RNA id: XM_021616425.2


Basic Information

Item Value
RNA id XM_021616425.2
length 3672
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110532478
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 58385510 ~ 58390570 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATAGGCGAGCAGCATCCACACAAGCAGCCATTTAATTCATTGGGATTACTTTAAAATCATTCATTTAAATACTCAACCTTTTTTAGTTTGACCGTAATGCGATAAGAATTCCAATAATTATAATTTTCAATATGCCAAATCAAATGAGGTCCGCTAGAATTAGGCAGACAAATGCAATGTGGACCTTCACCTGACAAAAAAAACAGACTGGCTACAAATGACGGGGTTAATAAATGCACAGCGTTCACTTCTAAATAATGAAAATAGAGATTCATCGAGGTTATTTTGAAGACGGATGGATGGAAATGCATAAACAAGGAGCGTCAAGACGTTCTTCAATGGAAACTCGATATTTCACCGCTATGAAAATCTTAGATCTGACGATATAGAGGAAGATAGGTTGTATTGCAGGCTACATAGAAGCTAGCCGCCTACGTGCTGTAACCTCTCCTAAATTGTCTTTAGACTCTATATTTACCTCGACGTGACAATACATCCGAAGATCGTACAAATTACATGAAATGATGGACACGAAAATTGGACACAACCTTTGTCTGTGTGAAACTTATGTTTAAGAGGCTCAGTGAACATTAGGCTACCTGTGGCCGAATCGTATCATCGCTCAGAGGACAGACATAGCCTATCTTGAGTGTGGTCGTTTCAATATTGACTGAAGAATGTGTTAATATCAGTGTCAGTGCCGCCTCTCTGACTGAGGTTTCCCGCATCTTTACAAATCCCAGAAATCGAAGGCCTCCCTGCAGACCCAGATCCAACAACAGGTGCGTCCGTATCGTTATATGAGTTGCCTGGGCGCGGCGCTGTTCAGTGGCAGTGGTGCTGATAAATCTGCGATCAGTCCTTTGTTTTAGTTCGCGCTGGTGTGGCGCTGTCCATGGTGATAAATGTTTGAGTGCTGGACACAACAATGAATTCCCGAAGGTCAGTTAGTTAGATTTCTTTATTGTACCTGCGGCTTCTACAATTAAGTTACAACATGTTTGGGTTATGGTATTCTAATGTGCAGAAAATAATCTAGtttcctcttcaatgccctgcATGCAATGTAAACATTTCCTTGCTATATTGGTATTACGTTTAGTCCTACATTGTTCATGGCCTATGTATTCAAATATTAGGGAATCGTTTATATTCTATGAAGTCAACAGGTTAATCAATCACTCTCAGATATACTCATAGACCCACATCTGCTTCCCAACTCCTTTGTTCAGCTGTAGGCTCAAATGGTAACTTTATTTCCATTTTACAGTGTCTTTTTAATCACATACAATCAATTTTAAGTACCCTTTTTTGGCACAAACACTATTTTCACATTTAGAATGTGAATTAGTTGCTCTATTGCAGTCTGTCTTATTGTACCTGATTGATTGTCCTCTGCTCCATCCCCTATACACCCCCATGCATGCACTCAAACACCTACACTCCTGAACAAAGTATGTGAGCTGTTGTATCTTAGCAACAGGCAAGGTGATTATTGAGAGCGCCAAGGAGCGGGCATGCTGGAGAACTGCTGATTTGATCCCAGCAATAGAAAGACAGGAAGGTGGAGATATCATCACTGTTGCCCAACACACGTTTCTGGAAGCCATGTTTTAGTTTTGCTTGTTGTTTTTATGGATCTGAATCGGTCTGACAAAGGTATGAGCCAAGGCTGCCTGCTTTACAGATGATTGCTCTCTGgtaaatgtttaaatatgttaGTTATGTTCTCCTGGAGTTAGTGTCAATGCACTGTCTTCTGTTTCTTTGTTCACAGGTGCTAAATGTAATGGAGACAAATGAGCCTGTTATGTAGAATGGATCCTCACATATCCCTGTAAGAGGCGGGACAAAGGAAGAAAACCCCAGGACGGACGATAGGAGGGCTGCCGTGCCATAGGCGGAAGAGTGGCGTCGGtccgagagagagggggtagaatcACCCTAGCACCTTACCCCTAGGATCATAGAGTTGAAGGCATGTCTAACCAGACCCAGATCTTTGGCATAGATGGCCCAGGGAGCCTGCTGGCAGTGTTGGCCTCACAGAGGgccagtagtattagcagcaccAGCAGTGAAGGAATCTCAGCTGCGGCCGTGTCCACCTATGTCAAGTTGGTGTTCCTGGGCTTGATCCTCTGTGTCAGCCTAGCAGGCAACCTGCTGGTGTCTCTGCTGGTCCTCCGAGACCGGGCCCTTCACAAGGCCCCCTATTTCTTCCTGCTGGACCTTTGCCTAGCTGATGTCATCCGTTCTGCTGCTTGCTTCCCCTTCGTCCTGGTGTCTGTCCACAACAGCTCAGcatggacctacagtgccttcagctGTAAGCTGGTGGCCTTCCTAGCTGTGCTCTTCTGTTTTCACGCTGCCTTCATGCTGTTCTGTGTGGCTGTGACCCGCTACCTGGCCATCGCCCACCACCGCTTCTACGCCAAACGCATGACGGTCTGGACCTGCGCTGCCATCATCTGTATGGTCTGGACTTTAGCCATTGCCATGGCGTCTCCGCCTGTCTTTGACGTGGGGACGTACAAGTTCATTCAAGACGAGGACCAGTGCATTTTCGAGCATCGCTACCTTAAGACCAATGACACTCTGGGCTTCATGCTCATGCTGGCCGTCGTGGTCCTGGCCACTCACGGTTTCTACACCAAACTCCTGCTGTTTGAATACAAGCACCGCAAGATGAAGCCTGTCCAGCTAATGCCAGCCATCAGCCAGAACTGGACCTTCCACGGCCCGGGTGCCACAGGTCAGGCAGCAGCCAACTGGATCGCAGGCTTTGGCCGAGGCCCAATGCCCCCCACCCTGCTGGGCATCAGGCAGACTTTGCACAGCCAGCAGCAGCAGCGCCTGCTGGGCATGGAGGAGGTCAGATCTGAGAGGAGGCTAGGCAGGATGTTCTACATCATCACCCTGCTCTTCCTGGTGCTCTGGGCTCCCTACATAGTGGCCTGTTTCTGGAGGGTGTTTGTCAAGTCCTGCTCCATCCCTCACAGGTACCTCTCCATCACAGTGTGGATGAGCTTCGCCCAAGCAGGAGTCAACCCTATCTTCTGCCTCCTGCTCAATGAGGACTTGAGGAAAGTGCTGAGGGCCCACCTGCCCACCTACAGCAGGACTAGACAACACCAACAGCTGCACCGCCATGAGCTGTTTGTGTTCACCATCACATGATGCACTACTATATCGTGTGATGGGGTGGGATTGGGGTGCTTTGTTTGTATCATACAGAAATGCCTATCTGACCTTTTTTTGTAAAGAGAATGTTTATCAGACGCTactatttttgcaaatgtattacgaCTTTGTTTCATTTGTAATGTGCagatgatgtgtgtgtggagaCATGCAGTATGAGAAGCAGGTTTGTAGTAATACTAGTAATGAACATTCTCAGTAGATTATCTCATTAACATGTTAAAACTGATTTTCTTTAGTTCAATAGAGGGGATTGCAACGTCACCATAAATAGCAGGATATACTGTGTACAAAACTTTTGAGTTGCACTCCCCCATgttaccctcagaacagcttcaattcttcagggcatggactctacaaggtgtcgaaagtgttccaccggtatgctggccaatgttgactccaatgccttccacagttgtgtcaagttggctggatgtcctttgggtggtggcccattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU936366 lncRNA upstream 37571 58347588 ~ 58347939 (+) True G823556
TU936363 lncRNA upstream 38968 58341403 ~ 58346542 (+) True G823554
TU936357 lncRNA upstream 45328 58338494 ~ 58340182 (+) False G823552
TU936358 lncRNA upstream 46342 58338494 ~ 58339168 (+) True G823552
TU936298 lncRNA upstream 47018 58337743 ~ 58338492 (+) True G823496
TU936300 lncRNA downstream 1405 58390849 ~ 58391743 (+) True G823498
TU936378 lncRNA downstream 16969 58406413 ~ 58407939 (+) True LOC110532483
TU936379 lncRNA downstream 20812 58410256 ~ 58413624 (+) True G823569
TU936450 lncRNA downstream 52572 58442016 ~ 58442219 (+) True G823600
TU936407 lncRNA downstream 107308 58496752 ~ 58497838 (+) True G823579
XM_021616419.2 mRNA upstream 2599 58360773 ~ 58382911 (+) False LOC110532475
XM_021616420.2 mRNA upstream 2599 58361994 ~ 58382911 (+) True LOC110532475
XM_021616416.2 mRNA upstream 53947 58321601 ~ 58331563 (+) False LOC110532474
XM_021616418.2 mRNA upstream 53947 58321601 ~ 58331563 (+) True LOC110532474
XM_021616414.2 mRNA upstream 64160 58309738 ~ 58321350 (+) True LOC110532471
XR_002474837.2 mRNA downstream 16701 58406145 ~ 58407959 (+) False LOC110532483
XR_002474838.2 mRNA downstream 43677 58433121 ~ 58447861 (+) True LOC110532485
XM_021616444.2 mRNA downstream 58487 58447931 ~ 58496358 (+) False LOC110532488
XM_021616442.2 mRNA downstream 67328 58456772 ~ 58496358 (+) True LOC110532488
XM_021616447.2 mRNA downstream 266833 58656277 ~ 58665931 (+) False LOC110532490
TU936255 other upstream 135203 58247114 ~ 58250307 (+) True G823459
TU936266 other upstream 140526 58205263 ~ 58244984 (+) True G823467
TU936157 other upstream 356653 58028619 ~ 58028857 (+) True G823373
TU935738 other upstream 469976 57342401 ~ 57915534 (+) False LOC110532462
TU935064 other upstream 1621970 56762625 ~ 56763540 (+) True G822404
TU936410 other downstream 129775 58519219 ~ 58535643 (+) True G823580
TU937506 other downstream 278710 58668154 ~ 58671251 (+) False LOC110532492
TU937515 other downstream 294705 58684149 ~ 58684510 (+) True LOC110531219
TU937616 other downstream 465401 58854845 ~ 58856699 (+) True fkb1a
TU937747 other downstream 635756 59025200 ~ 59028143 (+) True ppdpfa

Expression Profile