RNA id: TU937938


Basic Information

Item Value
RNA id TU937938
length 1931
RNA type TUCP
GC content 0.42
exon number 4
gene id LOC110532530
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 59374974 ~ 59382411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCCCGCTACTAAGCGACAAGATGGCGGTCGCCGCCGGATCAGGCGTTAAGGTTCCTCGTAACTTCCGGCTGCTTGAAGAGCTGGAAGAAGGCCAGAAAGGTGTGGGGGATGGGACAGTGAGCTGGGGCTTGGAAGATGATGAGGACATGACCTTAACAAGATGGAGAGGGATGATCATTGGCCCTCCTAGGACAATCTATGAAAATAGGATGTACAGTCTGAAGGTTGAATGTGGGCCCAGATATCCAGAGGCACCACCATTTGTCAGATTTGTAACTAAGATAAACTTGAATGGTGTGCACAACTCCAATGGTGTGGTTGACACACGAGCAGTGTCTGCACTGGCCAAGTGGCAGAACTCCTACAGCATCCGTGTGGTCCTGCAGGAGCTCAGGCGGCTCATGATGTGCAAGGAGAACATGAAGCTCCCCCAGCCACCAGAGGGCCAGATCTACACCAACTGAGCCCATGCTactactctccttctccttttccctcttttGTTTGCGTTCATCCTTTCATCCCATCCACCACCTCCCTTCTTATTTTAATTAATTTGCCAGCCAACACTCAAGCGCACACACAGGGACGTACGTGTGGCCGAACACACGAATGCAGACACCCACAAACATGCAATCACTTCTACATGCGCCATTCTCAGGCCCTGGCCCCTCCCCTTTCCATCACTGGAGCTCTGGTTGGACTAGAGAAGACTAGGTAGGCAGTCATCGGTCCAGCCCTGATCATTTGAATACTGTACATCATACTAATCTTTTTTTATTATTTGTTATAAATGCAGATTGTACAATAACATAAATAATCTTATTGAGTGTACATGTTGTGTGCTGCCTTTTTGTAATAGAGAGGACCCTCCAGCGATTATGCAAGTATTTGTGGATTTTGTTCAGTGCAAGATATAAATTAGATAAGAAAAACGTATCAGGTTCTAAACATAAAGTTCAACCAGTCAATTTACCTCCCCATTGATTTAGAGAGCTTGACCCAAGAAATATGTTAAGATATTGCTtgggtgttttttgggggggctttATGCATGTGTAACTTGTATAGCAATTTATTTACGGGCTCCACTGGAAATGCATGTGACTGCAGCAGCTTATAGCAAGATCCCTGAAGTAGTATGCCCTTCAAGCTGTCACTTTAGTCAACACACACCTGGCCATGACAGAGACAACCACTGATATTTAGCGTCCTAtataattatttatatatttttttaagataCCGGAAATGTTTAGTTCATAAGTGTCATTGGGTGTAAAACATAATACAATAATAACATATGTCATCTGAAAGGATTCACACGCCAGAACCTGCAACCATTTAAGCTAACAACCCTTGAATGGAGAATTTGAATTGGCTACCTCTTTTGGTCCTTAGTTGGAGAGTAGAATTGACCAATAGTCATGTCTTTTTATGGGTTTTTTTCTTCCCCCTTTCCTATCATAATTATTGCATCATGCATTCACACTTATGTATAGTGTCTATATTCCAATGGTTCTCACCCCCTGCAGGCATTACCCATGTTTGTTTCAGAATGCAATGTCATAGAGTTTGCCATTCATACACTGTCAGTATGGGTAATGGAACTACATTGATTGTACTTTTACACTATCTTGGTCTGTACAGGatcttttgtatagtgtttgtctGTTCCCCTTTAGTGATCTTACCAAACATGCAGTAAATATCATAGGGTGACCAGTCTTCTGACTATTTGTTTATCACAAGCCAGGTTTCCATCAAATTGGCGAGAGATTTTCATGCTAATATTCTACAATCCACGAAGACAATGTTCACAGCAAAGGGACTTGTTGCTGATAAAAGTCAGTGGGTGATGatgtagtgcacacaaaatgtactttttcgcttaagttttcatgtaccgaataaaaatctaaagttcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU937910 lncRNA upstream 74929 59301881 ~ 59302177 (+) True G824858
TU937872 lncRNA upstream 77157 59237340 ~ 59299949 (+) True G824822
TU937845 lncRNA upstream 112321 59263049 ~ 59264785 (+) True G824800
TU937859 lncRNA upstream 151780 59224922 ~ 59225326 (+) True G824814
TU937857 lncRNA upstream 155104 59221635 ~ 59222002 (+) True G824812
TU937979 lncRNA downstream 687 59383098 ~ 59383402 (+) True G824921
TU937992 lncRNA downstream 30541 59412952 ~ 59413227 (+) True G824934
TU938006 lncRNA downstream 52824 59435235 ~ 59437158 (+) True LOC110532532
TU938027 lncRNA downstream 77939 59460350 ~ 59460837 (+) True G824967
TU938029 lncRNA downstream 81967 59464378 ~ 59468671 (+) False LOC110532533
XM_021616512.2 mRNA upstream 40950 59323575 ~ 59336156 (+) True LOC110532529
LOC110531223 mRNA upstream 186210 59188485 ~ 59190896 (+) False LOC110531223
XR_002474844.2 mRNA upstream 191505 59183047 ~ 59185601 (+) True LOC110532519
XR_005053305.1 mRNA upstream 215358 59158705 ~ 59161748 (+) False LOC118966079
XM_021616488.2 mRNA upstream 240263 59132059 ~ 59136843 (+) False LOC110532516
XM_021616517.2 mRNA downstream 4453 59386864 ~ 59393869 (+) False LOC110532531
XM_036988541.1 mRNA downstream 5223 59387634 ~ 59393869 (+) True LOC110532531
XM_021616518.2 mRNA downstream 46107 59428518 ~ 59437957 (+) False LOC110532532
XR_005053307.1 mRNA downstream 81826 59464237 ~ 59468766 (+) False LOC110532533
XR_005053309.1 mRNA downstream 81826 59464237 ~ 59468766 (+) False LOC110532533
TU937803 other upstream 216910 59158581 ~ 59160196 (+) False LOC118966079
TU937747 other upstream 348963 59025200 ~ 59028143 (+) True ppdpfa
TU937616 other upstream 520407 58854845 ~ 58856699 (+) True fkb1a
TU937515 other upstream 692596 58684149 ~ 58684510 (+) True LOC110531219
TU937506 other upstream 705855 58668154 ~ 58671251 (+) False LOC110532492
TU937994 other downstream 31736 59414147 ~ 59415013 (+) True G824936
TU938660 other downstream 215618 59598029 ~ 59598970 (+) True G825484
TU938963 other downstream 627598 60010009 ~ 60010425 (+) True G825749
TU939835 other downstream 1063619 60446030 ~ 60446534 (+) True G826505
TU939988 other downstream 1180669 60563080 ~ 60563397 (+) True G826653

Expression Profile