RNA id: XM_021616669.2


Basic Information

Item Value
RNA id XM_021616669.2
length 5408
RNA type mRNA
GC content 0.47
exon number 4
gene id sall4
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 63402411 ~ 63410632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCATTATTGATACTAATAATTACGTTGACATGCGCATTTCTACTTGAGGAGCTAATTTTACAACCCGAAGAATTTGTAAAGAAGGGAAGAAAATTGTGTTACTGTTTGTTCCCGATGTTTGCACCATGTCGAGGCGTAAGCAAGCTAAACCACAGCAAATTAATTCCGATGATCCCGGTTCGTCAGAAAAGGGGGTTCTACAAGATGGTCAAACTGAAGAGGTTGGAAATGAGGTGAAGAGGTTTCGAATGGACACAGCAAAGGTCTGCACCAAATGTGGTGCTGAATTTTTCAACGAGGTTGAATTTCTCGAACATCAGAATAATTGCACTAAAAGTCACGAGGCAGTCATTGTGAAAGATGGCGAGGGGAGAGAAGTACCAGCGGAGGTCTCACAAGGAGACTCCCCTGGTGACTTCCAGAATGACCACAGGGACTGCCAGCCCAGAAGTAATTGTCTATCAAAGTCCAAAGCAGAGTCTATGGAAAGGATGGATGACGAGGAAGAACCTAAAATAAATGGTGCGGAACAACCACCCAAACAAGACCAGGTAGAGATGTCTGACAGTCCCAGGCCTGAAATTAGTCACCACCAGAGCCAGACCTCATCCAAACTCCAAGATTCAAATGTCACCTTGGAGTCCATGCCTGGCACCAAAGTGGCCGTCACTCAGCATTCATCGAACGTTGGTTTGAACAACCGCAGGTCTGCACAGACATCCCAGGAGGCCTTGCAAGCCATCCCCATGATCCTGGAACAGCTGGTGGCTCTTCAACAGCAGCAGATCCAACAGATCCACCTGACTGAGCAGATCCGTATCCAGGTGGCCATGATGGCTCCACAGAGCCTCCACTCTGTCAATGGGGCAGCAGTTGACCCTCTTAAAGCCCTAGGAGCTCACCTCTCTCAGCAGCTCTCTGCTGCAGCAGCCCTGATCAGTAAGAGGACTAGCCGCCAGAGTCTCTCGATAGAGTCCCTCAAACAGGGCAAACTACCCCAGTCCAACAGCAACCCCACCTCACTGGCTGGAGGACTGGGGCCAATGCCCTCCAAAGCTGATATGTTGAAGGGGCTTCCAGACCTGGCCAACCGCCTACCAGTGTTACTGCCTCAATCACCAGGCTCCAAGGCCTTTCAAAGTCCCTTCACTGGCCTCTCGTTAGGGATGGATCACTCTAAGAAAGTAAAGAGCAAGATCCCAAACATGCCGGAGTCTAAAAACGGGTCTGGTTGCGACAGCATGTACAAGCACAAGTGTAAGTACTGTGGGAAAACCTTTGGGAACGACAGCGGGCTCCAGATCCATTTGCGCTCGCACACTGGAGAAAGACCATTTAAATGTAACATCTGCGGAAACCGCTTCACAACCAAAGGAAACCTTAAAGTGCATTTCCAGAGACACAAGGAGAAGTACCCTCACATCAGGATGAACCCACACCCTGTGCCAGAACACCTTGACAACATTCCCACCAGCAGCGGCATTCCGTATGGCATGTCAATGCCAATTGAAGAATCCAACATGGTGGACATGAAGCCAATGCTTGGCATCCCATCTCCAGGTTTCCACCCATCAGCACTGCAGGGGTTCAAGCCTTCGTTTGAGGGTTTCAAGAGCGACCCGTTCTCCCAAAGACCGGCATCATCAGGAAGTGACGGAGCATCAATTTCCTCAAACGCGTTCAATCACGAAATGGGCTCTGATCAGCACCACCAGGTATCTAACGAGCTAATGGGAGCGCTGCATCACATGAACGGCAAAGACCCTCCCGGCGACCATGAAGGCTCTGAAACGGCCAAATTACAGCAGATGGTGGATGGGCTGGAGAAGAGGACCAATGACCCAAACGAGTGCTACATCTGCCACAGAGTGCTCAGCTGCCAAAGCTCCCTGAAGATGCATTACCGTACACACACGGGTGAGCGGCCCTACAAGTGTAAGATCTGCGGCCGTGCCTTCtccaccaagggcaacctcaaagCTCATTACAGTGTCCATCGGGCCAACACGCCCCTCAAGATGCAACACTCCTGCCCCATCTGCCAGAAGAAGTTCACCAATGCTGTGGTTCTCCAGCAGCACATCCGCATGCACATGGGAGGCCAGATCCCCAACACCCCCATGCCAGAGACTCAGTTAGAGGCCTCTGAAGAAATGAACTCCCCTCTGCCCGACGAGAAGTCCATGGACTTCAACGGCTTTGAGAGCATGGAAGACCAATACACAGAGCTTGACTCTCAGGAGAAACCAAGCAAAACCTCAGATTCTCTCCCACCATCTGCGTCTGAGGAACCGCACCAACCCCATCAGGCCCCTCAATCCTCTGTGTTCTCCAGCATAGCGGCACTGGAGAACCACATGAAGAACCTCACCTCATCTCTCAACCTGCAGCACCAAAGCAGCACCGCTTCAGAGAGCAATGGAGTGCCCCCCAAAGAGTCCACCTCAGCCTCCGAGAGCCTCCGGGAGCAAGAGTACCAGAGCGGCCGCAGCCCCACCGTCTCAGACCCTGTCTCCTTCCACTCCTCATCCCCAGTCAACAGCCATGTGGGAAGCAGCAAGTCAAAGTCCCCCGAGTTAGCCTTCCCTGAGGATTACACTCGGAACAGGCCTAGACCAGACTCTGACAGCGGCTCTCAGGATGCCAGTGAGTCCAATGGGGCTCTGGACCTGACGGCACCCAGCTTCACCCCAAAAACCATAAAAGAAGAGCCTGGCCTGTACTTCACTAATGGAGAGTATGCTCCCAGCCATTTGCCTCCTTTCCTGAGGGTGCCCTCCAGTCTGGTCCAATTGGAGATGCAGATTCCCCCAGAGAGCTCCATGGGCATGAGCTCTCTATTTGGCTCCCAGATGCCTCAGGGAGCAGGAGGGCAGCCAAGGGATAGCTCAAGTGCTCCCCGTAGATCCAGCAAGCAGCACCTGTGTAACTCCTGTGGCAAAAACTTCTCCTCTGCCAGTGCCCTGCAGATTCATGAGAGGacccacactggagagaagcccttCGGCTGCACCGTCTGTGGCAGGGCCTTCACCACTAGAGGCAACCTCAAGGTCCATGTTACAACTCACATGTGGAACAGCTCTGTGAGGCGTGGCCAGCGCCTCTCTCTGGACAACCCCATGGCCCTGATGGCCATGAGCTCAGAGTCTGGCAACATAATGCCACCTCCCAAGGAACTGGATCCTCAGCCAATGAACTTCGACCAGTCTCTGTGGAACCAGTATGCTGCTGCTTTCACCAACGGCTTGTCCATGAAGACTAACGAGATCTCTGTGATCCAAAATGGTGGTATGCCTGGTAGCCTGGCTGGTGGTCCTCTGTTCCATTCGACTGGAGGCCTGATGGAAATGGATGGGTCCCACTCTGGCCTGCCTGCCACCATGGCAGAGATTGAGAAGAATGGCTCAGAGAGTGTGGCCAAATCTCAGTTCCCACATTTCATGGAGGAAGGGAAAATTGCAGTGAACTAGTTTTGAAATGGGAGAAGGCAGTTTTATCGGTATTGcctagttttttttgtttttttttcattgaTTGTGTGCAGATTTTTGAATGTTCATAGTAGCAATGTTGGCTAAAATTTGCCACTAGGTCCAGGTACAATAAACATGAGCTATTCCAACACTTTTAGGAGATAATCCTTAACCCTTGCTGAAGATTTCTGGTTTTTGCAAAGCCTATTTGAAACTCTCAGTAAATTAAACGATGCAGCTCTTCACTAACCTTTCATTTGAACAATTCATCCCTTAACTGTTGTATTTAGTTGAACTAGATATAACTACTATAGTTGTATTTACTGTTTATTTTTTCTCAATATATGCAGGTATTTCTGTGCGTGACCTTTTTTAGTTTTGTATCCAGAAGTTGAATGTCTGGCTTACCTGAAACTGCTTTGATTCAGAATGTCTCCCTCCCCGATGGAAGAACCTGTACTTTGAATGATTTTGTCTAGTGTTAGAAAATCTTCAGTTTATGACTGTGTACACCATTGTTTTAGTGCCGATAAACAAGGAGTTATTCTGATTCCTCTGCACAGTACATAACTATTTGGCACTCCTATTGTGTGCAATACATTTTAGGAAGTTTGTGATGGCCAACAATTTATCCCGATGTTTGAGGGAATCTTTTGGAGATGCTCTGAGGTGGTCTACTGAGAGTTCTGTCAGGTGTCATGTACTTTTGTTTGATCCAGATAGGCTTACTGATTTGCTCAGTTGTCCATTTTGGAGGTTAATACTTTTTTCAGATACGTTACATATGTTGAGACAGTCATTTCTTTGCCTTTCTCTCTAAAACTGAAAAACCTCATGCCAAGTGCCTAGCTAGAATTGGAATTGTTGCTCTAttgtcttattttttttttaagcaccACAAGATTGTAATGGttacttttgactgatactgtttGTCCATGTAGCATATTGTGCTTTTTTTCCCCACACTCATATTTACAAAGATCTGTTCATTATTGTTTAATTTTTGCTTCCATTAACCTTTGCCGACCAGCAGAGCTTCTGCGTCTTTCGGTGGGTTGTTTTCTGAAGGATATGGGTGTGTTTTAAATGACACggtattccctagtgcactacttttgccctgGCTGAAGGTAGTGCACCATATGTGTATATGATGCAATTTGGGGGGCAACCATATAAAGTAGAATTCTCTCAATCATACCTGCACTTTAAATTTCTTCACGTTTTGTTAAGCTTATAATTTCGATGGCTACATTTCAAAACCATCCAGCTTGACTTTGTTTACCTTGGTGGTCATATTAGAGCGGGCACATCACTGATTTGTCATTTCTTACTTTGAGGACTTGGAAATGTTGACTTCAGAATTTGACTCAATATTCCACTCAATTGCCAACCTTTTTAAGTGACATATTTCAATACTTCTCTCCATTGATTGATGAACGTGCAAATCTACTATACATTATTTTATCAACCGTTGAATCTTAAACTTTTTGTTAATTTATATCACGTCATGTCAGAGCGTTTGGGGGTGACTCTCTACCTCATTTAGATATTTGTTTTTCCTCCACCTACCTTCAAAGGTATATTCGCTCTGATACATTCTGGGTAAGCAAAGATATGCTTTCATTCCTCATCTACTGAGTTGTAATGAATGTATCACTGGAATCTTTGCACAACTCTGAATGCGCAGATGAACTCTAGAATACTTTTGTACATTCCCCATTAAAATGCATTTACCAAGTTGTGcctttgtttaaaaaaatctaatcatGTCATATCTGCTTTGAGGTTGTCTCTACAATTGAAGAAACGTTGAGCCTGTTTAGGCTGGTTTACAATGTAAATGTCTTATGTCCTTTCAGTTTCCTTGTCACCTAAATGTTACTTTCTGGtcttgtaaaaataaaaatcaggGTGACTTTTCCAA

