RNA id: XM_021616420.2


Basic Information

Item Value
RNA id XM_021616420.2
length 3531
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110532475
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 58360773 ~ 58382911 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCTATCAATCTGTTGACGTCAAACAAAATAGACATAGGCCTACTTACtgtaggctatgtacagtaggcctatagcctaaGCCTAAGGAATGCAAACATGCAAAGGAATGGAAGATAATAGCAAGCCTATAATAAGATGATAATACAATCTGCTATTACACTTTCACATGAATCACATTTGATACTAGTTTTGAGGGACTACTGTGGTCGCTACTACAGTGAGGAAAGTTGTCTAAGGGGTTGTGAGGAAGTCAGGGTGAATGGTCTCAGGACCACTTCTTCCAGGAACACTTGTTCTAGTGCACTGTAAAAATAGAAATACTCAAAACACCATGATTGTGTGATGAAACCATGAAAAGAAGTGCATCTTTCCTGAGAGCTGTTGTTTGGAGGGTGTTTGAATGTAAACCCACCATGTGTACGTAAAGAGATTCTccagtacttttgtatactttttagccagtaggtCTGAAAGGActgctcacgagccaaaagtggcCCAGAGAATTGCGTACTACGTCACATATGAACAGATATGTGCACCACATCActgctctctcgctcactctgcTGTGTatgcatcttgctagctgtcactgaAATGGCGAgcggctgaagctcattggctagaacttCAATTGCAAGGGGTCTGGCGCACGTGAGGGAAAATGGCGCAGAACAGCTTCCTGAAAAAACATAGCTTCCAAACTAATTGAGTATGGAGGATTCTGACTACTTTGCACAGTTCCCAGAGAAGGGTGAAGATGAACCGGTGACTAAGCCAGTGCCAGACATGTTGAAGCCCAGTCCTCAGTGTCCAGTCATTCTTCAACCAGAGCTTGACATAGAGACTGCCGATGACATACCCAGTTCTCCTCTCCCAGCCAACCTAGACCTTCCATTAGCAGATGGAACACTGTCCAGTGCCACTGTATCCCTGGGTAAACAATCACCTCATGTGTTTTCCACATCCACAACACAAGCCAATGAAGTACTATCCAAACCTGTAGCATCTGAAGCCAACCAACTGACAACTGAACCAGAGCCTTCACAGGAACTGGACTGTGAATTACTAAAACTGGATTGTGAAATACCCAAACTGGACTCTGAATTAGAAGAACATGTTCCACCACCACTCCACATCAGCATTGCTGATGGCAAGaaggaggaaaagggaggaaCCTTCCAGGTGGAGCCCAAAGATAGTAGTCACCCCACACCTATGCATGTTCCTTCACCTCTCCCCAGCAATATGGATGAAGTCTTGGatggtgagaaagagaaggaggaggatagTAGTCCCTCTACACACCTGCACATTCTAACACCACCTCATGTCAGCATTGCTGAAGCATCAGATGACACGAatgaggaaaagggaggaggaaCATCCCAGGAAGAGCCCAAAGATAGTAGTTCTTCCACACCTCGGAGCTCGTCTCCAACACCTCTCCACAGCAGCATGACTGAAGCCTCAGATGTTGATgaggaggaaaaagaggaggaggagggaggagcctTCACTCTggaacacacagaaccacactCCGAACTTGACCCACCTCACACGGAGATCCAAGCCAACATGCCTTCTTCACTGGAAGATGTTTTATATCAGAGTGTGCTTTCTGCAACACCAAATGTAGTGGTGGGGAAgttggtggaggagggggaggatgttGAGGAGGTGGAGATCGAGGTGCCGGAGCATGGGTCAAAGGTGGAGGAGGATCCAAGGCAGGAAGCAGAGAAAGATGCCGAGGAGGAAAATGAGAAGTCCTTCAGAATTCAGGAGACAAGCACCAGCTCCTCAAGTCGCCTAGAACATCCCTCAGATTCCACCCACTGTAAGCTCAGCAGAGCTGAAGAGGGTAGCAAATCCCAGATAAAGGTTTTCTCTGAggcctccccatctctccctgaaGAGTCTGATGATAAGCAGCTGACATCAATGGATGACGGCATGGCCAGAGAAGATGGAGTCCTGATGCTAGAGGCTGTTGGGCCCAAGCTAGAGAGCTTCCAGGCAGGTGGCGAAGTAGGTGTAGTTGTAGATGTAGTAGCCATCTGTCCATGGCACCCTCCCATGGTGACCGTGACACACCTTGGGCCCACAGGAGAGGACAGAATGACCCAGAGTCTGGCCAGCCACACTGCTGAGCTGCCCAATGACATCTCACAGACATCCCACCCTGTGTCTCACCAGCGCTTCAAGCGAGGGGTGGCAGCCGGCCTGAGCGAGCTGGCAGCTGTGCTCTCTGAGGACTCAGGCAACTCTAAGCAGCAGGATGACATCACTGCTAGGGAACACACCACTCCTGGGTTGGAGAGCCAGACACCTCTGGGAGTTCAGCGCAAAACTGTATCTTTTGCAGTCACAGAGAACATCTCAGAGTCATCCATGACCATGACCCAAGATGGTACTAGCAGTTCAAATGAGGAAGACGCTACTTCGGCTGACGAAGAGGAGGAGACTTTCCAGGTTTCCTCAGAAACAGGTCTACCAAGCAGATCATCAGAGGCTCAGATCACCAAGCCCCTAAGCCCCCAGGCTGAACcgaccctggacaggacactgatccCATCCATCATATTCCTGAGTGTGGCCATTGGTCTCGTCGTCGGGCTTCATGAACCCAGCACCTTCCTCTTCATGGGACTATTCcttgtctccctctgtttctgagGTGTTTTGAGGGGTTCCTCCTTTTAAAACGTGTGAAGTAACTTAACCCCTTTTTAAGTGCCTTTTCATGCTACCAAACAATGTTGTAATATGTGCACAATTGGTTCCTggtgttttattttaaatgtgtgCTTGTGGAAGTgtgtatatttttgtttgttttcacaaAAGAGAAGGGATCTTGTTCGTTAAAAGTAGCGAGAAGTTAATTGGATTTCCAGTGTTCCATGCCAAGAGTTAGTCAAAAAACTGTTTGAGTTCGTTAAAACATAGCCATGCAAAACTAAGGCCTAATTTTGTTCTTAAAGGGTTTGAGTATGATTTTGTGTATAAAACATGGAAATCCAAAGAATTGTTGAGAAGTGTGACTGTCGGCTGTTTGGAATCGGAATGTATGTATGTTCTAGATTGGGCTGGGAGACTGAAACTGGTGAAGCAGTAGATTGTAAGGTAAACACAGGTTCCTTGGGTAAGGACAGTAGCTACAAGATAAAGTATGTTCATATGACTGCCTAATGCAAAATGTTGTCATTTGTGCTCTGAGAATTGCCAGTCCTCACATTTTAGAATAGTGGTGTGCTGTGGTAATCCTTTTACAGTTGTCTACTGTTGCTGCTATCAGATGGTAGTTCATGCAAGTTAAAGCCTACACAGTTTCACAATTTATCTAGCCACAAATCTAGATAGACAGAAATTAGACTGACTGAGTTTTAACAACTCTTCACTGTGATGATACCTGAAAGGATGTTTGAAGTGATTTATGTGTTTGCGGTGTGTGTATGTCTGGGTATGGTGCGTTATGGTTTGCATAAAATCAGATGAATAAACTATGTGCTGGTCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU936366 lncRNA upstream 14055 58347588 ~ 58347939 (+) True G823556
TU936363 lncRNA upstream 15452 58341403 ~ 58346542 (+) True G823554
TU936357 lncRNA upstream 21812 58338494 ~ 58340182 (+) False G823552
TU936358 lncRNA upstream 22826 58338494 ~ 58339168 (+) True G823552
TU936298 lncRNA upstream 23502 58337743 ~ 58338492 (+) True G823496
TU936300 lncRNA downstream 7938 58390849 ~ 58391743 (+) True G823498
TU936378 lncRNA downstream 23502 58406413 ~ 58407939 (+) True LOC110532483
TU936379 lncRNA downstream 27345 58410256 ~ 58413624 (+) True G823569
TU936450 lncRNA downstream 59105 58442016 ~ 58442219 (+) True G823600
TU936407 lncRNA downstream 113841 58496752 ~ 58497838 (+) True G823579
XM_021616416.2 mRNA upstream 30431 58321601 ~ 58331563 (+) False LOC110532474
XM_021616418.2 mRNA upstream 30431 58321601 ~ 58331563 (+) True LOC110532474
XM_036988487.1 mRNA upstream 40644 58298773 ~ 58321350 (+) False LOC110532471
XM_021616424.2 mRNA downstream 2599 58385510 ~ 58389444 (+) False LOC110532478
XM_021616425.2 mRNA downstream 2599 58385510 ~ 58389444 (+) False LOC110532478
XR_002474837.2 mRNA downstream 23234 58406145 ~ 58407959 (+) False LOC110532483
XR_002474838.2 mRNA downstream 50210 58433121 ~ 58447861 (+) True LOC110532485
XM_021616444.2 mRNA downstream 65020 58447931 ~ 58496358 (+) False LOC110532488
TU936255 other upstream 111687 58247114 ~ 58250307 (+) True G823459
TU936266 other upstream 117010 58205263 ~ 58244984 (+) True G823467
TU936157 other upstream 333137 58028619 ~ 58028857 (+) True G823373
TU935738 other upstream 446460 57342401 ~ 57915534 (+) False LOC110532462
TU935064 other upstream 1598454 56762625 ~ 56763540 (+) True G822404
TU936293 other downstream 5760 58388671 ~ 58390570 (+) True LOC110532478
TU936410 other downstream 136308 58519219 ~ 58535643 (+) True G823580
TU937506 other downstream 285243 58668154 ~ 58671251 (+) False LOC110532492
TU937515 other downstream 301238 58684149 ~ 58684510 (+) True LOC110531219
TU937616 other downstream 471934 58854845 ~ 58856699 (+) True fkb1a

Expression Profile