RNA id: XM_036988712.1


Basic Information

Item Value
RNA id XM_036988712.1
length 6740
RNA type mRNA
GC content 0.48
exon number 28
gene id LOC110532688
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 65559624 ~ 65605343 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTTTGCCAAACTCTGTCTGAATTGACGCACCATATCGGAATTTATTCACCGCCCATATTCACTTATCTAATAATAAGATCATGTTTCTGCGTCAAGTCAATCTGCCACTTTAAAAAGGCTTCTTATTAGAGTGAAATGTAAAGTAATCGTGGTACTGAATCTTGGACCTATAACTGTAGATTTGAGTCTCGAGTCTTATGAAGATCAACCTTGAATTTATAATTTGTTGAAATAGTTTTACCTTTCCCCAAAAAAGTATCGAACGAGTTGAGGACTTCTTGAGGATTAAACCGACCTGCGCTACTGTATTCCTGGTCATGATTATTATTGGGTTGGTTTGGACCTAGGCATGGACGGTTTGCAGATGTCCGTTCTGTGTATTGTAATTCTAACATGTCTACAGCCCACGTCGTCTCAAACGCAGGAAGtggtgtgTACTGGTACCCAGAATGGGCTGAGCTCCACAGGATCCCAGGAGAACCAGTACAACCTGATCAAGAACCGCTACACAGGCTGTGAGATCATCATGGGTAACCTGGAGATCACCCAGATAGAGACTGACTGGGACTTCAGCTTCCTAGGGaCCATCAGAGAGGTAACGGGCTACATCCTAATCGCCATGAACCACTTTAGACGTCTGCCTCTGGAACAGCTGCGTGTGATCAGGGGCAACACCCTGTACGACAGAGGGTTcgccctctctgttttctacaaCTACCCCAAGGAGGGCTCCAATGGCCTGCAGCACCTGGGACTCACATACCTCACTGaaatTCTGGAGGGGGGTGTCCAGATCGTCAACAACAGGTTCCTGAGCTATGGTCCCTGGGTGAACTGGGATGACATTGTGAGGGACAGGGATAGGGCGAAGGCTCCCATTGACATCCAGTACAATGGTCAGAGAGGGCCTTGTCACCCTTCATGTGGGGAGAACTGCTGGGGGTCTGGTGAAGAACACTGCCAGATCTTGACTAAGACGGTGTGCGCCCCTCAGTGTAACGGCCGCTGTTTTGGGACAAGCCCCAGGGACTGCTGTCACATAGAGTGTGCAGGGGGCTGCACTGCGTCTCAGGACATGGACTGCTTTGCGTGCCGTCACTTCAACAACTCAGGCTCCTGTGTGCCCCAGTGTCCCCAGACTCTGATCTACAACAAGCAGACGTTTCAGATGGAGACGAACCCCAACGCCAAGTATCAGTACGGATCCATCTGTGTCTCCCACTGCCCCCCCCACTTCGTGGTGGACGGCAGCTCCTGTGTGAGCGGTTGTCCTCCAGACaagaaggaggtggagaggagtggTCAGAGGCAGTGTGAGCTCTGTGGAGGGCTGTGCCCTAAAGCCTGTGAGGGCACAGGGCCTGAGCACAGACAGACGGTGGACTCCAGTAACATTGACAGCTTCATCAACTGCACCAAGATACAGGGCAGTCTGCACTTCCTGGTCACAGGGATTCTTGGTGATGACTATAAGAATATCCCACCTTTGGACCCTAAGAAGCTGGAAGTCTTCCGCTCTGTGCAGGagataacagATATCCTAGCCATCCAGTCGTGGCCTAAAGAGCTATCAGATCTGTCAGTGTTCTCCAGTCTTACCACCATACAGGGCAGATCTCTTCACAACGCAAAGAGgcgtTTCTCTCTGATGGTCATGCGTGTTGCGTCCATCACCTCTCTAGGTCTGCGTTCCCTGAGAGAGATCAGTGACGGCAACGTGTACCTCAGCCACAACGCCAAACTGTGTTACCACCACACCGTCAACTGGACACGCCTGTTCACCGGGCACTCCACAAGCCTCAACGACATCAAGGACAACAGGCCTCTGAGAGAGTGTGttGAGGAGGATCACGTTTGTGACCCACTGTGTTCAGACTCAGGCTGCTGGGGCCCGGGGCCTGACCAGTGTCTCTCCTGCAGGAACCACAGCCGAGACTCTACCTGTGTGGCCCACTGCAACTTCTACACAGGTCAGCCCAGGGAGTTTGCGGGGCCAAAGGGGGAGTGTGTCGCATGTCATCCAGAATGCCAACCGCAGTATGGGAGGGATAGCTGCACTGGACCGgggtCTGATGAGTGTGTGATGTGTTCCAGTCTGAGAGACGGTCCTCACTGTGTGTTCTCCTGCCCCAGTGGGGTGAACGGAGAGAACGGGCAGTTCATCTACAAATACCCCAACAAGGACAGCTACTGTGAGCCCTGCCATGTCAACTGCACACAgggGTGTTCTGGTCCAGGGTTGAGTGACTGTATAGACAACACTAGACAGTCCACTAGCACTCAGATCACAGGAATAGCTTTGGGAGTGCCGGCTGCCCTCATAGTATGCCTGGCATTGTTTGTGTTGGGCATGCTGTACCACCGTGGCCGGGCCATCCGCAGGAAGAGAGCCATGAGGAGGTACCTGAAGAGTGAGGAGAGTTTTGAGCCGCTGGGGCCAGGAGAGAAAGGGGCTAACGTTCATGCCCGGATCCTGAGGGCCCCAGAGCTGAAGAAGGTCAAAGCCCTTGGCTCTGGAGTGTTTGGTACTGTACACAAAGGCCTGTGGATCCCTGAGGGAGACTCCGTGAAGATTCCTGTAGCCATTAAGACCATCCAGgaccacacaggcagacagaccttCACTGAGATCACTGATCACATGTTGTCCATGGGCAGTCTAGACCACCCGTATATTGTCAGGCTCTTAGGTGTCTGTCCAGGTGCCAGTCTACAGCTGGTCACCCAGCTCAGCAGCCAGGGGTCCTTACTGAAGCACATCAGGCACCACAGGGACAACCTGGATCCACAGAGGCTTCTCAACTGGTGTGTACAGATAGCTAAGGGCATGTATTATCTGGAGGAACACTGTATGGTGCACAGGAACCTGGCTGCGAGGAACGTGATGCTAAAGAATGATTACTTCGTCCAGATTTCTGACTACGGTGTGGCTGACCTGCTCTATCCTGATGACAAGAAATATGTCTACAGTGACAGTAACAAGACTCCCATAAACATAAAATGGATGGCCCTGGAAAGCATCCTGTTCCGAACATACACTCATCAGAGTGACGTCTGGAGTTATGGAGTGACAGTGTGGGAGATGATGTCATTCGGAGTAGAGCCCTACGCATCCATGCAGCCCCAAGATGTCCCCGGTGTACTGGAGAAGGGAGagcgcctgtcccagccccacaTCTGTACTATAGACGTGTACATGGTCATGGTTAAGTGCTGGATGATTGATGAGAATATTCGCCCGACCTTCAAAGAACTGGCCAATGACTTTATTCGCATGGCAAGAGACCCACCTCGCTACCTTGTCATCAAGGACAGAGGAGAGGCGCGGCCAGAAGAATCCCACCAACAAGACTCAGAGCTGGACAATTTGGAGGCGGGACTGGAGGACCAGGATGAGGAGGGATTGGAGGACGGTTTGGCCACCcctccccttaccctgtccccatccagGATGTCTCGCCTGAGGATGAGCTCATATAGGAGTGCCAGTGCCACCTTTCAGGCCGGACCAGTAGAGTACCTTCCCATGACCCCCAGCTCTGGAGAGTTGTTCTCCCAGCAGTCTCGTCTGAACTCAGCGAGGACACTGTCACAGGGGTTAGAGGGAAGAGGGAGTGGCCTGGATTTTGAGCTGGCCGAGGGAGTGTCACTGAGCGGCAGCTTGCGCAGGCAGCATCCCAGAGCTGGCAGGGACAGTAGCAGTAGTACCCACCACACCTCCATCACCATGGAGCATAGGAGCCAATCTGCAGTCTCAGAGTCACACTCCAACAGGCCTGAgcaagaggatgaggaggaggaagatcaCTATGGATATGTGCTGCCTGGAGTGTCTAACActccagagagagATTGTCTGCTGTCTCGCCCAGCCTCCAGAAACTATCGCCCAAGTGGAACATCTCTCAGGGGCTCTAGGAGCTCCAAAAATGTGCTGTCACCGTTAGCAACTGCCCCAGACCCCACCGCGGACTATGAACAGATGACCAAACAGCCAGCCCATTTGCCCCGCTCCCCCAGAGCCACCTCTGTACAGATAGAAGGGCCTTCATCAGTGGTATGGAGGAAACAGTCCTCAACTCTCCCCTCCCCAACCTACAATATAGCACCCTCACCACTAGAGGGTGACAACACAGTGCATGGGGCCTCACAGGAGTCATCGTCAGGCACTGCTGCCACTCCTGGGGGAAGCCAGGGTTCAACAGAGACCTCTGATAGTGCAGTGGCTAGAGTAGCAGAGGGATACATGCTGCAGCCGCTGGTTGACAGGCCTTACAGTGGATCTGTTGTGTCTGACAGTGGAGGGGTGACTCAGGGGAGGCCAGAGAAAGCGTCTGTAGTGGAGTATGAATACATGGATATCCGGAGCACCACAAACACCACAGACACAGAAAGACCGATCTGGGAGAGGCGTGAGAGTGGAGCAGCTGACTTGAGGAGGACAGAGGCAGAAGAACGAGcgagagaagaagaaggaaagagtcaggaggtagaggaggagaaaggaaaggaagggGAGGAAGTTTACCAGTACACTAACAAGCAGCCCAGACTCCTCAGAGAGAGCAGTAAAGTGGCGGGGCTCCTCCCCAAGCCCAGCCTCCTCCCCAAGCCAATGCCCAAGCCCAGCCTCCTCCCCAAGCCAAGGCCCaaacccagcctcagccccaatCCCAACCCCAGGCCAGATGGCTTCACAGCAGTGGAAGACAGCAAGGTGGAGGTATATGAGGAGATGCATGCCTTTGGAGGGGGCTCCCAGCGAGGGGACCACCAGGAGGCAGAGTACCAGAACCTCCCAGTCCCAGGCAAGGGGAGGGCCACCACGGCTGAGGATGGGGGCGCGGGTAGCAGCTGTGCCGGGCTAGGGTTGGGAGGGTACATCAAAGCATGCTCTGGTGTGGGAGTGGTAGAGCCGAGCAGCAACACATCGTTTGACAACCCTGACTACTGGCACAGCAGACTGTTCCTCAAGCCAGATGCTGTGCGCACATAATGATGTGGActgagaaaacaacaacaaccgtGACCAAGCAAGCACAGCCAGAGGTGTTTTATAGAATCATGTAACAGGCTGGGTTGCAGCTCAACCAGTAATGTAGCGCTCTTTTAGtactgttgaatgtgttgtttataatgtagtgtatgtattcTCAGTTGGTTTACACATCATCCATCCAAACATCATTGAACAAAAAAACATCTGCAAAATGTCCTATGTAGCATTAATGTTATCTATCAGTTTATAGTGACATCTCAGTCTAAGAAATGTAACCAAATAGGCAGCTATATAttaaacaacagcaaaggatggCCTAAGCTGTGAGCAAGAATCAATAAGTCAAAGACAAACAGAATAGTGAGAAATAGATGCACATAGATCTTAATGTACGAAGATACACAAAGCATATAGAATGTACAAAGATACACAAAGCATATAGAATGTACAAAGATACACAAAGAATATAGAATGTACAAAGATACACAAAGAATATAGAATGTACAAAGATACACAAAGAATATAGAATGTACAAAGATACACAAAGAATATAGTGTACAAAGATACACAAAGCATATAGAGTGTACAAATATACACAAAGAATATAGAATGCACAAAGATACACAAAGAATATAGAATGTGCAAAGATACACAAAGCATATAGAATGCACAAAGATACACAAAGAATATAGAATGTACAAAGATACACAAAGCATATAGAATGTACAAAGATACACAAAGAATATAGAATGTACAAAGATACACAAAGAATATAGAATGTACAAAGATACACAAAGAATATAGAATGTACAAAGATACACAAAGAATATAGTGTACAAAGATACACAAAGCATATAGAGTGTACAAATATACACAAAGAATATAGAATGCACAAAGATACACAAAGAATATAGAATGTGCAAAGATACACAAAGAATATAGAATGTACAAAGATACACAAAGAATATAGAATGTACAAAGATACACAAAGAATATAGAATGTACAAAGATACACAAAGAATATAGAATGTACAAAGATACACAAAGAATATAGTGTACAAAGATACACAAAGCATATAGAGTGTACAAATATACACAAAGAATATAGAATGCACAAAGATACACAAAGAATATAGAATGTGCAAAGATACACAAAGAATATAGAATGTACAAAGATACACAAAGAATATAGAATGTACAAAGATACACAAAGAATATAGAATGTACAAAGATACACAAAGAATATAGAATGTACAAAGATACACAAAGAATATAGAATGTACAAAGATACACAAAGAATATAGAATGTACAAAGATACACAAAGAATATAGAATGCACAAAGATACACAAAGAATATAGAATGTACAAAGATACACAAAGAATATAGAATGTACAAAGATACACAAAGAATATAGAATGTACAAAGATACACAAAGAATATAGAATGTGCAAAGATACACAAAGCATAGATACATAAAGTAGAAATAGCAGGCCAATGTACACACACTAATGGATCAAATTTGCACAGTGTTTGCACTTCAACTTGTTCCACTTCCTGGTGAAGCTGAGTTGACCTACATAGATAGAACCTCAAGGTTCCCTGGGTGTGAGGTCTGCCATGTAATGTACATTTGTAGCTTATAGTTTCCTCTATGAAATGAAGTATTCTTGATGAACATGACTGTATGGATGAATTTCAGTCATGTATTGACTATGTtattacaagtgtgtgtgtgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU946077 lncRNA downstream 12489 65546704 ~ 65548644 (-) True LOC118966093
