RNA id: XM_036988633.1


Basic Information

Item Value
RNA id XM_036988633.1
length 5200
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110532612
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 63033474 ~ 63045519 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTGTCCCCGATTCGTTGAGCGCGCGCCTCACAATTCAACAGCTCCACATAGCGACTTGCAAACATTGAGTAAGAACAATATGACCGAAAATTGTAGCAAGGTGAACAAATTTGTCTAGCTGCTATTATTCATGAATTGGCTAGTTTAGCGACAGGATGTAACACGCAGTTTATTTCACTTAGATATATAATTTCGATTAATTGAACGTTTACCTGGAAAGCCTGAATTGGAATCTACCTACGAAGACGAATCACTGACAATCTTCCACATTGATATTCAGAAACGTCATCCAGTAACTCCTTACTTATAGAATACTTAAGTATATAGATCAATTGCACAACTTTTTAGGAAATGCCAACTCACCTGTTGCCATATGTGGAAAGTCCAGATGGACTTGGACAAGACATTCTAAATATTAGTAGTGGTGCTAGCATGCCAGGGTCTGGCTCCAGCATGACTCCTCACAGTGCCACCATCACTAACAAAGCCGAGGCTCAGCCCGAGGGAAGTCTGCTGGAAGTCCTGGACTGTGTGTTTTGTGACCAGACCTTCACACACCAAGATGACCTGGGCCCACACGTCCTGACCCAGCACCCCACAACACTGTTCGAAACGACAGTTCTGCGTGTGGAGGCAGAGTTCTTGATCCCAGGTGAGAGGGCCCGGTCCAAACCCAGGTTGCCATCTGTGAAGGAGGTGGTATTTAGCTGCGTTGTGTGTGATCAGGCCACAGAGGGTGCCAGTGAGCTGGAGAGCCACATGAGGACACACAAGGACTGTTTCACATTTCACTGTAACTTTTGTGGCCGGCGGTTCAAAGAACCCTGGTTTCTCAGGAACCATATGAGGTTCCATAAGGCTAAGGCCCAGCAGAACCTGGATGGTCCAGTTATTATCAATGAAGTCATCCAAGACCAAGTCCCAGAGCCCGTAATCACCCCTTACAAAATGTGCTTTACCTGTGGCTTCTTTTTTCCCGATAAACACCATTTGGTGGAACACAGCAAAGTACATAGTAAAGAATTAGAGGCTGATGAAAAcagagagaaggatagacaggAAGATCCCCTCAGTCAACAAGGTTTTTTACAGGTACTCAACCTTCGCCCCCTCTCTGAGGAAAGTAGTATACCAGAGAGATCTTCTAGGGGGATTGCCCAACTAGACCCTTTCAACACCTATCAGGCCTGGCAACTTGCCACCAAGGGAAAGATAGCAGTTTGTCCAAGTATGGCTAAAGATCTAGGCCTAATCCAAGACCACAGCTCTAACAACGAGGACTCTGGCTCAGATAAAGAACTGACAAACATCTGGTCAGAAGGCCAAGAAGGTGACAAGTGTGTTAAAGACAACTTGGGTAGAGAACTGAGATCCAGACAGACTGCTGGAGAGACCCCATCACCAGAACCTGATCAGAAGTCAAGTCGAAATGACAAGCCGACGCACTGTGAGGACTGTGGGAGGACATTCAGGACGTACCACCAGCTTGTTCTCCACTCCAGGGTGCacaagagggagaggggtgaggaggagagccCCACCGCCTTCATTGATGGCAAGCTCTCCAGAGCAGGGTCCCCCAAAGAAGAGGGGTCTGAAGAAGGGTCAGATGACGGAGCACCGGGAGATGCCTTATTTTCAGATAAAAGTGAAGATGGATTTGATCAAATGAAGGTGAAACATCTTGTGTCCTCCAGGGAGTGTAGTTACTGTGGCAAGACATTCCGTTCCAGCTATTACCTCAACATTCACCTCAGGACCCATACAGGTGAAAAACCatacaaatgtatatactgtGACTATGCTGCAGCCCAGAAAACCTCACTGAGATATCACTTAGATAGACGTCACAAGGACAAACCTTACACTGACATCCCCAATAAGCCTGTGATATCTGTGCCATCTCCCAGTGAGAGAGAATTTGCCAGAAACGGAGACGACAAACGGGTCCCCAACCGATCCAAACTGTGGCCAGCTCCCAATGTCAGGCCTACAACCAAACCTTGTGCCATTATAAAACCAGAGGATAGATTTAATAGCATCGGTGTCAAGATTGCCAGCCCACTTGCTCAAGTGAATGCTGAGTATGGGAAATTGATTTCTACGGCTGCTCACTCTTCTTCTGCACACATAAAATGCCCCGTACCTGTTAACCTGAAGATGGAAGGACAGGAGACAAAACACCCCGTACCTGTTAACCTGAAGATGGAAGGAAAGGAAATAAATGATGAGGGCTTCAGCGCACCCTTAAATTTGTCCTTAAAAGTTTCACTTTCCATCTCCGCCACCCTAATACCAAGGAATGTGTTGATTTCCAATGCCTGTTCGTCCTGTGCCTTCAGCACTATGTATCCAGAGGTCCTGCTCATACACAAGAAGCTGCTTCACAAGGAGAAGTCTGACATAACTAAGAAGAACAGAAGTCTAAAACTGAAGCGTTATACTGGCTGCCCCCCTGCCCTTGAGGGCAAAGATGTCACCCTGCTGCCTCTTGTAGATCGGAGACACCCTCGCCGGACCAAATCCCCAACCCCTCAGTCTCCTGGAAAACGTACAGGAAAGACTCACCCCTCCAACCCTCATGGGCCTAAACAGTCTCTCATCAATGAACCCCGGAAGGCGATGGGAGCCCTGGGCCTGGACAATCAGCGGTACAGGATGATGATGATGCCGCCTACCACCAGCCAGGGCCAATCCAGGTTTACAGAGCCAGCAGAACAATCCAACACCAATGGTAGAAAATATAGCAAACCTGTaatggagagacagaggcagagcccATCGGACAGCAGAGTGGCAAGCGGCTTAAGAAGCGGTCCTGTGAGGAGCGGTAGTGTTGTAATCTGGCCCTCAGATGCTGCCAGGCTATGCCTCTCCAGCCGGTTTGGTAGTCTTCCCCCAATGGACTTTGGTGGTGAACCTTCCAGTAAGAGGCAGAGATTCTCTGTGCTCCCCGGAAGGGAAACAGACACTGTTGATACTGGCTTTAGGATGGAGGACAGGTACAACAGACTGCTTCCCTCAGGAAGAGATGTAGCCTCTCCCTCTCACAGGCTGCAAGCCTATGCCCCAGTCAAAGCGTCCAACCCTCCAGCCTCTgcaagcagcagcagcatggagACTGACTGGAATATGATCAACATCCTCCGTTCCTACACCCCCAGTGACCTGGCCTCCCTCTACCATCCCACTGTGGCTAACCCCAGTCATGGAGTGCAGACAAACCCAAGAGGGAGTAGGCCATTACTCTACCCAGCTAGTATGCTACAGAGGAGAGCCTATTCCAGACCCATCAGTAATGAATGTAGTGGACCCACTGACGAAAGGGCTTAACTGTTCTAATGGTAGGCTATTGTTCTGGTTGACTTCACCAGCCATGTTGTAAGTAACTTTGTCTTAAGTTTTGTGTTGAGATAAATAGAATACATTTGATAGCCTTCCGTAGGTTTCAAATACACTGAGAAGTTCATGCTACAATCGTCTTTTGAGAGTTTACCTGGAGGAAAGGCCTGACCCATAAATGACCTACCCCCACTGATCTATACACATCCATCTAATATAACAGTTGAGGTAGTTGACAAATGACTGTTTGAATATCATATTGTTATTGTTGCACTAGATAAAACATGTATAAATGAGAAGTGTTAAGAGGAAGTTACCTTTTGTTTATTAATACGCTGGTCTGTCTAATATGACATACAGTCAGCAATCAAAGGACCATGTTTTTGTCAAAGCACTGATGTTGGGTAGGGTTTTATCTGACCTACAGCTTGAGTTCTTAGTTTACAAAACAAAAGCTGTATATTGACGTATCTTGCCTCAAACTCAATTTATAGACTGTTGACGCTCATAGTAGGCAGTTATTTTTGTGATGATATGAAGCTGCAGTAGCTATCATGTCTACTATTGAGCCAGTGCATATTTGAGTTGGGAGCAACATGTCTGTGCTTATAAGTAGTAGTTATTCACTGGATAAACATGATCAGAGCCTGAAGCCAGGGATTCCTGCTACTGGGTATTATGTGAAATGTACATAGAAAAGGCTGCTTGTTCTGTTCTGCCTATGGATTCCTCACAACCGACTATGCTGTAACAGTGGTAAAACATGGACCGAATATCTGAGGGATTCCAGTTTTTGTGCGCACAAATACTGTTCAGATGTTTCTTTTTTTAGATCGACTGTTTTTCCAAACGGTATTCAGGACTCTGTTCATGTTATGCAGGATCTTAAGATAGTCTTTTGCCTTAGGTTGGATTGTGTTAACTTGTCTGCCTGCTTTGAAGCTGTGGTCAACTACTTGTTGATTCTGTATATAAGTCAGGGAGAGCAGAGTGAAAGCCTTACTGCAGGAATAGCTCAACTGAAAAAACAATTGTCTCAGGTTTCAGAACTCAATTTGGGCTCTATGATTCTACTTCATTTATGCATTAACTGTTACAAATTAATGCACATGGTGTAGGAAGCGTTCTGAATTTTTCAAGCAATTTGGGCACACCAGACCtctgttatttcatattttgctATTATAATTTTTAAGGTGTTATTTATTTCTGTACATTTtttgttttctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatgtaaaaatatatcGCTCAAGAGTTGTATGACTATCACCATGAGTCAATGACATTTGGGGCATAGACGAGTAGTGTTATAATATTTGTTTGTGCTGTTTGAAAATGTCTACAGGTATCTTTCCAAGTCTTACTATAGGCCTACCACCTTCCTGTTTATGTAACCTTGAAACAACTTTTAGGACTTTTTTTTTTTCGTCACTGGAAATGGACTGTTTCAGACTTCTCCTTTCCTGCTTTCATAAGCAAATGGTTATTAAGTTATCATTTAAATCTAAGTTTGGTTTATGTATTAGCCTAGGTAATTATTGTGACGGATACTGGACTTAACCTGGTTAGTTGAATTTACTCCGATTtgtctgcctatgctgctctacAGTACTTTATACAGTGATTTCACCCAGTGTGGTTTACGTTTGCCTAATAAATGATAGCCATGTCAATACATGCATTCATTTTTTTCTTCAGTGTTCACTTTTCTATGTTGTGATCTCATTGTTTGGTCTTTTGACTTAGATCAAGTGTAATTGTTGTCTTGAGTAGAGGGATCGAATAAACATTCACACTCAGACCTTCAGTCTGCAGAAATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU942712 lncRNA upstream 48238 62985013 ~ 62985236 (+) True G829085
TU942709 lncRNA upstream 51746 62981331 ~ 62981728 (+) True G829082
TU942701 lncRNA upstream 59940 62973039 ~ 62973534 (+) True G829074
TU942638 lncRNA upstream 152378 62880551 ~ 62881096 (+) True G829013
TU942474 lncRNA upstream 428506 62601293 ~ 62604968 (+) True G828868
TU942753 lncRNA downstream 5653 63051172 ~ 63116057 (+) True G829118
TU942858 lncRNA downstream 166719 63212238 ~ 63242095 (+) True G829218
TU942899 lncRNA downstream 225953 63271472 ~ 63271743 (+) True G829257
TU942903 lncRNA downstream 232373 63277892 ~ 63278092 (+) True G829261
TU942909 lncRNA downstream 247904 63293423 ~ 63293630 (+) True G829267
XM_021616661.2 mRNA upstream 6801 63012368 ~ 63026673 (+) False LOC110532611
XM_021616668.2 mRNA downstream 314063 63359582 ~ 63363557 (+) True LOC110532614
XM_021616669.2 mRNA downstream 356892 63402411 ~ 63410632 (+) True sall4
XM_021616670.2 mRNA downstream 365685 63411204 ~ 63453087 (+) True LOC110532617
XM_021616674.2 mRNA downstream 415444 63460963 ~ 63513676 (+) False LOC110532618
XM_021616671.2 mRNA downstream 418990 63464509 ~ 63513676 (+) False LOC110532618
TU942478 other upstream 405632 62623239 ~ 62627842 (+) True LOC110532602
TU941829 other upstream 842868 62189182 ~ 62190606 (+) True G828274
TU940445 other upstream 1782236 61212461 ~ 61251238 (+) True G827039
TU940086 other upstream 2371568 60661369 ~ 60661906 (+) True G826751
TU939988 other upstream 2470077 60563080 ~ 60563397 (+) True G826653
TU943081 other downstream 520059 63565578 ~ 63597768 (+) True LOC110532619
TU944593 other downstream 1268559 64314078 ~ 64315926 (+) False G830755
TU944595 other downstream 1268559 64314078 ~ 64316656 (+) True G830755
TU944792 other downstream 1620229 64665748 ~ 64666311 (+) True G830923
TU945242 other downstream 1834188 64879707 ~ 64883543 (+) True G831299

Expression Profile