCAATCTGTATACATACTATGAAGCTTGAGAATGACTCTCCCATGTGCCTTGGATTGGATGGAGATCAATATTATTCAGGAAGACATGGATGTGGTGATGGCACAAAAGTTTTGCTGATCTGGAAAAGAAGCTTCATCATTGTGAATTTCGAACCCTGGGATATCTTTGACCCAAATATATTGAACCAATTGTATTATGACATTATACATATTGTAAATCAACTTTAATATCTTTGTAAAACATTTTAGGTATACATTTTGGAGTTATTATTCACAAAATGTGATAACAAAATAATATACTAACCCTTCTTTAGTCCCAGGTTGTCAGTCCATGGActgacactctctcctctcccaagtATGAATCTGAATGTACATGtttatagattattattatttgtgaaTGTGTTATTGTGATGTAAATTGCTTTCATGTGGAGAACATAAACTTTTGATAAGTAGGTTTTTTGTATGATGTAAAAAAATATGTCTTTGAACTGGATAACCCTCAAATAATGTTCCTTTATTTGTTTCTCTACATATTTCTACATTGTCCATGTATTGTTTGTCTTCTCCTACTCTGAGTGAATATCTCCCATTTGGATTTGGGACATTAATAAAAAACAGTGTGAGACTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU935183 lncRNA upstream 7388 56892691 ~ 56907208 (+) True G822483
TU935182 lncRNA upstream 22617 56891714 ~ 56891979 (+) True G822482
TU935181 lncRNA upstream 23393 56891000 ~ 56891203 (+) True G822481
TU935171 lncRNA upstream 35853 56878383 ~ 56878743 (+) True G822474
TU935170 lncRNA upstream 36805 56877327 ~ 56877791 (+) True G822473
TU935605 lncRNA downstream 147439 57094438 ~ 57094913 (+) True G822870
TU935623 lncRNA downstream 203273 57150272 ~ 57150495 (+) True G822888
TU935624 lncRNA downstream 204956 57151955 ~ 57152271 (+) True G822889
TU935627 lncRNA downstream 207894 57154893 ~ 57155201 (+) True G822892
TU935634 lncRNA downstream 217922 57164921 ~ 57165144 (+) True G822899
XM_036988433.1 mRNA upstream 50719 56839717 ~ 56863877 (+) True LOC110532441
XM_021616347.2 mRNA upstream 74970 56830744 ~ 56839626 (+) False LOC110532442
XM_021616348.2 mRNA upstream 74970 56832385 ~ 56839626 (+) False LOC110532442
XM_021616349.2 mRNA upstream 74970 56832385 ~ 56839626 (+) True LOC110532442
XM_036988415.1 mRNA upstream 206269 56661866 ~ 56708327 (+) True LOC110532437
XM_021616357.2 mRNA downstream 479 56947478 ~ 56948805 (+) True LOC110532447
XM_021614442.2 mRNA downstream 1805 56948804 ~ 56950054 (+) True LOC110531214
LOC110531215 mRNA downstream 12049 56959048 ~ 56979903 (+) True LOC110531215
XM_021616365.2 mRNA downstream 173187 57120186 ~ 57136909 (+) False nfascb
XM_036988443.1 mRNA downstream 173187 57120186 ~ 57136910 (+) True nfascb
TU935064 other upstream 151056 56762625 ~ 56763540 (+) True G822404
TU934932 other upstream 341639 56572607 ~ 56572957 (+) True G822283
TU934050 other upstream 781660 56126461 ~ 56132936 (+) True LOC110532427
TU934051 other upstream 790411 56119119 ~ 56124185 (+) True LOC110532426
TU934014 other upstream 850941 56061706 ~ 56063655 (+) True G821409
TU935738 other downstream 395402 57342401 ~ 57915534 (+) False LOC110532462
TU936157 other downstream 1081620 58028619 ~ 58028857 (+) True G823373
TU936266 other downstream 1258264 58205263 ~ 58244984 (+) True G823467
TU936255 other downstream 1300115 58247114 ~ 58250307 (+) True G823459
TU936293 other downstream 1441672 58388671 ~ 58390570 (+) True LOC110532478

Expression Profile