RNA id: XM_021616523.2


Basic Information

Item Value
RNA id XM_021616523.2
length 1780
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110532538
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 59553907 ~ 59558082 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTGCACTGATGCTGTCAGCCGTCCAGTGTCCACAGATGAGAGGAACGCACGCATGAGTAGGATGTCCTCAACACAgcaaagacagagggaacagatATAACTCCTCCACCTAGAATACCATCAGTAGCGGTCTTATTTCTTCTCATCACAGATTGTAATTCTGACAAGGATAAGCCTCATGTCCGGTGCAGGGCAGGAAATGGTCTGATTCAAACACATCTCACAGGAGCTTCCTGTTTCCTCAGCACTTACATTCTAACAACATGAAGTATTCGTCACATTCTTTCATTGAATTAATGAAGCAAAGTCCTGTCCCAATGGAATACTGACAATATACTGGCTTAGTGTTGACTGTTGACGTATGCTCCCAAATGAGATTAAACCAGGAAAACAACACGGTTACACGGATGGCCTTAATTGCTAAATAAAAGCACAGTAATTATCCAGACCTGTTGAACGGCTGCTCCAAGATGGCAGACCCCAGCTCACTCTTGGTCACTGATGGGGCAGTGCTGAGCCAGGCTGAAGTTGATCAATATATCCTCTCTGGCTTGGCTGAAGTGGATGCATGTGAGTTGGGGTTCACAAGGAAGTATGACCTCATCCCATCCATCGTCTGCTCAGTATGCCTTTTGTTAGGCCTAATCTACTGCTTTTTTGGATACCGCTGCTTTAAGATGGTCATGTTCCTGTCAGGCTTCATGTTTGGATCTGCGCTAGTCTGCCTGTTGTACCTTAAGGAGCCTGTGCTGGATACCCAGTTGACTATGGAGACCAAAGCAGGTATCCTCCTGGGAGTGTCTGTACTCTGTGCCCTGGTAACTATGCTGGTACAGACTGTGGGGCTCATCATTACTGGCCTAGAGCTGGGGTTTCTGCTTACCCTTGCCAACCTACTGGTTGTCAGACAGTTTTACAGCCTTACCCCACTATGGGCGCCTCTCGGTGCACTCCTAGCCATGAGCACCTTTTGTGCCACTCTCACACTGCAGTGGCAGAAACTATTCACTGTGCTCGCCACGGCTGCAGTCGGAGCCGCTGTGGTGATGGCATGCGTGGACTACTTTGTAGAGACGTCTCTGCTGGCTGGCCATGCGTACGACATCCTGTCTCAGGTTCCCCCTCGGCCCCTCTGCTGGTACAGCTGGGTTATAACAGGCGTGTTTCCTCTATTTAGTCTGATGGGGGTAATGGTGCAATGGATGCTCACTGCCAAAGGACTGTCACACACAGAAGTACCTGTCAGTGGACGACAAAGACAGGTCCAACTGATGCGAATCAGACAGAGAGATGCCCAGAGACGACCCCAGCTGGGCACTTACCGCCATCGCAAGCCTCCAATTCTAAAGCGTTATGCTGGAGACGTCCTGGCCCCAAGTTACATCCAGAGCCTTCGTGACCGCCAGATGGGTACAGGCTCCTCTAGCAGCAGCATCATCAGCAACAGCACAGTCAACCACACCATGATAGACTTCGACTTTGAGACAGGCTTCATGGTTCCCCTGAATGCCTCCTCCCTAGTCTACAGGGTCTGAGGGACACCAAATAGTAGGCATCACCTCCCAGTTCCACTAAGACGCCCAACACCTCTCTCCAGCAGACAATTCATACACTGTTGTAAAAAGAAAAACAGACTGATTCTTGAGACAAGAGATTCAGCCAACTAATTCAccttgttgttttgtttattatTCTGTCTTTCTAAAGGTATCTGACAGTCAATCGTAATATAACCATCGATCATTcctcaaataaataaaattgcTTTATTTTGGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU938642 lncRNA upstream 16512 59536779 ~ 59537395 (+) True G825467
TU938643 lncRNA upstream 21278 59532405 ~ 59532629 (+) True LOC110532537
TU938641 lncRNA upstream 23278 59530199 ~ 59530629 (+) True G825466
TU938635 lncRNA upstream 26417 59527246 ~ 59527490 (+) True G825460
TU938008 lncRNA upstream 61854 59488041 ~ 59492053 (+) True LOC118966188
TU938662 lncRNA downstream 23027 59581109 ~ 59595956 (+) False LOC110532540
TU938663 lncRNA downstream 23027 59581109 ~ 59593073 (+) True LOC110532540
TU938685 lncRNA downstream 83013 59641095 ~ 59641409 (+) True G825506
TU938692 lncRNA downstream 98496 59656578 ~ 59656791 (+) True G825513
TU938705 lncRNA downstream 117613 59675695 ~ 59676002 (+) True G825526
XM_021616522.2 mRNA upstream 18075 59531743 ~ 59535832 (+) False LOC110532537
XM_036988543.1 mRNA upstream 20492 59531356 ~ 59533415 (+) False LOC110532537
XM_021616521.2 mRNA upstream 33536 59506303 ~ 59520371 (+) False LOC110532535
XM_021616520.2 mRNA upstream 33536 59506304 ~ 59520371 (+) True LOC110532535
XM_036989285.1 mRNA upstream 61907 59488043 ~ 59492000 (+) False LOC118966188
XR_002474853.2 mRNA downstream 22982 59581064 ~ 59595764 (+) False LOC110532540
XR_002474851.2 mRNA downstream 23041 59581123 ~ 59595764 (+) False LOC110532540
XR_005053310.1 mRNA downstream 23041 59581123 ~ 59595764 (+) False LOC110532540
XM_036988545.1 mRNA downstream 44864 59602946 ~ 59635003 (+) False LOC110532541
XM_036988546.1 mRNA downstream 44864 59602946 ~ 59635003 (+) True LOC110532541
TU937994 other upstream 138894 59414147 ~ 59415013 (+) True G824936
TU937938 other upstream 171496 59377106 ~ 59382411 (+) True LOC110532530
TU937803 other upstream 393711 59158581 ~ 59160196 (+) False LOC118966079
TU937747 other upstream 525764 59025200 ~ 59028143 (+) True ppdpfa
TU937616 other upstream 697208 58854845 ~ 58856699 (+) True fkb1a
TU938660 other downstream 39947 59598029 ~ 59598970 (+) True G825484
TU938963 other downstream 451927 60010009 ~ 60010425 (+) True G825749
TU939835 other downstream 887948 60446030 ~ 60446534 (+) True G826505
TU939988 other downstream 1004998 60563080 ~ 60563397 (+) True G826653
TU940086 other downstream 1103287 60661369 ~ 60661906 (+) True G826751

Expression Profile