RNA id: XM_036988569.1


Basic Information

Item Value
RNA id XM_036988569.1
length 3076
RNA type mRNA
GC content 0.41
exon number 12
gene id LOC118966083
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 61214553 ~ 61237917 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCAGcccagtaggtggcggcatgcacttAAACGATTGTCGATTGTTTGCGGACCGCCATGATAGCATAGAAGAAGAAGCCAGAACAGTGAGTTAGAATACATATTCGACGGAGCAGCTTTTTGAAGAAAGTGGACAGACCATTTGAACAATAAGCGTGATTACGGCAAGTGGATATTTAGAGAAATTCGTCTACGTAGGTGGCGATCTGAAAAAAACTTTGCAGTACAAGCAAACCAACCAATCCAGGAAATTGTGTGCTGCTGCTTGTTACAGGAAAATAATGTCATGCAGCCCTCAAACATCTGTTGGCCCTTGACGATATGGATGGTCCAGCTGGCCTTGATTGTTCTCACTGTCCAAGCTAAAAACTGTACCAAACCCATAGGAGGGCCAAACATGGTTTTGTCAGATGCCTTCATCACGCAAGAGACATTTGTAGATGGCGCAAAAGTCACTTTTCAGTGTGCAATTGGATATGCCAGTACAGGACGATCTACGCCAGTCACCTGTACTGCTGGCGTGTGGAGTGAAGTGAAACTGAAATGCGAAAGGAAGTCGTGTGGCAGCCCAGGAGAAGTGATGAACGGCCAGTTTAATCTCTCTGAGGGGATCTTGTTTGGAGACCAGGTAGTTGCTACCTGTAACACTGGCTATGTGCTTGTGGGCAGCGGTGTAAGGACCTGTATGGCTGGAGGCTGGGATGGCAGAGTTCCTGTATGTGAAGTGGTGAAGTGTGGAAAGCCCCCAAACATTGTCAACGGTGGGCCTGTTGTCCCACCTGATGATACGTATGACTATGGAAGTGTAGTGCAATATGACTGTGAGAAGGATTACACTCTGGTTGGAACTAAATACATAACCTGCAGTGAGAATGGAGAATTCCAGCCAGCTCCACCGGAGTGTAAAATGGTGTCATGTCTTCCTCCTGTTGTTGTGAATGGTGTTCGGATTGACGGCCGTCCCCCCTATACGTACATGTCTTTTGTGACGTATAGGTGTAATGCTGGATATGAGATGGAGGGAAAAGCCAGTCTGACCTGTGACATAGAAGGCTGGTCAGCTCCTTACCCAACATGCAAAGCCCTTCTGACTACCACAAATCCCACTACTACAAAGAGAACCACAATCCAAGATCGTGTACCCCGTCCCACTGATCTAACCCCAAAGGCCAACAacaacactggggtaaTAGCAGGCTGTGTTGTAGGTGGACTTGCCATTATTTTTGGTGCAGTATTTGCAGTCTACAAAGTTAAACAAAGtgCCAAGTAGCCTAATTTGCCTTAGTCGTCTCCTGCTTCATTGAGAAAGGAGTCACAGAGAACTGGCTGCTGTGACGGTGCCTCCGAATCATCTACTACCCTCCCGCTTATGAATGCAGCAGCCCTTCCCAATTACCGGGAATGATTCATATCCTTTCAAAGGAAGCTTTATTATGTGATGATTAGGAACCTCATGACCAATGTATTGGTTCTCTCCCATTTGGAAGCTTGTGCATGAGGAGTGGCCTTACTTGATTAGTTAATAACTTCATGTTTCCAGTGTACTTCACATATCACTTTTTCTTAATCTAAGCCTGCCTCATCTCATTGCCTACATTCTGATGTTAAAAGTCCCACATATGTATGGAAGCTGCTCTTTAGAGCGACCATGCATCACAAAGCCAGTTTTACCCCCTCTGAAATAAGATTTAAGGAAATCATATCCTTtgcaatataaaaaaaaaactcacaaTATATCATGCAGTTTGACACCAATGTCTTGATAAAGTCGTACCACCAAAGGTCAACACTGGTTTCATAGACTAGGTTGCAGATGTGTTGAATGTAATCTGGAGTTCATGAACAACATCGGGTTCGGAGAATCAATGGGCGCTCACTAACTTTAGCTCTAATCATTGGCCTTGGTCTTTAATTGTGTAAATGTCAGGTTCATTTAAAAAGGTTGGTTTTATAAGGAGACCATGGAATTGATGTAGTATACTTATTTTGTAAAGTGTGCTAGTTCTTTGAGTGATCAAGGACTCATGATCCAGCTTTGGAATCTTTATTTGCACTTATAGCCTATTTATATTGTGTTGGAGTTATATTGTAGAGAAGACAATGAAATATTTATTTAAAAGAATGTAAATGCATCTAGTTTTAATGAAGTTAAATGGGGAAAATACATGCTTACAATGTTATGTCTATTTTCAGAGATGAGTCATGTTTATGTGACACATTTTCCCTCTAAACTGTTCTGGATTTGTGTGTAATTGGCTCACATTGCATGTGTAAGAATAACTGGGAACTGATTTAAGCAGATTGCGCAAATGTATTGGAGATCTGCTATTCAACCACTTGTAATATAACATCCACCATACCCAACAGTTTAATTACTGCCTTGAGTAAATGTACATAGTGACGTTAACCACAGTGCAAGACTATCTGGGTCATGGTGTTCTATAGGAAAGAAACCTGCAGCTCTCTGTAATATCAGGCTCAGCTTAGTGCATTTTGAATGCTCAATGTGCTCTGGATTCTTCACTATGCCTTGTAATGAAGAATATTTTGGAGTTTGATGTCTATTGTATAGCCTACAGTGACTTTGCTTTATTCTGATCAATGTACCCTACTAAGCAGAGCGGTGTTCAACATATCCAAACAAGACAACCCCACTTGCCATGTTTTCAAAATGGAATGAAAATACATGTTCCAGAATGTCGTCTTTCACTTGATCTTTGAAACCACTATTTCCAACAGAGTAATATGTATTCATGTGTTTTGAAGTATTCTGTAgtggctctattcaatctgtattgctGAAGCATTACAGATTGCACAATGTAAAGGTACTTTCTGATTGGTTGACATGCAGCGTTTACTGGGAATGCAGTCGCTGCTAAAGCTGGAACAGTATCTTTATTTTAATCACGCTTCCTATACGCTGTCTTTGGTGTCGGTGTGTCTGTAATCTGTTAAATTCAGTGTGGGACCACAACTGTTATGTTGTGGTTAGCCAGTTATGAAAAATATTTTTAGCACTTGTTTGTACATTAAGTTAATCAATTAAACAGCAATCATTTTAACATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU941167 