TU946163 lncRNA downstream 25957 65534910 ~ 65535176 (-) True G832075
TU946157 lncRNA downstream 37928 65522986 ~ 65523205 (-) True G832069
TU946154 lncRNA downstream 42412 65518381 ~ 65518721 (-) True G832066
TU946152 lncRNA downstream 50414 65510349 ~ 65510719 (-) True G832064
TU946188 lncRNA upstream 290 65605633 ~ 65605885 (-) True G832096
TU946187 lncRNA upstream 768 65606111 ~ 65606716 (-) True G832095
TU946189 lncRNA upstream 8452 65613795 ~ 65614603 (-) True G832097
TU946207 lncRNA upstream 28880 65634223 ~ 65634498 (-) True G832111
TU946221 lncRNA upstream 39565 65644908 ~ 65645151 (-) True G832125
XM_021616779.2 mRNA downstream 1453 65551960 ~ 65559680 (-) True LOC110532687
XR_005053323.1 mRNA downstream 12317 65546744 ~ 65548816 (-) False LOC118966093
XM_036988711.1 mRNA downstream 22388 65499480 ~ 65538745 (-) True LOC110531238
XM_036988708.1 mRNA downstream 62269 65406913 ~ 65498864 (-) False LOC110532685
XM_021616782.2 mRNA upstream 5870 65611213 ~ 65619908 (-) False LOC110532689
XM_021616783.2 mRNA upstream 5870 65611213 ~ 65619959 (-) True LOC110532689
XM_021616802.2 mRNA upstream 24721 65630064 ~ 65635839 (-) True LOC110532706
XM_021616800.2 mRNA upstream 68442 65673785 ~ 65682112 (-) False LOC110532704
XM_021616793.2 mRNA upstream 197434 65802777 ~ 65827899 (-) False LOC110532699
TU946093 other downstream 143037 65414495 ~ 65418096 (-) True G832008
TU946068 other downstream 148062 65370853 ~ 65413071 (-) True G831986
TU945127 other downstream 847463 64711672 ~ 64713670 (-) True LOC110532670
TU944340 other downstream 1519922 64027907 ~ 64041211 (-) False G830543
TU946527 other upstream 171240 65776583 ~ 65781798 (-) True G832392
TU946537 other upstream 188514 65793857 ~ 65795190 (-) True G832401
TU946612 other upstream 340839 65946182 ~ 65946593 (-) True G832461
TU946633 other upstream 395876 66001219 ~ 66001734 (-) True G832480
TU946657 other upstream 430529 66035872 ~ 66036180 (-) True G832503

Expression Profile