RNA id: XM_036988694.1


Basic Information

Item Value
RNA id XM_036988694.1
length 5436
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110532677
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 64879699 ~ 64985955 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaagggagggagagagagagaagggagggagggagagcgagaagggaggtagagagaaacttGCTGCTGCCCTGTTTTTACTGTCAAAGGGGCTCTGATGAATGTACACAAATCTCTCCAAATTTTCCTTCTGCTTATCTGTCTGTTTGGACCAGCAGCACCCCAGCTAGCGATCTATTAGTCTGTCTGCCAGCACAACATCGGAGTGGATGCGTCATATGATCATTCCAACCAGAACTCTCCTGAGGCAACCAGAACCTGTGCCCCTCATCCACTCCAGTGCCCTGATAGGCTGCCTCTGGAAGAACTTTCCAGGGTCTTCCAGGTGGTGTGTGTCTGATATTCCCCAGCCCAACTGCCTGAGACAGAGGGTCTGTCTGGGATACCACCAGCCTTCtgggtactcctctcctctctgttaccaTGGCTACCAACAGGGAGCGGCAGGTGGGTCACATGACAGGGTTTCCACCAGCTGTCTACCCATTTGCCTTCAACTCCATGCGGAACCACTCCCCCTTCGACCTGCTGGCCAATAGCAGACTGTTTGGGAGGTTCAGCACAGACCTCCCTAAAGAAATGGCCGCACTCTCGGTGGAGACCCAGAGCACCAGCTCTGAGGAGATGGTCCccagctctccctctccacctcccccaccACGCATCTACAAACCCTGCTTCGTGTGCCAGGACAAGTCCTCTGGATACCATTACGGAGTCAGCTCATGTGAGGGCTGCAAGGGTTTCTTCCGACGCAGTATCCAGAAGAACATGGTGTACACCTGCCACCGAGACAAGAACTGCCAGATCAACAAGGTCACCAGGAACCGCTGCCAGTACTGCCGACTGCAGAAGTGCTTTGAGGTCGGCATGTCCAAGGAAGCGGTGCGTAATGACAGGAACAAGAAGAAGAAAGATGTGAAGGAGGAGTTGGTGTTGCCAGAGAGTTATGAGTTGAGTGGAGAACTGGAGGAGCTGGTCAACAAAGTCAGCAAAGCCCACCAAGACACCTTCCCCTCACTGCTGCAGCTGGGCAAATACCACACCAACTCCAGTGCAGAGCAGCGCGTGCAGCTGGACCTGGGGCTGTGGGATAAGTTCAGTGAGCTTTCCACCAAGTGCATCATCAAGATCGTGGAGTTTGCCAAGCGCCTCCCCGGCTTCACCACCCTCACCATCGCTGACCAGATCACCCTCCTCAAATCAGCCTGCCTGGATATCCTGaTGTTGAGGATCTGCACCCGCTACACTCCAGAGCAGGACACCATGACCTTCTCAGACGGGCTGACCCTGAACCGGACCCAGATGCACAACGCAGGCTTCGGCCCGCTCACAGACCTGGTGTTTGCCTTTGCTGGCCAGCTTCTGCCTCTGGAGATGGACGACACAGAGACGGGCCTCCTCAGCGCCATCTCCCTCATCTCTGGAGACCGTATGGACCTGGAAGAGCCCCAGAAGGTGGACAAGTTGCAGGAGCCCCTCCTGGAGGCCCTGAAGATCTACGCACGTCGCAGACGCCCCAACAAACCACACATGTTCCCCCGCATGCTGATGAAGATCACTGACCTCAGAGGCATCAGCACTAAGGGGGCAGAGAGAGCCATCACTCTGAAGATGGAGATCCCAGGCCCCATGCCTCCTCTGATCAGGGAGATGTTAGAGAACCCAGAAGCATTCGAGGACCAAacagagagcagtggagagagcTCCCCACCGCCTGCCCCTCCACCCATTCCACCAGCATCCTCCAAGCCCCCCACCACCATGAAGACTGAGGCTGAGGACGAGGAGGACAGCTGGGGGACAGAGCCTTCcccagaggaggaagatgaggatgaCTATgatgatggggaggaggaggatcgGGACAGGGGCTCGGACAGCGAGGGGGAATCCTGGGCTCTGGAGGGTAGCAGCGAAGGGGCTAGGAAGAACCATGCCGGGAGGGCGCAGTGAGGATGAGAGATATCACAGATATGCAGACtctacactcaaacacacacactaactgacataatcaaacacacacacacacacacacacacacagaacaggacagagcaggacagggcaggacagcgtaggacagggcaggacagaacagcgtaggacagaacagggaaggacaggacagaacagcgtAGGACAGGGCGGGAAAGGAAAGGACAGGgagggcaggacagaacagcataGGACAGGGcaggaaaggaaaggacagggagggcaggacagaacagcgtAGGACAGGGcaggaaaggaaaggacagggagggcaggacagaacagcgtAGGACAGGGCAGGAAAGGAACGGACAGGgagggcaggacagaacagcataGGACAGGGcaggaaaggaaaggacaggGAAGGACAGGACAGCAGAGCCATATGGTTGCCTGTATAGACACTATAACTCAGGTTCCCTGACTCGCAGGTTCTTGACAAGTGCCATGCAGTGAGACTATAATAAAACGAGAGACggagaaaccacatgatgcaaccGTCTGGATTTGTGACTCGTGAtatagagaagagagaagaataCTATCTTTGACGAAGCAAATGTCAAATTTTTTACTATCTTCTTGTTTGTATCTATATAGAGGAATGTCCAAACCAGACAGCATGAACTGAACAGTAAATATGGATGCCAAGCAAAGCACACTTCTCAAAAAGAAATACAGAATGAAACCAAACTGAAAATGCTAATGAATTTGTTGGGCTTTTAAAAATTGTTTAATTTCTTCTTGTTTTATTTtcttgatttttatttttatttcaatttATGAATAAGTCCCTGCATATCTATATACCATTATATTATTAGTCTTTGTTTGTAATCCTGGTTTTGATTTCTTCAGATTAGGTTTTGTGTTTGAGGAGTTTTCCAGCGACGATATAGAGAGATCTGGAATCAGAATCAGAACCGGCGTACCGCCAGCTGAATCTCCTTTCCAAACTGGTGTTTTTTGGGCACTTTTGCTCGCAGTAGATGTCGATGATAATCAACTCAGTAATGTTAACTTGTGTTACAGTGACTCAAGTTGTGATTTGTTGTTATCAGGGGACTGGCATTAATCCATGTGCTTTCTTTCAACACAACAAACTATGCTGCCGATTGGACATGTGTCTTTGTGCCAAAGTTCGCAACTCATTTTCAGAAACAGAGAGTCAGTGACCCTAGACACCAACCAGTGCTCTCACACACATCAAATATTCTTGCCTAActtagacacacaaacacacaaacacacacacatacacacactaaatcTCGGCTCTATAACAGCTGTGCCATATTGGTTCGGGTGCTTAGACAGAGATTGACACTTGTCCATATATGTAGCACTTTGATATCCTGTTTTTAAATCAGGCAACGCTAGCAAAGTaagttacaatacaatacaatacaactttattaaATCAGGCAACGTTAGCAAAGTaagttacaatacaatacaatacaatacaactttattaaATCAGGCAACGCTAGCAaagttacaatacaatacaattcaatacaatacaactttattaaATCAGGCAACGCTAGCAaagttacaatacaatacaatacaatacaatacaactttattaaATCAGGCAACGCTAGCAaagttacaatacaatacaatacaatacaatacaacaatattaaATCAGGCAACGCTAGCAAAGTAAgttgcaatacaatacaatacaactttattaaATCAGGCAACGCTAGCAAAGTAagttacaatacaatagaatacaatacaactttattaaATCAGGCAACGCTAGCAAAGTaagttacaatacaatacaatacaactttattaaATCAGGCAACGCTAGCAAAGTaagttacaatacaatacaatacaatacaactttattaaATCAGGCAACGCTAGCAaagttacaatacaatacaatacaacaatattaaATCAGGCAACGCTAGCAAAGtctaatacaatacaatacaacaatatAAAATCAGGCAACGCTAGCAAAGtctaatacaatacaatacaatacaacaatattaaATCAGGCAACGCTAGCAAAGtctaatacaatacaatacaacaatattaaATCAGGCAACGCTAGCAAAGtctaatacaatacaatacaatacaacaatattaaATCAGGCAACGCTAGCAaagttacaatacaatacaatacaacaatattaaATCAGGCAACGCTAGCAaagttacaatacaatacaactttattgtccaATATTGACAGTACCGTCACTGCCAATCTTATCTCAACAGAAATCATCAGATGTCTGTCACATTAAATAACTATTTGACGATGTGCACAAGCAGACACTATTGCGTACACAaaaacacccacacacccacacacacacaaccaggatCTGTTATGGACAATGACATGGAAACAGACTTCTCAGGGCTTCTCTGTAAGGACCAAACCCTAGCATGTTTGCTAGAAACAGGcaatatttatgtgtgtgtatttttgacTCAGTCAATTGGATCTGTCCAGTTAACCCCTATCTCTGTGTACATAGAAGATATATGACTAGTCTACAAATGGCCTGGATGCCAGTCTgttacccttttcacactatcaTGACAACCTAACCCAAACTGTGCTGACTTCACATTGTCCTTCAGTCCACGGTTCCAACAACTATGGTGAGTGCATAACTAGGCCAGCTCTGTACAGCTCAGTTTGGCTTGGCTTGGCTCGCTAGTGTGAAAAGACCAAACCTGTCTCAGACCAGATTTGGCCTGCAGCATTGTCACTGCTCTGCCATGCCTGACCTGTGCTGCTGGCATCCAAGAAACCAACTGCCTTCTCATCTAAAAGCCATTATATCATCATGTCTTTGTAAGGTTGTATGATATTCTCTCTCAGCGTTTTGTGTTCTCATATTTCATTTCTTCTCAATCGTCTTTGTTGCCAAAATGTCTCAGTCAATATGTAACCAGCTGGTCATAGTGCAGCTGGctggctacatacagtacagaggTTTGTATGCAGTCTCTCTGTGAAGCAATATGAACAGGAATGTGACAGCCTCccagcagtagagagagagtgacctaCTGTACAGTACTCTCTGAATGTGGGCCTCCTGACCTGATTTGAGTGTGTATTAactctttaacatgtctcctctgCTATTGGGTGAATGTTCTCTGTATGGTGCTGTGATGTCATACGACGCCGAGCGGAGCAGAGAAGCGAGGTTTGATGACCTCATCACCgctcctctctgtctgccctgCCAGGCATTCATGATGCAAACACAACGCTGAGGTTATGTTGTTACACAACATGGTTCTGATGCAGGTGTTATTTTCTGTAAAACACGGCCAAGGTATTGTCCAATTTTCTGTTCATACCAACTCatacaaagaaaaagccatataaaTAAATTACTTTTGTGAGATTAA

