RNA id: XM_021616442.2


Basic Information

Item Value
RNA id XM_021616442.2
length 7285
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110532488
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 58447931 ~ 58496358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacagtgttgcATCCAGTAGAATCCTATTCAGCAGTAGCAGACATGCTTGATAGTGCTGTGTGCGGATCAGCAGGCTCCTTACCGCTGGGCAGGAACGCCTTTGTGTTCCCCTCTGCAGTGGGGGAGTGCATTTACTGTCGTGCCTGAGGGGAGAAGCCAAGACAATCCCCCAATCAGCCGTCAGTGATTTCTATCATCTTCTGAGTGTGGTGATTGGGATTTATGTCCAACCTGAGGGAGGCAGTGTGCTTTACACTCTGGCTCTATAAACCACCTGGATGGACGCTTTTGTCCCTCCCAACGCTTTTGTTTCTAATTGCGGattttttaaagaatgaccaaCAGACAAAAGGTGGATTATTACTGCAGATCTGGTACCTCACATTCTTGATTTGATGTTATTTTCTTCCTGCAGTAGAAGATGGATGAACTTTCTTTTTCTGGGCTCTAGTTTAagctttgtttttgtttgtgaGGACATAGAGTGGCAGAAGTCCTGCAAGAGGAAATACTCAAATTTTCTGTCATTTCTCATCACTACATTttacatctcctctccttctttccttcGTGGATCTGTAGAGTCCATACCTGTTAGACTCAGATCATTCACATGACAGATTGTGGGTCTCAAACTAGAGGTTTTACAATAGTGGCCAGGTAAGAATTAGAATTTGCGTACATCCTCATGCGATGAAAGGCTCAATGTGGAACTGAACATGGAGAGAGCGTAGGAACCGTTGGGACATTTGACACGCCTGTTTGGCTTTCAGCACCTGCTGTGACTGTCTGACACAGTTCTACAGCTAGACTGGCATTGGCTCTGGTGCTTACTGCCTAGCCTGACAGACtgggagttttttttttacaagtgtgtgcatgtctgtgtgtgtgtgttgatcttTTATATTGCAGTTGGTTATATACTGTGTGTATGTGCCAGTGTCAAGGATAACACTGATTGTCTGGAGATAGTACAGGTAGGTGTAGTCAGTGAGGCTTTGAGGAAGGATTACAGAAGCTAACACCTTGTTTTTGACAGTAGCTTGGCTGGGCAGAGGTGAACTTTTGAAAGCATAAAATGTTGAGTGATGTCCAGATTGCAGGGCCTTCTGGAGGAAGTGCTGATAAGACTTAAACGTTTAACTTGTTAAAGGTAATGAGACCGAGACAGTCAGGAGAGATACAGGCTGTAAATGGTTACACGGTTACAGTATAATGCCGTACGTTTCCACTTCAGCATGCATTATCTTAGGGGATAATGAGAGAAGGAGTGCAGGATTTAAGTCAATACACTGAATTAGTCCACTTAAACAGGTGAAGGACGGATTGAATGATAGATAGCAATGAGAGAGGAGCAAGAGGCATACTTTCAATTAACACATTTTAATGAGGAAAACAAAGACCCTTAAACCTTATATTTCTAATGAAAAGCCCATTATTTTACACATGGCTTATCATTGGTGTTCTTAATGTTGACTCGTCCTGATTTCACCAATAGTCctgaaaacacaacatgtaattgatccCTTAGAGGTTTTGATATAGATTATTGCACATGACTGAGTAGGAGGGTTCCTGTTCTCTAACAGGCCTATAATTTAATTATAATTTTCCATTCAGTGACACCCCAGATCAATAGCCTCCAGTGTTTCAGTTGATTGGAAATGCCCTGGTTTAGCTTATCAATGAGCCATAACTGTCAAAAGAGCTGACTAGAAACCTGAAAGAACACCTGAAGCTGAATCTACAGTTTGTCTCACACACCTTCTGCAGACAACTGTCTAGTTTCCTCAAACACTCCACAGTGATAATTTACATGATATACATTTTGTATGTAGACCAGTGTCAGTGAAACAGTTGTATCCTAAAAGGGGTTCTTAGCGTCTGTTATTCTGACAGATACACAACATCAAGCAGAGAGGTGCAGTTGAGACAGCAGTTTCCTCGTCTGTTGTTGCCTCACTGGGATTCGTGTGCAGGTGTGCGTGTTATTGGGTTTCGTGTAGCCAATACATACTGCTAATCTTAGCTCAACAGCCAGGGCTTGAGATTCAGGCAGTAGGATAGATTGTTCAGTGGGcagattatctctctctcctcttggtcTGTTTCAATGGAGGTAAACCAGAAGAtgtcaatgaccccaagcaccaATGAAAAAGTACTGAGGAGTCCATTGATCCTGAAAAGGTGAAAGTACCAGAGCAAAAGAAAAGTGAAACCTGAGAAAAAGGCCGTCAGAGGGATAACTTATCACACAAGCCAGACTCGAGCAATCCTTCTAAACCTGGAAAGCGAAGAAGGTGGGAAAATCGAGAGGGAGTGTTAGGGGAAAAAGAGGGCAAGAAGTTATTTGATATCGGTGCCTGACTGCATCTGAAACTTTGAAAGAGTTTCTTTAAAAGAGTGCTGAGGATTAGCTGAGCTGAGCGTGAGACCAGGGAAAGGAGTGGGCGAGTTCACGTTGAGTTCCATTGGGGAAAAAGTCTCAGCTAGTTGAGAGAGACAGCTCAAAAGGTGACTGTTCAACAGAAATCATGCAGAATTAGGCTGCATACACTTTAGGTCTAGGTCACATGCATGATTATTATTGACAGGTGATTGAATCATTATTGTATAGTTATGATGGACTGTCttaaatacaatacaacacaataacacCGATCAACTGTCAGTCCTTTCAACCCATCCTCAGCTCCCTTGTCAACTTACTCATctctcagtcccccccccccccccccctccctccctctgactcACCAGTCCAAAAATCATGATGAATTCACGCAAAACCTAACCTGAACATAACCACTCCACGCTTATGAAGACAAACAAAGATATGTGTACTCTGCAATGGGGACAGAAACAGATGGGAGGACACCCAAAACCCTTTTTTAAATGTAGGGATTAGGTTTGGATTGTAAAACTTGACATCTGGAACGAGGATAGGAACAGGACACAGGGACACAGCCTGTTTTTGGGGACAGAGAAACTCTGATATCCATAATCCACAGTGCCCTGAAATAAGAGGGGTTGACACTCAGGACCTGTAGGTCTGTGGGGAGCTCTCTGACTGCCACAccgaagggagagagaggtgttttaAGGTACTGTTCTCCTGGACTAGTTTGGCCCCGCCTGGCCTGAGTCCAGGACACCATGGGGTGTAACATGTGTATGGTTCAGAAGCCTGAGGAACAGTACAGGGTCATGTTCCAgaagGGTCAAATAAGTAACATGCTGTGCTCTTTAGATGGAGAAGGTCGATTGAAGGTGAATGGTAAAGAGCTGTCTCGTCTCTCTGGGGACACCACCCTGGATGTGAAAAACCCCCTGCTGTCTCACGTGTTAAGGAGGGGGACCCGGAGGCGGGCGGGACATGCAGGGCGACTAGCGGGGCTGGACGGGACAGTAGCAGTGACAGGGGggatgactgactgtgtggacaGCGGCACTCAGACTGACATCAGCTTCCAGCACATCTTGACCCTGGGAAGGACCGCCCACAACCCATGTGGAGCCCCGCCCCCGCCCCCtcacccttccccctctccaccgTTGCCACCCATCCTGGAACCCTACCTGCTCAATGAGCTTCTCCTAGAGCCTGAATATTATGAACCCAACAACTACTTTGACATCCCTCAGCAGGATGGAGATCTCCGACAGGATGAGTTAGAATACGAGGAGGTTGAGCTGTATAAGTCTCGTCAGCAGGACAAGCTGGGGTTAACGGTGTGCTACCGGACAGACGATGAGGAGGATCTGGGGATCTATGTGGGCGAGGTCAACCCCAATAGTATAGCTGCTATGGATGGCCGCATCCGAGAGGGGGATAGAATATTACAGATAAACGGGGTGGACATTCAGAACAGAGAAGAGGCGGTGGCCATTCTTACCAGGGAGGACAGTACCAACATCTCCCTGCTCCTGGCCCGGCCCGAAATAGAGAATGACAACCAGCTGGACCCAGATGAGCTGGAGCTGGAGGTTCTGGATAATGCCGTCCATCTACCTAGCCCCCATCAGCTGAGGAACGGGGCCTCCGTGCTCGATGCAGAACCAGGGGTcatgggtggtggtggggtgggagGCCGTGGGTGGGGTCACCGTGACTCTCCTAGCCTGCTCCACACAGTGCTGAGTAACAGCCAGGAGCTGGACAGCGGGGTTGGCCGTACGGACGAGAGCACCCGCAACGAGGAGTCCTCAGAACATGACCTGCTGGGAGACGACCAGACCAGTGCCCCCACCACCAACGCCACCAACACCCCCGGCAGCATGCGCAGGTTCCACTCTGGCCAGGGGGACAGGGACACCCCACCCCTGCTCCATGGTCACTCCACAGAGTTCCACTTCAGCACAGACTCTCTGCTGGGGCTGGACTGtctgggtggtggaggaggaggggggggtgttGACCTGGCAGGGGAGAGGGTCTATACAGCTGACCCAGTGAGGATGATGCCTGGACTGACGGAGGAAGAGTGCGATAGGTACAGGGAGCTCCTGGAGATCAAGTGCTACTATGAGAAGAACGGCAACGCTCTTCTGCTGCTGGGGGAGCATGGGGGCGATGGGGGGATTCCTCTGGATGTGAACAGGAATGAGAACCTGATGCAGCATGAGATGGCCCTCCTGGAAGAGGAGCTACGCCATCTGGAATTCAAGTGTCGTAACATCCTGAGGGCCCAGAAGATGCAGCAGCTCCGGGAGCGCTGTCTGAAGGCATGGcccctggaggaggaggaggaggagagcggagCCGGAGGTGGGGCCGGGGCTGGGCGGGTGGCTCTTCTGGTTCTCGAGGAGTCCTGTATCCATGAGCTGTCAGACATTAATGAGCTCCCTGAGAGGGAGCGCTCTGACAAGGACAGCACCAGCGCCTACAACACAGGAGGGGAGAGCTGCAGGACTACCCCTCTGGTCACCGAACAGTACCCCTCCCTCACTGCACATGGCCGCAGCAGCCTGGAGGGGGGAGACTCAGCCTTTTTGCAGTGTCGGACCCCCAGCCGGCacagggagaggggaggcaggagggaggagagggggcaggCTAACCTGAACCAGCCTTACTCCCCTAGCTCACACAGAAGGGGAGCGGAAGCCAAGACCTCCAGCCCGGGAGGCGCCAAGTTCAGATCCTTATCCCGCGACAGGGCGGCCAGGAGGGGGTCGGACGGAGGTGCGGGACGCCCCAAAACCAAcgggacagtagaggggaggggaagaggacatAGTGCTGAGAACAGCCCTTATCTGTCCCGCCGCCACTCTGGCCCCAGAATCCCCCAGCGCTACCAGAGCTGCATGCAGCTGAGGTCCCCCTGTACCTCCGAGGGCCTGGAGCGACCCAGGGAGGGCAGCGACAGTCCCATGAGTCTGGGGAGCACATGTAAGAACATGCCCTCCTTAcccatcctccctcccctcctgccGCCAGCCTCACCACGTATGGAGTGGAAGGTCAAAGTACGAAGCGATGGCTCCCGCTACGTTGCCAAGCGTCCCGTTAGGGACCGCCTCCTGAAGGCCCGGGCCATGAAGATCCGGGAAGAGCGCAGTGGCATGACCACGGACGACGATGCCGTCAGCGAGATGAAGATGGGCCGCTATTGGTCGAAAGAGGAAAGGAAGCAGCAGTTGCTGAGGGCCAGGGAGCAGCGCAGACGCAGGGAGTTTATGATGCAGAGCCGGCTGGACTTCCTGAGGGAGTCGCATGGCGGTGGACAACACGGGGCTACACAGGGACAGGAGCCCACTACCATCCTGGAGCTGAGCCACAGGAGGAGCCAGAAGAAACGGAGCCGTAGAATCCTGGATAACTGGATCACCATCCAGGAACTACTGGCTCACGGGACCAGGTCACCTGACGGGAAGAAGGTCTACAACCCTCTGCTGTCAGTCACCACTGTTTAAtgtagaggggagaggtgatgaggacAGAGAAAGGAAGACCAAGAGGACGAGAAGAGTGGAGAAGTAGTTTGTGGAGGGGTTGATTTAGAGGAAAATAAATCCACCTCAATCTTGTATGTCACTGCCATAGAGGAATCATCTttatatctgtgccattatagggTCCGTGACAGCCTGGGCAGCTCCATTGAGGCTATAACCCACAGGAATcaccacccagttgactactttataGCGGAAGCCTTCAATGGCAATATCCACGCTTAAACAGGTATATCCATTGAGTTTTGTTATCTCTATGGTCACTGCACATAGGACAGGGAGAACGGGTGAGATCGCACCACGTGCTGCATAGTCACCACAGCCtgtgaggagaggaagaaaagaaTGGTGCAATGTAGAAGAACAGaacataattaagcaataaggcccgaggaggtgtggtatacggccaatataccacagctaagagctGTTCCTATGCGAGACGCATCCTGgcgtgcctggacacagcccctaGTGGTATATTGGGCATATGCCACAAGCACTctaggtgccttattgctattattaactggttaccaacgtaattagagcagtaaatagTATTTTTCTCATAtccatggtatacagtctgatataccacagctttcagccaatcagcattcaggactcgaaCCACCTACTTTATAATTACCAATATTGCAACCTGTCATTTGTGCCTGAGAGAAAAGGATAAACATAGGGAGGTAAGACAAGTAAAAAGAACGCTCTGGTGAAATAAACCAACCTGTAGTTATTGACCATGCTTATAAGGACAGTGCCTTGTATGCCAACTAATATGCTTGTGTACGACATTTACAAAGCACATTGGCAAAGAACAGAGCCTGGGCCTTATTGACTAACGACTGAAATGGACATTGCGGTAAGATCTCACAAGCATGCGTTTTCATATGAATAAATTGAGAAGCACAGTGAGAAAAAAGGCACACAATGCCACAGCACACGACAACTACATATCTGGTGGTGGAGACGTGAGGAAATGTTCTAGAGTCTTTTGATGACTGGTACGATCGTATGGAGTTACTTACTCATACAGTATGACAGAACAATGAGGAGTGGTAAGTGGTTCTTTGACATTTAGTTACTTGCATGTTGACTATAAATGTAAAAAGGAACAACTTAAAATAGACTTTAAAAAGTTCAAAAATCTTAGTGTGAAATTGTGGATGTGATAATGTGACATGTTCTTCACTTGTTCAATTCTTAGACTAGAAAACTGTGTGGCCCTGTTTGTTCAGTATACTGTGATGTCTAGTCCATAAGTGTTTTACAATAAAAGCTTTTCTATATAAG

