RNA id: XM_021616416.2


Basic Information

Item Value
RNA id XM_021616416.2
length 2463
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110532474
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 58321601 ~ 58331563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAACACATTGTAGAAGGCAGAAGAGAAACCATCTGCACCATTTCAACTTGTTATTCTAACAGTCAGTGCCTGTTTGAGGAAGAGGACAGAGGCACGTCAATGCTCCGTTTTGATACTACGTAGATATTCTGAGAGGGACTATGAGTCGGGGATCTAAGTCTAAAGGAGTTCAGGAGTTCAGTCCCAGCTCTCTGCTGAGTCCACAGGAGAATGAGAGGCTGGAAGACCTGCTGGGGAGGAGGTGTGCTtcccTGGCCACTACCGTAGCACAGCTGTACATGGCCCTGCCCCACAGTCCCACCTGCTGGAGCCTGCAGCAAACTGGGGTGGCCTGCTTCGTCAAGGACAACCATCGCCGTTCCTACTTCATACGCCTCTTCGATGTCAAGAAAGGACAGCTGATCTGGGAGCAGGAGCTCTATAACCAAATGGTCTATCACTGTGCCCGGCCATTCTTCCATACCTTCGCTGCAGATGACTGCCAAGTGGGGCTGAACTTTGCAGATGAACAGGAGGCTGAAACCTTCCTTAGTGCAGTTGATGAGAAGATCAACCAGAGAAACCGTCAAGTGTCAGAGAAGAAACAGCGCCCCCTGCCTTCCAATGACGGAGGGGGACGACCTCCACTTCCTGGTAAAGCAGGACCTGGCAGTCCCACTTCTCCCTCCATGGTCACCATGGACATCCAGAACCCAGACATCCAGGCTTCACGCTACCGCTCCGTCACACCTGTACCTGCCCCTGCCTTTGTCAGTAAGGGAAAGAAGGACAAGAAAAAGGACAAGAAGAAGAGCAGTAAACTTTCCAAAGCAGACATTGGAGCACCGAGTGGGTTCAAacatGTGAGTCATGTGGGCTGGGACCCCAACAACCTGGACCCTGACCTGAAGAAGCTGCTGTCCTGTGCTGGGATCAGTGAGGCTGAGTTGAAGGATGAGGAGACCTCCCAACTCATCCAACAAGTCATTGAGAACTCAGGCGGCATGGAGGCAGTCAAAAAGGCCATGAACACTGGTCCTGGGCCTCCTCACCCTCCGCCTGGTAGGCAGGGTCCTCTCCCCCCAGTACCAGGGAGCTGTTCCTCCCCTcctgcccctcctcctccacgAGGAGGTCGCTCTGGCCCACTGCCCCCTGTCCCAGGACAGCCAGGGCGTGGCCCGCCCCCCTCCCAGCCCCCTCCTTCACGTGGAGCCCTGCCACCTCCACCCCCGTTAGGCGGCCGAGGTGGACTCCCACCACCTCCACCCTCTGTGTCCCATAGTTCtcttccacctccccctccccctggtCACCATCTCTCCATGCctgcacctcctcctcctgctccatccaCCCCCAGTCGAGGAGGCCCagcacctcctccacctcctcctcccccgccTCCCCCAGCCCAGAGCTCTGGAgactttcctcctcctcctcccccctgtaAAGGTCCCCCACcacctgctcctgctcctgcatcttcaggtggaggtggaggtggaggtggaggtggaggtggaggtggaagaggagCTCTGCTGGATCAGATCCGCCTGGGAAGGAAGCTCAAAAACGTCACAGACAGTCCTGAGCCACCTCCGCCTGCCCAGGAAGACTCAGAGGGTATTGTAGGAGCTCTGATGATGGTCATGCAGAAGAGGAGTAAAGTCATTCACTCCTCTGATGaaggtgaagaagaaggagggtatgatgatgaagatgatgatgaatgGGACGACTGATAAGTGCATTCCGTACTGTATTATTTTCCACTCTGTAACCATGGACTTCAAAGTTAGGTTGATCCAGTTAGATTCAGTCTGCAGCGCTGAAGATCCTCTACCGCAGATTTGTATCTCACCGTGAATGCTGGAACAATGCCTTTAAATGTCAATTGCGCCGTAGTGCGGATCTTCAGCACTATGGATTGAATCTAGCCCTTACACATGGAAAATGTACACCTGAAGAATGCTACAGATAAGGATTGTGTGAAAGGcccaaaggttaaataaataaacagaacgTAGGACAAAGAAGGTTAGATGGGATAATATATCTTTTTATATCTGTCGTTTGAACGTTTCCAGTGTAGGACTCATGCTGAGtatgtacattacattacagtatgttGCTCAATATCATTATAAAAGATGGTGAGGTCTTCTACACACAGTCTTCTTTCTACTTGTTCCCATTCAAATATTTGATATTACTGGAATGTAGTATTATAACTAATATTATGCACACATATGATTTCCCGTCTTAATGTTCTACATGCAGATATTGTGTGTTTTGTGCAAATATAAACAAACATAGGTCACAAAGGCGTTAGAGAGCGCAAGAGTCACCACAATTACGACATCACAAATGGTTTTAGTAGACAAATACATGCATCATACCATACAATTACTATCTCTCAACGTTGAACAATAAGATGTACACATTTCCAAACTGAATAAAGAATGCAAAGACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU936257 