lncRNA downstream 61646 61148983 ~ 61152907 (-) True G827705
TU941174 lncRNA downstream 119908 61093053 ~ 61094645 (-) True G827709
TU941164 lncRNA downstream 125490 61088781 ~ 61089063 (-) True G827702
TU941157 lncRNA downstream 133090 61080972 ~ 61081463 (-) True G827695
TU941153 lncRNA downstream 136591 61077752 ~ 61077962 (-) True G827692
TU941268 lncRNA upstream 94221 61332138 ~ 61347355 (-) True G827779
TU941279 lncRNA upstream 119839 61357756 ~ 61361697 (-) True G827785
TU941255 lncRNA upstream 124778 61362695 ~ 61366798 (-) False G827771
TU941259 lncRNA upstream 124778 61362695 ~ 61366798 (-) True G827771
TU941284 lncRNA upstream 138736 61376653 ~ 61378930 (-) True G827788
XR_002474859.2 mRNA downstream 8467 61203212 ~ 61206086 (-) True LOC110532573
XR_002474855.2 mRNA downstream 938781 60228462 ~ 60275772 (-) False LOC110532567
XR_005053312.1 mRNA downstream 938781 60228462 ~ 60275772 (-) False LOC110532567
XR_002474856.2 mRNA downstream 938781 60229514 ~ 60275772 (-) False LOC110532567
XM_021616572.2 mRNA downstream 938782 60228462 ~ 60275771 (-) False LOC110532567
XM_021616580.2 mRNA upstream 14777 61252694 ~ 61276082 (-) False LOC110532574
XM_021616579.2 mRNA upstream 14777 61252694 ~ 61276113 (-) False LOC110532574
XM_021616581.2 mRNA upstream 14777 61252694 ~ 61276113 (-) False LOC110532574
XM_021616583.2 mRNA upstream 14777 61252694 ~ 61276113 (-) False LOC110532574
XM_021616584.2 mRNA upstream 14777 61252694 ~ 61276113 (-) False LOC110532574
TU941127 other downstream 142188 61028372 ~ 61072365 (-) True G827668
TU939603 other downstream 938812 60251601 ~ 60275741 (-) True LOC110532567
TU939209 other downstream 1575659 59638346 ~ 59638894 (-) True G825961
TU938424 other downstream 1991072 59222543 ~ 59223481 (-) True LOC118966080
TU938079 other downstream 2546468 58664782 ~ 58668085 (-) False LOC110531218
TU941450 other upstream 449851 61687768 ~ 61703931 (-) False tmem269
TU941451 other upstream 449851 61687768 ~ 61717965 (-) False tmem269
TU941455 other upstream 449851 61687768 ~ 61717965 (-) True tmem269
TU943351 other upstream 1552671 62790588 ~ 62792496 (-) True G829644
TU944349 other upstream 2624931 63862848 ~ 63899304 (-) True LOC110532632

Expression Profile

XM_036988569.1 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 12.
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XM_036988569.1 Expression in each Bioproject

Bar chart with 21 bars.
XM_036988569.1 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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