Function

GO: NA

KEGG:

id description
K15682 PDZRN3_4, LNX3_4; ligand of Numb protein X 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU936450 lncRNA upstream 14553 58442016 ~ 58442219 (+) True G823600
TU936379 lncRNA upstream 43148 58410256 ~ 58413624 (+) True G823569
TU936378 lncRNA upstream 48833 58406413 ~ 58407939 (+) True LOC110532483
TU936300 lncRNA upstream 65029 58390849 ~ 58391743 (+) True G823498
TU936366 lncRNA upstream 108833 58347588 ~ 58347939 (+) True G823556
TU936407 lncRNA downstream 394 58496752 ~ 58497838 (+) True G823579
TU936437 lncRNA downstream 41086 58537444 ~ 58538992 (+) True G823587
TU937475 lncRNA downstream 140215 58636573 ~ 58636827 (+) True G824487
TU937483 lncRNA downstream 144928 58641286 ~ 58641558 (+) True G824495
TU937507 lncRNA downstream 171796 58668154 ~ 58671251 (+) False LOC110532492
XR_002474838.2 mRNA upstream 8911 58433121 ~ 58447861 (+) True LOC110532485
XR_002474837.2 mRNA upstream 48813 58406145 ~ 58407959 (+) False LOC110532483
XM_021616424.2 mRNA upstream 67328 58385510 ~ 58389444 (+) False LOC110532478
XM_021616425.2 mRNA upstream 67328 58385510 ~ 58389444 (+) False LOC110532478
XM_021616420.2 mRNA upstream 73861 58361994 ~ 58382911 (+) True LOC110532475
XM_021616447.2 mRNA downstream 159919 58656277 ~ 58665931 (+) False LOC110532490
XM_036988509.1 mRNA downstream 160774 58657132 ~ 58665931 (+) True LOC110532490
XM_021616450.2 mRNA downstream 171732 58668090 ~ 58670948 (+) False LOC110532492
XM_021616449.2 mRNA downstream 171826 58668184 ~ 58670948 (+) False LOC110532492
XM_021616448.2 mRNA downstream 174996 58671354 ~ 58674299 (+) True LOC110532491
TU936293 other upstream 66202 58388671 ~ 58390570 (+) True LOC110532478
TU936255 other upstream 206465 58247114 ~ 58250307 (+) True G823459
TU936266 other upstream 211788 58205263 ~ 58244984 (+) True G823467
TU936157 other upstream 427915 58028619 ~ 58028857 (+) True G823373
TU935738 other upstream 541238 57342401 ~ 57915534 (+) False LOC110532462
TU936410 other downstream 22861 58519219 ~ 58535643 (+) True G823580
TU937506 other downstream 171796 58668154 ~ 58671251 (+) False LOC110532492
TU937515 other downstream 187791 58684149 ~ 58684510 (+) True LOC110531219
TU937616 other downstream 358487 58854845 ~ 58856699 (+) True fkb1a
TU937747 other downstream 528842 59025200 ~ 59028143 (+) True ppdpfa

Expression Profile