lncRNA upstream 71294 58216176 ~ 58250307 (+) False G823459
TU936131 lncRNA upstream 202835 58116974 ~ 58118766 (+) True G823347
TU936200 lncRNA upstream 227321 58093184 ~ 58094280 (+) True G823409
TU936183 lncRNA upstream 245664 58069667 ~ 58075937 (+) False G823397
TU936354 lncRNA downstream 3088 58334651 ~ 58334911 (+) True G823549
TU936356 lncRNA downstream 4878 58336441 ~ 58336705 (+) True G823551
TU936298 lncRNA downstream 6180 58337743 ~ 58338492 (+) True G823496
TU936357 lncRNA downstream 6931 58338494 ~ 58340182 (+) False G823552
TU936358 lncRNA downstream 6931 58338494 ~ 58339168 (+) True G823552
XM_036988487.1 mRNA upstream 251 58298773 ~ 58321350 (+) False LOC110532471
XM_021616413.2 mRNA upstream 251 58300320 ~ 58321350 (+) False LOC110532471
XM_021616414.2 mRNA upstream 251 58309738 ~ 58321350 (+) True LOC110532471
XM_021616412.2 mRNA upstream 31473 58286445 ~ 58290128 (+) True apex2
XM_036988473.1 mRNA upstream 301009 57984189 ~ 58020592 (+) False LOC110532463
XM_021616419.2 mRNA downstream 29210 58360773 ~ 58382911 (+) False LOC110532475
XM_021616420.2 mRNA downstream 30431 58361994 ~ 58382911 (+) True LOC110532475
XM_021616424.2 mRNA downstream 53947 58385510 ~ 58389444 (+) False LOC110532478
XM_021616425.2 mRNA downstream 53947 58385510 ~ 58389444 (+) False LOC110532478
XR_002474837.2 mRNA downstream 74582 58406145 ~ 58407959 (+) False LOC110532483
TU936255 other upstream 71294 58247114 ~ 58250307 (+) True G823459
TU936266 other upstream 76617 58205263 ~ 58244984 (+) True G823467
TU936157 other upstream 292744 58028619 ~ 58028857 (+) True G823373
TU935738 other upstream 406067 57342401 ~ 57915534 (+) False LOC110532462
TU935064 other upstream 1558061 56762625 ~ 56763540 (+) True G822404
TU936293 other downstream 57108 58388671 ~ 58390570 (+) True LOC110532478
TU936410 other downstream 187656 58519219 ~ 58535643 (+) True G823580
TU937506 other downstream 336591 58668154 ~ 58671251 (+) False LOC110532492
TU937515 other downstream 352586 58684149 ~ 58684510 (+) True LOC110531219
TU937616 other downstream 523282 58854845 ~ 58856699 (+) True fkb1a

Expression Profile