RNA id: XM_021616719.2


Basic Information

Item Value
RNA id XM_021616719.2
length 5379
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC110532646
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 64099643 ~ 64110913 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGGTGATTATTCCGCGACTGTAAAAGCGACCAGACTACACCACACCTGCAATAATCCAAAACAGTCCCCAGACGAGGCGATATTCTGCATCCCTCGTCCAAACCAGGAATATGTTATAGATTAACTCACCCTTGTCTGCTGATTGTAGGCCCTTCGCATTTACTTTTCTGTCAGGCCATGGATACCAGAGAGGTTTCGTTTATTTGCCACAGATATTTAGAAATTATGTTTAGGGACACATGGCACATTTACGCCATCCACACCATTGACGTCAGTTCCTGTGACGTACCACGAGTCTAAAAAATTGTCCTTCTCAGTAATGGCGGCTTCGTTCCCTTCTCCTTCTGGAACAAACAACAAATGGTACTTCACCCGAGAACAGATCGAGAATAGCCCATCTCGTCGTGTGGGACTTGATCCAGACAAGGAATTATCCTACAGACAGCAAGCCGCGAACCTTCTACAGGACATGGGACAGCGACTCAATGTGTCCCAGCTAACAATTAATACTGCTATTGTGTATATGCACCGATTCTACATGATCCAGTCCTTCACCAGGTTCCACAGAAATGTCATAGCTCCAGCGACACTGTTCCTGGCTGCAAAGGTTGAGGAACAGCCCCGCAAGTTGGAGCATGTTATCAAGGTGACCCATGCATGCCTCAACCCTCAGGACCCTTCACCAGACGTCCGCAGTGATGCTTACCTGCAACAAGCCCAAGACCTGGTCATTCTTGAGAGCATTATACTCCAGACCCTGGCTTTTGAAATCACCATTGACCACCCACATACTCATGTTGTCAAGTGCACCCAGCTGGTCAGAGCGAGTAAGGATTTGGCCCAGACCTCatacttcatggctaccaacagCCTACACCTGACCACATTCTGCCTGCAGTACAGCCCACCCATAGTGGCCTGTGTCTGCATCCACCTGGCTTGCAAGTGGTCCAACTGGGAGATCCCTGTCTCCACAGACGGCAAGCACTGGTGGGAGTATGTGGACAATACTGTCACCCTTGAGCTGCTGGATGAACTCACTCACGACTTCCTACAGATCTTGGAGAAGACACCAAGCCGATTAAAACGCATTCGCAACTGGAAAGCGGCAGGTCAGACAGTGAAGGGAGGGAAGTCTAAGGTGCCAGAGGACGGGGACCAGACAGATTGTATGATGAGCATGATCTCCATGTCGTCCTCTGAGACCACGCTGGCCAGCCTCTCCAACCCTTCCTCTTCATCCATGGCTCCCATACTACTGGAGCTCAAGTCGACCCTGGGCAGTGGCTCCGACCAGCCCAACCACGTCGAGCTGCACGCCCCAGCCAAGGTGTCACTGAGTGAGTACCGGGCCAAGCACGCTGATGTCCTGGCTGCTCAGAAGAGGAAGCTGGAGAACATGGAGGCCAGCGTGAAGAGGGAGTATGCCTCGGCAGCCCAAGCTCTGATAGGCCAACATCAGAGGAAGGAGAAGTACAACCGTGATCAGCTGCAGTCCAGCTCCCACCATTCCAGCTTAGCCTCCTCTGACCTCAGCAGCCCCTCGCCCATCATCCTCAAGATCCCCCTGGAAAAGGAGAGGGGCGAGCGCAGCTCCCTGAAGATGCGCCTCCCTCTGGggactgggggaggaggggggcacAGTGGAGGAGGGAACAGAGGAGCCGGAGGAGAACAGGACATCAAAGTGAGAATCCGGGTGCCTGAGAAAGTACGCAGTGCAGGctcgggagaggaggggggcaagAGTAGGGAGGGCAAGCATCGAGATCgctcccaccaccaccatcaccaccaccaccatcattcatCGTCGTCTTTGAGCGGTGCTTCCGTCTCTTCGTCCTCGTCACATAAACACTCAGCCAGTGCTGCTGGAGCTGTAGGAGGAAGTGGTAGCAAAAAGACCCCCAGTGACTCATCTAGAATGAGCTCCTCCTCTGCTTCTCGAAAGAGGACACACTCCACTGAGTCCCAGGGATCCCACCCCTCCAAAGTCTCTAAGTCCTCCAGGAACTCAGCCTACCAACTACCTGCTCTGTTAGCTGCCTCCAGTGCACACTCCCTGGGGGCGCAAACTGCTGAGATCCTCCCATCCCTgggtctcccctccctccaccagGGAAACTTCTCTCACTCCAAGGGGGACAAGACTGACACTAACGGACACAATGCAGGCGGGGGGAGCCAGTCAAATGAGTACCAGGACACATTTGAGATGCTGAACTCTTTACTGAGTGCTCAGGGGGTCCAACCTGCTCAGCCTCCCATGTTTGACTACCGGTCTCAGTACGGGGAGTACAGATACAGTGGAGGGTCGAGGGGGGGCTCTCGACCGCCACCCCTGCCTGCTGAACCTCCACCCCCGCTACCCCCTTTACCCAAATGATCCCTGATGAAGGGGTGAATTACTGACAGTATCTGTAGACGCCTCCACATCCTTCCATAAGACATTTGCACTGTGACTTTGGGTCCCTTTATGTGTTTGAAGGAATCATGTTGTGGTTTTCAACTTGACAGCAAAGAAATGTACTTCCAATACATACTTATCAGTGATGCATGTACAGAAGTTTCTCCCTTGTTACATCATCATATCCAATACATCTGTGGGGCAATAACAGGTGTGAAAGAAAACAAAAGgaatttatttataaaaaaatgtaaatactatTTTTGATGTTATTCATTTTTGTATTGTGATATGAACTCAAATCCAATTTCATGGAATGACTGGACCTGATACTTTAAACATGGCTGTTTTAAGGAATTTTGAATGCACAGTAGAAGAAACAAACTTGTCTGCTTCACTTCTTAAATTGTGTATGTCTCGCTAACAATTAGTATTTTTcagaatgtttttaaatgtactaTTTATTATTAGTGTTGAATGCAATTAGAACATTTTGCCAACTGCCTCCCCTGCGCTTTCTGCTGTGTCCTGTTGAACTGAATGATAGTTGAGGGCTCCTTACACAAGTCTATTTGAGAATGCATGTCTTCAAAGCCATCGTTTGAAATGTTTTTGTTTAAAAAGTAGTCACTGAATCagatctccccccccctccattttGTCTATTATAGTACATTTTTCCCCTCTGCATTATTTGCAACACTTTATATATTAATTATGTAAAATGACTTTAGTGGATAAAATATTTTCACATTTAGTTAAAAGttgcaaaaaatacttgaaattTAAAAGGAACATTTCAGTTTTTCTACTTCATATTCATCTCTAGCACCACCCCTACATCAACATGTGAAAATTGTGCATTTTTTTTGTAGTAAAAAATAGAGTAatataagtgtttccaatgagtATGCAATGCCAACTCGTATTTGGTTTAAATCCAATGGTGCATATTAGGAAAACTTATCTTCCTCTCTTTTaaattttaaatgtaatttttttacTAAACATAAATGTGCCATTTTCACATGTTGATTTTGGGTAGATGCTGGACATGACAAATATGAAGTTgactttaaaaaatatttttttttattttccttgAGGCTTGTATTTTAGTTTCTAGATTTGAATGTGTTGCAGTCATTGTTTTAAATGGTTGTAAAATGTTAGTCATAATACTCAAATAATTACACTAACGTACAGAGTTTATACTACAGTACTTATCTACATATTCCTACACATTTTGATAATGGACTGATTTTTGTCTTAGTGCTTTGAACAGAATTCATAGTGTTGCTTCCACTACTGTTTTAACGATAACTGATGTCTTCACTCGTACATTTTGAATGCAactgaaattgtatttttgtgaGATTTTGATAAGGTGCATAATCATTTGTCTATATTATTTAGATAATTTGTTTTTCTGGTTTCATGCCACACCATATGGTTGCTTGTGGCAATCACACCATGTGGTTGCTTGTGGAGATCACACatgctcaactgagggactttTTTAGAGGTTTTAACATAACATCTCCGGTACCACTGTGTCAACCATCACTGTCTACATTTAATTTCAGTGAGAATGACCTGTTCAATTAAGATAATCTTTCCCTTCATGTTCCAGACTTGCTATTTGTCATGCTTATGAACAAACTGGTATAGTCTTTCTCCTTGAATCATGTTTAAAATTGTATGATAGTGGAAATGGGCTTGAACTTAGCTCTGACATGTTTCAGACCGTTTAACAGAACTCTCTTTGTCCaatagatgggttagctgacaacgtcacaAAAACGATGCACATGtttcaatggggcagaagtctgtgtgttgtgattctggatggccagatggcTAGAACCAATACAAGAGACTGCTCATTTCAGTTAGTtttcttgttcttgataccatgtcttgtttttaggtgttttgactgatgtcacaTCTTTGCTAATATGGCTAAACTTCacaagctagctaaccaacaactgtaacaatgtatttgagagacaagtgctcattgtgcaaatgtatttatgttttcaataaacattggagactaaatatagtttacatgtcaaCAATTTAAGCCAacactgtctgttttgccccatagttgtgcACACATCGCTTTTGCTTAGCAACCAACCAATCTATAAGCTGCCAATGGACAATTAATCAGCTGGAAATCATGTAACACAGCTGTGGCATACTTATTTGATGTGGTATTTTGCTATTGATTGGTTTTGTATATAATGGAAAGAGTTGACATTATGGGAGCTGTTTCCTAGTACTTTAACTGATGTATTAAGGGAACAGGTGTACGGTTCTACTGTTTCTACAGTCTGCTCAGTTTCTACAGTACTTGAGCCCAACCATTGATTCTTGTCACTCAGGTAAGCCTTTATGATGATATATGAAGAGGAACACATGGATATACTTTAAAATGCACTGAATCTCTATCCCAGCAAGATTGTAATCAGATGTTTTATTGTTAAAACTGAGGAAATTGTATTTTGTATTACCAAGAGCATTATGCTTCCATTCTGTGTTTTGTATTATAAGATAAGACACATTATCGTACTATATTTAGTTAAGGATCGACTGGGACTGATACATGGATAACTGTATGCAGTCTGTCTTGTGTGAATGCTTGTTGAACATGAATGACTACAAAATAACACTGATATGAAAATAGAAGGAAGACATGCAACCAAGTGCAAAGTCACTGCTACTCATCTACTTCATAATCTTTTCCAAAAGTTGTATCGGTTTGTACCTATTGTCACATCTTGTTAATGTTGTCGTGGTACCACAAACTCAGGTCTGGAATAGGAATGTTTGGGCTAtcttttgtttaaaatgtatctAAAAGTCTGCATTGTTTTGTTGTGAACATggttattttaaaaaaatgtgtttgatatAATCCCATGTCAATAAATGTTTGAAGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU944261 lncRNA upstream 12345 64087062 ~ 64087298 (+) True G830471
TU944248 lncRNA upstream 37145 64050821 ~ 64062498 (+) True G830458
TU944191 lncRNA upstream 67292 64024602 ~ 64032351 (+) True G830408
TU944189 lncRNA upstream 77421 64021031 ~ 64022222 (+) True jph2
TU944235 lncRNA upstream 106799 63992626 ~ 63992844 (+) True G830445
TU944282 lncRNA downstream 1633 64112546 ~ 64112988 (+) True G830490
TU944284 lncRNA downstream 4361 64115274 ~ 64115597 (+) True G830492
TU944287 lncRNA downstream 6473 64117386 ~ 64117880 (+) True G830495
TU944288 lncRNA downstream 7749 64118662 ~ 64118934 (+) True G830496
TU944271 lncRNA downstream 18802 64129715 ~ 64167508 (+) True G830479
XM_021616720.2 mRNA upstream 5346 64088683 ~ 64094297 (+) False LOC110532647
XM_036988658.1 mRNA upstream 5346 64088683 ~ 64094297 (+) False LOC110532647
XM_036988659.1 mRNA upstream 5346 64089083 ~ 64094297 (+) True LOC110532647
XM_021616715.2 mRNA upstream 58418 64038575 ~ 64041225 (+) True LOC110532642
XM_021616713.2 mRNA upstream 77410 63993156 ~ 64022233 (+) False jph2
XM_036988661.1 mRNA downstream 23775 64134688 ~ 64166582 (+) False LOC110532648
XM_036988662.1 mRNA downstream 23775 64134688 ~ 64166582 (+) False LOC110532648
XM_021616721.2 mRNA downstream 23776 64134689 ~ 64166582 (+) False LOC110532648
XM_021616725.2 mRNA downstream 23776 64134689 ~ 64166582 (+) False LOC110532648
XM_036988664.1 mRNA downstream 23776 64134689 ~ 64166582 (+) False LOC110532648
TU943081 other upstream 501875 63565578 ~ 63597768 (+) True LOC110532619
TU942478 other upstream 1471801 62623239 ~ 62627842 (+) True LOC110532602
TU941829 other upstream 1909037 62189182 ~ 62190606 (+) True G828274
TU940445 other upstream 2848405 61212461 ~ 61251238 (+) True G827039
TU940086 other upstream 3437737 60661369 ~ 60661906 (+) True G826751
TU944593 other downstream 203165 64314078 ~ 64315926 (+) False G830755
TU944595 other downstream 203165 64314078 ~ 64316656 (+) True G830755
TU944792 other downstream 554835 64665748 ~ 64666311 (+) True G830923
TU945242 other downstream 768794 64879707 ~ 64883543 (+) True G831299
TU945674 other downstream 1255378 65366291 ~ 65368132 (+) False LOC110531237

Expression Profile