RNA id: XM_021616614.2


Basic Information

Item Value
RNA id XM_021616614.2
length 4923
RNA type mRNA
GC content 0.50
exon number 18
gene id LOC110532591
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 62326990 ~ 62340784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAGTGTATCTACCACAAACACCAAGCAGAGGCGGTGATGTTTCTTCTGATCTTTTCAATTATTGTTGCTGTTTAGTCTAAAATGTAATCCTGAGATTATTTTTAGGAGACTACAATTTATCACGCGCTTGTTTTCAATCCTTACGGTAATGCTGAAGCGCTTCTGGTGCTTAGGTATACGGTTGATTTGTTATGGCTTGATGGATGGGTCTTTCCTGCTGTTTTTGTAGTCAGTTTGACATTTTCTATGTGCCTCTAAAATTATGTGATGTCGTGTGATATCCTCGTGTTGTTATTATGTCCCGGTTGATGTTTTGAGATCTCGAGGGGAGATCTGCCTGAAGTTCGCATTAGCTGGAATCTTAGCTCTTATCTGCCTACAACTAGCTAGCTATGAGGCTTGCTGTTTTGGGAAATCGATCGGACCCGCAAGACTAAACCAAACACAGACATGGCTTCCCAGCTCCaggttttctcctctccttcagtctcctcCAGCGCATACACTCGTACCAAGAAATTGAAAGTAGAGAACAGTGTGTGGGATGTGAGCGTCCAGGTGGGAGACAACAACTACACTTACTACCAGCAGCAGGGCCCCATCCAGGGAAATGGAAACACATCCTCCCCCTCTGCATCAAGTTTCAACCCAGCATACAACTCCTCCAACTCCAACCAGGGGTATCCATCAATGGGGGGAGGCTCCCGGGAGCAGACAGTCGTACGGGCGGCAGACAGCACAGGCAGTGCCCGAGGaccctcttcatcttcctcctcttctaccAGTCACCATGTCAAGGATGCTGCATCCTCCTCCCAGCCAGGGGACCTATACCACAAGCAGTACAGTAACAGCCTGAAGAGGAAAAGTGAGGAGGTGGACAGCAGTGACAGTGTTCAGATCCTGGAGGAGCTCTCTGCCCCTGTGCTCTCCAACCGCCCCGCCGCTGGTGGGGGGACCACCACAGCCCAGTCCATAGCACATTCCACCTCCACCACTAAGAGTAGTAACTCCCACAGTGAGGGAGACTACCAGCTAGTGCAGCATGAGATCCTGTGCTCTTTGTCTAACAGTTATGAGGTGCTGGAGTTCCTAGGGAGAGGTACATTTGGCCAGGTGGCTAAATGCTGGAAGCGTGGCACCAATGAAATCGTGGCCATCAAGATCTTGAAGAATCATCCTTCATATGCCCGGCAAGGTCAAATTGAGGTGAGTATCCTGAGCAGACTGAGCACAGAGAACGCAGACGAGTTCAACTTTGTGCGTTCCTACGAGTGTTTCCAACACAAGAACCACACCTGTCTCGTGTTTGAGATGTTGGAGCAGAATCTCTATGACTTTCTGAAGCACAGCAAGTTCAGCCCGCTGCTGCTCAAGTCCATCCGGCCTGTGCTGCAGCAGGTGGCCACGGCCCTGTTGAAGCTGAAGAGCCTGGGTCTAATCCATGCTGACCTGAAGCCTGAGAACATCATGCTGGTGGATCCTCTCAGACAGCCCTACAGGGTGAAGGTCATCGACTTCGGCTCCGCCAGCCACGTTTCTAAGGCAGTGTGTTCCACCTACCTACAGTCACGCTACTACCGGGCGCCAGAGATCATCCTGGGCCTTCCCTTCTGTGAAGCTATAGATATGTGGTCTCTGGGCTGCGTCATTGCTGAACTGTTCTTGGGTTGGCCTCTTTATCCTGGTGCCTCAGAGTATGATCAGATCCGGTACATCTCCCAGACCCAGGGCCTGCCTGCTGAATACCTCCTGAGTGAAGGCACCAAGTCCAGTCGCTTCTTTAACAGAGGCCCTGACTCCAGCTACCCCCTATGGAGGCTCAAGACACCTTCAGAGCACGAGGCGGAGCTGGGGATAAAGTCAAAGGAGGCTCGGAAATACATCTTCAACTGTCTGGATGATATGATGCAGGTGAACATGACTAGTCTGGCGGGGACTGACATCCAGGCAGAGAAGGCGGACCGGAGAGAGTTTATTGACCTGCTGAAGAAGATGCTAACGCTGGACGCAGACAAACGCATCACCCCCATGAAGACCCTCAACCACACCTTCGTCACCATGACCCACCTGCTGCACTTCCCTCACAGCTCACATGTGAAGTCGTGCTTCCAGAACATGGACATTTGCAAGCGAAGGGTCAACCCTTTCGAGAGTGGAAAGAATCTGTTTTCTAGCAGCAACACCCCCAGTGCAGCTACAAACCTCACTGTTACATTTAGCAGCCAGCACAACCAGGTGGCGTCAACCGGTGGCCAGTCCCTGTCCCTGAGCAGCAACGTCCCTCTGCTGAACTACCAGTCGGGACTGTATCAGCAGGCTACTATCAACATCCCAGGTCTCCACCAGCAAAGTGTCCCTCTGCAGACCAGACCCACCCAGCTGTGTGGCCAGGCAGAGCCTTTCCAGCAGACTCTCATAGTCTGCCCACCCACCATCCAGGGCCTCCAGTCATCCGGTAAACACTCTGGGTTCCCAGTAAGGATGGATAACTCTGTTCCCATGGCGCCCCAGAACCAGTCCACTCAGCCTCTGCATCTCCAGCCTGGAATGCTCACACAGCAATCCTGCAATCCATTGATGGTAGCCACCCTGCAAGCCCCTGTGGCAGGAATGGCCCCTCTGTATTCACTGCCCCTGGGCTGTGGGGCTGGAAGGCCTGGCCTACTGGAACAGAGCCCCACCATGCTGcaggGCTGGCCAGCAGGCACCCAGCAGATCCTCATCCCCTCCACGTGGCAGCAGATGCCAGGTATGTCCATCCAcaaccccagccaaacccagactcTGGTCCCTGACTCCCCCATGGGAGCCCCCCTCTCTGGGGGAGACAGCTCAGGACAACAGGCCTCACACTGGAGGGGTCGTCATGGCAGTCATTACCATGGCATCAAACAGCAGGACCATACACTGGGGCGTCATGCACCTGCGGCCCAGTTCCAAGCAAGATCTCAGCAGGGGAAAAGGTCTAAGGCTCGACATGCCGACAGTAGGGCCAGGCCTGTGTTGTCTCTGCAGACAGCCGCCCCTATGGTCCACAACACACCACTGCCTGCCTTGAGTGGTGATCCAATTATCATCTCTGATACTCCCAGCCCTGCTGTCAGCATTATCACTATCCATAGTGACACAGAGGACGAGGATGACGGGAAGTTCCCTGCTGCCAGCTCTGGTGCTAACCAGCGGGCCAACGTGATTAGCTGTGTGACAGTCCACGACTCGCATGACTCTGACTCGTCCACCAGCAGTCCCCTGAGCCCCAAGGGCCTGGCCAACAGCTCCTCCTCGTCCCAGACCTCCCACTCCTTCTCCAAGTCTCTAGCCATCATCCTGCCCTTAGTGAAGACCCAGTCTGGGGAGAGCAGAGTACAAAAAACAGATAAACCTGCTAATGTCTCTGGTAAATCCAAGAAGGGGACAGCTCAGCAGTCCAGCAGGGCAGGAAGGACCTCCAGCTCTGATCGCAACCAGAGTGCCACAACTAGCAGATCCCAACCACTCAACCTGAGTCAGCTCCAGGTACAGCAGTCTGTGATGTCATCATCACAAGACCGAACAGGAGGCAACAACAGCTCCTTGCCCCGTCAGACCACTtaccctcctcccatctcctccaacTCCTCTTACCGCCTGCACGAGGCTGCCTCCATCTTCACCTCTACCCCGAACCTGTACGCCTACCCTGCCTCTGCCGCCCTGGCCTCTGTCTCCCAGGCCGTGGACCAGCTCCATGCCGGCGGCTCTTCTCGACATGCCCGGCCCAATGGGCCCTACTCCTCCCTGGGGCTCCTACATGCCCAGGGACAGtaccaccaccagcagcagcTGGCGGCCCAGCCTTACCCCGTTCCCCGATCCAGCGCGGCAGCCTACCAGCTAAGCCAAAGGAAGCTCAGTCAGTACCCCTACCTGTGAAGAATAGAAGCTGCCTGAGACagaaccatagaaatataatctgtGGACAGATCAGCTCTCTAGCCCAGCGGAAGACCAAATGGAGACCAAGATTATAAAGGTGCCCAACTGCACAAGTATAGCACTGGGACAATGATTTGTCATGTTTTTTAAATGTGCAATTTATTAAGACCTTCTTTAAAATTTTAACAGCTTTGTTGGCAATTTCCTGATTTCAGAGACGGTTTTAACGTGGTAAATATGAGTTTTTTCCCTTTCGCTTTTTTCCCCGTTACTTAAATTAAGCACACTTATGTTAACAAAAAGTATTTAGACATTTCTTCTATGTAAAGCCAGTATTTCGTTTTTGAATATCTTTGTTTTTAGAATAATAAGCTTATAATAGCCTACCTGTCAAAAGCACTAACCATTTGTGTCCTTTATGCCATTATGACAATTTATTTCCATTGTTATTTTCATCATGTACTTCTGCTAATCAAATTGTATATTATAATGTTCCTTTTATTCATTTGCTTTTAGCATTTTTTTGTGTCTATACATTACAAATGACCCTGAACAGAGTTGGTCTCTGTTATAAATGTTTTGTGTTTATGTTTgttaaaaaatacagatgaaattTGTTGACAAAATCACCTTATCTGAAACTTCTGACATTGCCGTTTGCAAACATGAATCTTTTGTGTTTTTCTCCAGCCTGTCACTGAGGCGCTTGTCAAAGGCCCTTGAATTTGAAAGTGCTGCTCACATATTCCACACATCACATTAATAATCTCATCACCACTTTAAGCCTATTGATAGGCTCCTGTCAACCTTGAATTCATTTGGTGAATTGTGTTGAATCTGATGGTGATTCATGAGTATATAAATAGATGTTGGATATAGAGTTGATGGTTTTGGTGACATGATGGTCGTTCATACAATCATACTATTATAATGTGAAGTGCTACATAGAACAGACAGTACACCTTAATCATCATATAGGCAATAAAATGGTTTTTAAGATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU942012 