Function

GO: NA

KEGG:

id description
K19871 SALL; sal-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU942909 lncRNA upstream 108781 63293423 ~ 63293630 (+) True G829267
TU942903 lncRNA upstream 124319 63277892 ~ 63278092 (+) True G829261
TU942899 lncRNA upstream 130668 63271472 ~ 63271743 (+) True G829257
TU942858 lncRNA upstream 160316 63212238 ~ 63242095 (+) True G829218
TU942753 lncRNA upstream 286354 63051172 ~ 63116057 (+) True G829118
TU942998 lncRNA downstream 43200 63453832 ~ 63454040 (+) True G829347
TU943002 lncRNA downstream 46914 63457546 ~ 63457790 (+) True G829351
TU943202 lncRNA downstream 358485 63769117 ~ 63771336 (+) False G829530
TU943204 lncRNA downstream 358485 63769117 ~ 63770736 (+) False G829530
TU943205 lncRNA downstream 358485 63769117 ~ 63770736 (+) True G829530
XM_021616668.2 mRNA upstream 38854 63359582 ~ 63363557 (+) True LOC110532614
XM_021616666.2 mRNA upstream 356892 63033474 ~ 63045519 (+) False LOC110532612
XM_036988632.1 mRNA upstream 356892 63033474 ~ 63045519 (+) False LOC110532612
XM_036988633.1 mRNA upstream 356892 63033474 ~ 63045519 (+) False LOC110532612
XM_036988634.1 mRNA upstream 356892 63033474 ~ 63045519 (+) True LOC110532612
XM_021616670.2 mRNA downstream 572 63411204 ~ 63453087 (+) True LOC110532617
XM_021616674.2 mRNA downstream 50331 63460963 ~ 63513676 (+) False LOC110532618
XM_021616671.2 mRNA downstream 53877 63464509 ~ 63513676 (+) False LOC110532618
XM_021616672.2 mRNA downstream 53877 63464509 ~ 63513676 (+) False LOC110532618
XM_021616673.2 mRNA downstream 53879 63464511 ~ 63513676 (+) True LOC110532618
TU942478 other upstream 774569 62623239 ~ 62627842 (+) True LOC110532602
TU941829 other upstream 1211805 62189182 ~ 62190606 (+) True G828274
TU940445 other upstream 2151173 61212461 ~ 61251238 (+) True G827039
TU940086 other upstream 2740505 60661369 ~ 60661906 (+) True G826751
TU939988 other upstream 2839014 60563080 ~ 60563397 (+) True G826653
TU943081 other downstream 154946 63565578 ~ 63597768 (+) True LOC110532619
TU944593 other downstream 903446 64314078 ~ 64315926 (+) False G830755
TU944595 other downstream 903446 64314078 ~ 64316656 (+) True G830755
TU944792 other downstream 1255116 64665748 ~ 64666311 (+) True G830923
TU945242 other downstream 1469075 64879707 ~ 64883543 (+) True G831299

Expression Profile