RNA id: XM_021616412.2


Basic Information

Item Value
RNA id XM_021616412.2
length 2670
RNA type mRNA
GC content 0.47
exon number 6
gene id apex2
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 58286445 ~ 58290128 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTTCTCTcgttgacttctcaaaccccggCCTAGTCGGCTTGGTTTGTTTTTGCAAGCTTTCCCGGAAGTGTAGCGATTTtgtgcctctgggtttagaaactctgtcgAAAATGTTCTTATTCGATTGACGTACTTCCGGGTCACTTCCGTGTTATCCAGTCGTCACGTTTCAAGTACAATTTTTGTAAAGCAAATTGTAAAAAATATGTGAAAAGTTGGTCACGAGTGTCGTAAAACCATGAAGATTGTCAGTTGGAACATTAATGGCATAAGAACTTTCAAGGGTGGAATTAAAAATGCGCTTGAGTCGCTGGATGCTGACATCGTATGTGTCCAAGAGACAAAAGTAACAAGAGACCTGCTGGATGAGAGGACTGCTATTGTTGAAGGTTATAACTCATATTTCAGCTTTAGTCGTGGACGCAGTGGCTACTCAGGAGTTGCTACTTACTGCAAAGACAGTGCCACCCCATTTGCTGCAGAAGAGGGCTTGACCGGTCTGCTGACCACCAACCCAAAGGGGACCATTGGATGCTATGGTGACTCGAGTGAGTTCTCCAGTGAGGAGCTGCAGCTCCTGGACAACGAGGGAAGGGCTGTTCTCACACAGCACAGAGTCATGTGTGAAGACACACCTGAAACAGTTACGGTTATCAATGTATACTGCCCACGAGCTGACCCAGAAAAGCCTGAACGTGAACATTTCAAACTGCAGTTCTACAAGCTGCTTCAATGTCGGGCTGAAGCAATTTTAGAAGCTGGGAGCCGTGTAATCATCTTGGGAGATGTGAATACATCCCACCGGCCCATAGATCACTGTGACCCAGATTACATAGATGATTTTGAGGATCACCCCGGGAGGAAATGGTTAAATGGTTTACTGGTTGATGACAGTGAAGGAAAGGAGTATGAAAAAAACAATGAGGAGTCTGAGAATACCTCATCAAAACCCCTCCGCAGCGGCAAGTTTGTGGACACCTTCCGCCATTTTCACCCAACACGCTCCAAGGCCTTCACCTGTTGGAACACTATGACTGGAGCCAGGCAGACCAACTATGGCACACGTATCGACTACATCTTCGCAGACCATCCCTTGGTTAAAATGGGGTTTGTGGCAGCAGACATCATGCCAGAGGTGGAGGGGTCTGATCACTGCCCTGTCTGGGGGAAACTGTGCTGCCCCCTCCTGTCCAGCTCCAAGCTGCCTCCCCTCTGTACCCGCAACCTACCAGAGTTCGCTGGCAGGCAGCAGAAACTCTCACGCTTCCTCATCAAGATGGACCAACAACAACCTGTCAGAGAGGCCTGCAGGGACCCACTACCAGGATCTCAGGAGACTGGGGAGACCCGAGAGAACCTGAATCCACTGGGATCAGCAGGGACCACCTCCACTGGAAAGAAACGGAAGTTGGCAGTGGAATCTGGTGTCCCAAAGAGCAAAAAGATTATGACATTGAAGGCTGCTACCCCAAAGCCCCAGGGCAACCTCCTAGCCTTTTTCAAGCCCAAATCCGTACCTGTGGCCCCAACCAGGGAAGACCCTGTGAGTCAGtgtgagaggggagaagagagaaatgaAGTGACCCCATCACAACCACATACCTTCAAGGGAGGACATTCTGCAGGACAAGATGTTCCATCAATTCCAGGCACGCCGTGCACAGAATATCCCCAGGGTGTCTGTATGGGAGACAAAGTCCATGTACCGGGCAGCAACATACAGGATGCCAGTGTCAATAGTCAAAACCAGGAGAAGGATGCAGCCCTGGCttctgaggctactgtagacccccCATGTCCCAGGAAGGGGGCTTCACTGGGCGGGTTCTGGAAGACGGTCCTGCGTGGGCCACCCCCACCGCCCCCCTGTAAGGCTCATGGGGAACCCTGTGTACTCCGCACAGTCAAGAAGGCAGGTCCAAACATGGGCAAGCAGTTCTTTGTGTGTAACCGCCCTCAGGGCCATGCATCCAATCCCGAGGCTCGCTGTAACTACTTTTCTTGGGTGGATAAAGGAAAATAGTGACTATGCCGTAGAAACGCACTGACATTTCCTCCATGTGGTGATTTTATAAGCTTTGTTAATCTGTTTGATATATTAGTCAAATAAAGATAGTAGTTTTATAAATGTAGTTTTAACTTCGCTAATGTATTTCACGTAATCACATTGAGGCCTTTCTCACCATATGACAAGCATCCCAAAGATTCTGTTGGTGTGTATTTTTACTGCTTATGAAATTACAATGGATGCTAAACTTAGTCACAGAGTGATCTGTTTCTCTTCATCTATAGTGCAGCATGAATATACAGCGTTTCTTTTCAGGAAATAGTATTCCTTGTGTTCTTTAAGAACTCAAGTATGATCATCATAGGTCTGCATCAATATTTCTACAATTATCTCAAAGTAATTAATCATTCTATAGAGCTCAAATATGGAGTTGGGTATGCCAAGGTTTCATATCCTTCCTATGCTtatgaatattaatatttattTATGGTCTTTCAACTTTGCATGTCAGGAGCGGAGGAGGCTCTTGTGCAACCATTAGAGTCCCCATATTATTTATATTTCCCCTATTTCATTTACAACACAGTGCTGATGGCAGTAGTTTCCATTAAAATTGGTCACCTTACTATAGAAGTTCTAGGTAAGACGGACCCAAAAAAG