lncRNA upstream 68405 62253724 ~ 62258585 (+) True G828449
TU941970 lncRNA upstream 110978 62215611 ~ 62216012 (+) True G828408
TU941798 lncRNA upstream 181871 62141530 ~ 62145119 (+) True G828254
TU941748 lncRNA upstream 260969 62065660 ~ 62066021 (+) True G828209
TU941744 lncRNA upstream 266286 62055958 ~ 62060704 (+) False G828206
TU941990 lncRNA downstream 5724 62346508 ~ 62373439 (+) True G828427
TU941989 lncRNA downstream 41234 62382018 ~ 62382657 (+) True LOC110532596
TU942187 lncRNA downstream 56007 62396791 ~ 62397015 (+) True G828598
TU942438 lncRNA downstream 229841 62570625 ~ 62570871 (+) True G828832
TU942444 lncRNA downstream 232395 62573179 ~ 62573993 (+) True G828838
XM_036988610.1 mRNA upstream 3307 62225784 ~ 62323683 (+) False LOC110532593
XM_036988611.1 mRNA upstream 3307 62225784 ~ 62323683 (+) True LOC110532593
XM_036988612.1 mRNA upstream 9275 62225784 ~ 62317715 (+) False LOC110532593
XM_036988606.1 mRNA upstream 120421 62196903 ~ 62206569 (+) False LOC110532589
XM_036988619.1 mRNA downstream 19017 62359801 ~ 62382580 (+) False LOC110532596
XM_036988618.1 mRNA downstream 19021 62359805 ~ 62382579 (+) False LOC110532596
XM_036986963.1 mRNA downstream 46061 62386845 ~ 62391585 (+) True LOC118965938
XM_021616634.2 mRNA downstream 238395 62579179 ~ 62606419 (+) False klhl21
XR_005053315.1 mRNA downstream 275178 62615962 ~ 62619538 (+) False LOC110532601
TU941829 other upstream 136384 62189182 ~ 62190606 (+) True G828274
TU940445 other upstream 1075752 61212461 ~ 61251238 (+) True G827039
TU940086 other upstream 1665084 60661369 ~ 60661906 (+) True G826751
TU939988 other upstream 1763593 60563080 ~ 60563397 (+) True G826653
TU939835 other upstream 1880456 60446030 ~ 60446534 (+) True G826505
TU942478 other downstream 282455 62623239 ~ 62627842 (+) True LOC110532602
TU943081 other downstream 1224794 63565578 ~ 63597768 (+) True LOC110532619
TU944593 other downstream 1973294 64314078 ~ 64315926 (+) False G830755
TU944595 other downstream 1973294 64314078 ~ 64316656 (+) True G830755
TU944792 other downstream 2324964 64665748 ~ 64666311 (+) True G830923

Expression Profile