RNA id: XR_005053305.1


Basic Information

Item Value
RNA id XR_005053305.1
length 1395
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC118966079
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 59158581 ~ 59161748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCAGCCCCATGATAGAGCCTATACTGTTAGACTGTCATGGGGCTGAGGTGCATGCTACTTTTTCCCATTTGTTTTCACAGGTGCAGCTGCAGATGTTTGTCTGTCAAGCTGATTTTATCACCTGGACTCCCCAGCAAAGTTTCATTTTCCGTGTCCCATGATATGAGGATTTTATCATTAAGGCAGTGGACACCATCAGCAGATTCTGTGCAAGGCACATTTACCCGTGGCTTGTTGGAACTTCAGCACAAGAGATGGACAAGGAGGTTCAGattACAGCCGGTAGCAACAAGAAGAAGCGCTACAATGTGCGTGGACCCAAGAAagacaggaagacacagtacacatgcatcaagtgcaagaaatacatttgcaacacacacGCAGCAAAACTCTGTTCCTCGTGTGGTGTAGACCAGCCTTAATTTGTTTTCAATGGGTCTCATTTATAatttccataaaatactgtatgtaaaatttgtccaatttgttcagttcaaagcaataaacatcaTAGTGATAAAAACCTTGTTTCATTTATATGTGTTCAAGATAAACATGATTATTCCACCCATGTCTTGATTATAAATTATTTTtaacaaaaaaatctaattttataaAACGAATAGCGCTTTTATTGACAAATGTGATCTAGCAGAGGTAAATGgcaaatattaaccatgtatgctgtctatacTGCCTGTAATTGATATAAGTCAACATCTAAGTATTCATTAAGTATTTTTATGTCAATTGAAAtggctgtatttttttttaaacaataatgttgtgggtccatcagacccgcaaccattgggtgaataacaaaaacatgaacaccacacaagggttaagtatattttaacaatTACATTTCCTTCCgatactaaagtatatttaaaaccaaatacttttactcaagtagtattttactgggtgactcacttttactacACACATCACATTAAAGTACTGACTGCAACTCACATTTTCTTGTGTGGTTACTTTGCCTAACGATTGAATGTTGCCTTAACTCTCCTTCCCTCAGACCAGCAGCATTTCAGGACAGGCATACAAACAGAAAGTGAGACGTCACCTTCCGTTCCTTGCCTCTGACCTCCAACCTTCAGCAGTCAAGAGCAGtTGACAGTTTACAAGGCCATGTCCTACAGCATTCTGCTCCCCATCACCCAGCCCCCCCATCCCAGAGCTTCTGAAGGACCATCAGCACAGGTCACAAGGGCAGACACTACCACCAAGCAGAAGATGAACAATAAGCGCTGGCCCCACTCACACTACATGGCTGCTCCTTCACAACCAGCAACTACAAGGTGCTAATATCACCCTCGCTGAATACACTATCCTCAGAAATAAAAGGAGTCAAACTGGAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU937810 lncRNA upstream 440 59158048 ~ 59158265 (+) True G824765
TU937809 lncRNA upstream 1035 59157408 ~ 59157670 (+) True G824764
TU937808 lncRNA upstream 1331 59156954 ~ 59157374 (+) True G824763
TU937806 lncRNA upstream 4126 59154286 ~ 59154579 (+) True G824761
TU937805 lncRNA upstream 7202 59150878 ~ 59151503 (+) True G824760
TU937814 lncRNA downstream 3843 59165591 ~ 59165885 (+) True G824769
TU937815 lncRNA downstream 4351 59166099 ~ 59166315 (+) True G824770
TU937816 lncRNA downstream 4591 59166339 ~ 59166543 (+) True G824771
TU937817 lncRNA downstream 5159 59166907 ~ 59167202 (+) True G824772
TU937833 lncRNA downstream 26742 59188490 ~ 59190181 (+) True LOC110531223
XM_021616488.2 mRNA upstream 21862 59132059 ~ 59136843 (+) False LOC110532516
XM_021616490.2 mRNA upstream 21862 59132059 ~ 59136843 (+) True LOC110532516
XM_021616487.2 mRNA upstream 31730 59109495 ~ 59126975 (+) False LOC110532515
XR_002474844.2 mRNA downstream 21299 59183047 ~ 59185601 (+) True LOC110532519
LOC110531223 mRNA downstream 26737 59188485 ~ 59190896 (+) False LOC110531223
XM_021616512.2 mRNA downstream 161827 59323575 ~ 59336156 (+) True LOC110532529
XM_036988539.1 mRNA downstream 213226 59374974 ~ 59381316 (+) False LOC110532530
XM_021616513.2 mRNA downstream 215279 59377027 ~ 59382409 (+) False LOC110532530
TU937747 other upstream 130562 59025200 ~ 59028143 (+) True ppdpfa
TU937616 other upstream 302006 58854845 ~ 58856699 (+) True fkb1a
TU937515 other upstream 474195 58684149 ~ 58684510 (+) True LOC110531219
TU937506 other upstream 487454 58668154 ~ 58671251 (+) False LOC110532492
TU936410 other upstream 623062 58519219 ~ 58535643 (+) True G823580
TU937938 other downstream 215358 59377106 ~ 59382411 (+) True LOC110532530
TU937994 other downstream 252399 59414147 ~ 59415013 (+) True G824936
TU938660 other downstream 436281 59598029 ~ 59598970 (+) True G825484
TU938963 other downstream 848261 60010009 ~ 60010425 (+) True G825749
TU939835 other downstream 1284282 60446030 ~ 60446534 (+) True G826505

Expression Profile