Function

GO: NA

KEGG:

id description
K10772 APEX2; AP endonuclease 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU936257 lncRNA upstream 36138 58216176 ~ 58250307 (+) False G823459
TU936131 lncRNA upstream 167679 58116974 ~ 58118766 (+) True G823347
TU936200 lncRNA upstream 192165 58093184 ~ 58094280 (+) True G823409
TU936183 lncRNA upstream 210508 58069667 ~ 58075937 (+) False G823397
TU936184 lncRNA upstream 212736 58069667 ~ 58073709 (+) True G823397
TU936354 lncRNA downstream 44523 58334651 ~ 58334911 (+) True G823549
TU936356 lncRNA downstream 46313 58336441 ~ 58336705 (+) True G823551
TU936298 lncRNA downstream 47615 58337743 ~ 58338492 (+) True G823496
TU936357 lncRNA downstream 48366 58338494 ~ 58340182 (+) False G823552
TU936358 lncRNA downstream 48366 58338494 ~ 58339168 (+) True G823552
XM_036988473.1 mRNA upstream 265853 57984189 ~ 58020592 (+) False LOC110532463
XM_021616396.2 mRNA upstream 265853 57984203 ~ 58020592 (+) False LOC110532463
XM_036988474.1 mRNA upstream 265853 57984889 ~ 58020592 (+) False LOC110532463
XR_005053299.1 mRNA upstream 327483 57342345 ~ 57958962 (+) False LOC110532462
XM_036988487.1 mRNA downstream 8645 58298773 ~ 58321350 (+) False LOC110532471
XM_021616413.2 mRNA downstream 10192 58300320 ~ 58321350 (+) False LOC110532471
XM_021616414.2 mRNA downstream 19610 58309738 ~ 58321350 (+) True LOC110532471
XM_021616416.2 mRNA downstream 31473 58321601 ~ 58331563 (+) False LOC110532474
XM_021616418.2 mRNA downstream 31473 58321601 ~ 58331563 (+) True LOC110532474
TU936255 other upstream 36138 58247114 ~ 58250307 (+) True G823459
TU936266 other upstream 41461 58205263 ~ 58244984 (+) True G823467
TU936157 other upstream 257588 58028619 ~ 58028857 (+) True G823373
TU935738 other upstream 370911 57342401 ~ 57915534 (+) False LOC110532462
TU935064 other upstream 1522905 56762625 ~ 56763540 (+) True G822404
TU936293 other downstream 98543 58388671 ~ 58390570 (+) True LOC110532478
TU936410 other downstream 229091 58519219 ~ 58535643 (+) True G823580
TU937506 other downstream 378026 58668154 ~ 58671251 (+) False LOC110532492
TU937515 other downstream 394021 58684149 ~ 58684510 (+) True LOC110531219
TU937616 other downstream 564717 58854845 ~ 58856699 (+) True fkb1a

Expression Profile