RNA id: XM_036986965.1



Basic Information


Item Value
RNA id XM_036986965.1
length 594
RNA type mRNA
GC content 0.51
exon number 2
gene id LOC118965939
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 66481679 ~ 66482379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGATAGGGGCATCTGTTATGGATCCCAGGGCTACCTGAAAAGGGACTGTTATGGATCCCAGGGCTACCTGAAAAGGGACTGTTATGGATCGCAGGGCTACCTGAAAAGGGACTGTTATGGATCCCAGGGCTACCTGAAAAGAGACTGTTATGGATCCCAGGGCTACCTGAAAAGGGACGCTTATGGATCCCAGGGCTACCTGAAAAGGGACTGTTATGGATCCCAGGGCTACCTGAAGAGGGACTGTTATGGATCGCAGGGCTACCTGAAAAGGGACTGTTATGGATCCCAGGGCTACCTGAAAAGGGACTGTTATGGATCCCAGGGCTACCTGAAAAGGGACTGTTATGGATCCCAGGGCTACCTGAAAAGGGACTGTTATGGATCCCAGGGCTATCTAAAAAAGGACTGTTATGGATCCCAGGGCTACCTGAAAAGGGACTGTTATGGATCCCAGGGCTACCTGAAAAGGGACTGTTATGGATCCCAGGGCTATCTAAAAAAGGACTGTTATGGATCCCAGGGCTACCTGAAAAGGGACGCTTATGGATCCCAGGGCTACCTGACGAGGGACTGTTTTGGCTTACGGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU947044 lncRNA upstream 7089 66474365 ~ 66474590 (+) True G832844
TU947042 lncRNA upstream 8088 66473342 ~ 66473591 (+) True G832842
TU947032 lncRNA upstream 16126 66465209 ~ 66465553 (+) True G832832
TU946896 lncRNA upstream 49261 66432055 ~ 66432418 (+) True G832712
TU946895 lncRNA upstream 49690 66431698 ~ 66431989 (+) True G832711
TU947073 lncRNA downstream 3639 66486018 ~ 66486252 (+) True G832850
TU947074 lncRNA downstream 4607 66486986 ~ 66487456 (+) True G832851
TU947075 lncRNA downstream 7914 66490293 ~ 66490889 (+) True G832852
TU947141 lncRNA downstream 114839 66597218 ~ 66600114 (+) True G832905
TU947133 lncRNA downstream 123397 66605776 ~ 66616927 (+) True G832902
XM_021616804.2 mRNA upstream 135 66478086 ~ 66481544 (+) True LOC110532708
XM_021616803.2 mRNA upstream 24775 66451326 ~ 66456904 (+) True birc5b
XR_005053326.1 mRNA upstream 253034 66227416 ~ 66228645 (+) True LOC118966097
XM_036988729.1 mRNA upstream 351836 66110389 ~ 66129843 (+) False LOC110532691
XM_021616807.2 mRNA downstream 24097 66506476 ~ 66516002 (+) True LOC110532709
XM_021616809.2 mRNA downstream 100436 66582815 ~ 66593585 (+) False LOC110532711
XM_021616810.2 mRNA downstream 100498 66582877 ~ 66593585 (+) False LOC110532711
XM_021616811.2 mRNA downstream 100498 66582877 ~ 66593585 (+) False LOC110532711
XM_021616812.2 mRNA downstream 100632 66583011 ~ 66593585 (+) True LOC110532711
TU946270 other upstream 680848 65798377 ~ 65800831 (+) True LOC110532701
TU946236 other upstream 810196 65669429 ~ 65671483 (+) True LOC110532705
TU945927 other upstream 858363 65622938 ~ 65623316 (+) True G831865
TU945861 other upstream 966694 65514393 ~ 65514985 (+) True G831810
TU945674 other upstream 1113547 65366291 ~ 65368132 (+) False LOC110531237
TU947383 other downstream 276899 66759278 ~ 66759673 (+) True G833100
TU947422 other downstream 332085 66814464 ~ 66821639 (+) True G833139
TU947546 other downstream 449309 66931688 ~ 66934487 (+) False G833241
TU947547 other downstream 449309 66931688 ~ 66934487 (+) False G833241
TU947549 other downstream 449309 66931688 ~ 66934487 (+) False G833241

Expression Profile