Function

GO: NA

KEGG:

id description
K08529 RARG, NR1B3; retinoic acid receptor gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU945358 lncRNA downstream 10180 64865944 ~ 64869519 (-) False G831393
TU945359 lncRNA downstream 10180 64865944 ~ 64869519 (-) True G831393
TU945348 lncRNA downstream 21117 64856223 ~ 64858582 (-) True G831385
TU945319 lncRNA downstream 68516 64810973 ~ 64811183 (-) True G831364
TU945197 lncRNA downstream 99629 64779837 ~ 64780070 (-) True G831258
TU945542 lncRNA upstream 22834 65008789 ~ 65009002 (-) True G831541
TU945544 lncRNA upstream 24311 65010266 ~ 65010489 (-) True G831543
TU945545 lncRNA upstream 24747 65010702 ~ 65010934 (-) True G831544
TU945546 lncRNA upstream 26146 65012101 ~ 65012552 (-) False G831545
TU945547 lncRNA upstream 26146 65012101 ~ 65023699 (-) False G831545
XM_021617159.2 mRNA downstream 106794 64768591 ~ 64772905 (-) True LOC110533032
XM_021616766.2 mRNA downstream 119038 64756584 ~ 64760661 (-) True LOC110532675
XM_021616765.2 mRNA downstream 134722 64741165 ~ 64744977 (-) True LOC110532674
XM_021616759.2 mRNA downstream 159304 64716626 ~ 64720395 (-) True LOC110532669
XM_036988688.1 mRNA downstream 159372 64716626 ~ 64720327 (-) False LOC110532669
XM_036988704.1 mRNA upstream 110666 65096621 ~ 65123876 (-) False LOC110532684
XM_036988703.1 mRNA upstream 110666 65096621 ~ 65131339 (-) True LOC110532684
XM_036988708.1 mRNA upstream 420958 65406913 ~ 65498864 (-) False LOC110532685
XM_036988709.1 mRNA upstream 420958 65406913 ~ 65498864 (-) False LOC110532685
XM_036988710.1 mRNA upstream 420958 65406913 ~ 65498864 (-) True LOC110532685
TU945127 other downstream 166029 64711672 ~ 64713670 (-) True LOC110532670
TU944340 other downstream 838488 64027907 ~ 64041211 (-) False G830543
TU944343 other downstream 838488 64027907 ~ 64041211 (-) False G830543
TU944349 other downstream 980395 63862848 ~ 63899304 (-) True LOC110532632
TU943351 other downstream 2087203 62790588 ~ 62792496 (-) True G829644
TU946068 other upstream 384898 65370853 ~ 65413071 (-) True G831986
TU946093 other upstream 428540 65414495 ~ 65418096 (-) True G832008
TU946527 other upstream 790628 65776583 ~ 65781798 (-) True G832392
TU946537 other upstream 807902 65793857 ~ 65795190 (-) True G832401
TU946612 other upstream 960227 65946182 ~ 65946593 (-) True G832461

Expression Profile