RNA id: XM_036988738.1


Basic Information

Item Value
RNA id XM_036988738.1
length 4775
RNA type mRNA
GC content 0.53
exon number 29
gene id l1cama
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 66627920 ~ 66751125 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGagcgagggaggcagagagagagagggagagagggtgtgtttTTGTATCACTGCAGCatcagcacagagagagaggagagggcacaaTCAAtttgatagagagaggggaagagagagagagcgaggggaagaAAACAAGGAGGACAGAGGAAAAGGAGAATCAACATCCCTGAGGCCATCTTTTAAACCTGTGGAGGGAAGACTGCAGGAGGGTGTGGACCTGagcgaaaaagagagaaaaaagagagagaggctgagagccAAAGGAAACCAGGAGAAAAAGGTAGAAGAAAAGGAAGAGAAACTCTGGCTGAACATCGGGCGtgacaacagagacagagagagagtcacacgCTCGCTCGGCAGGAGTGTGTGCAGATTGCCCTCTGTGTGCGTTTCACGTGTGTGTTGAGCAGGTGGGACTTTGATGGGACAGTGAGCAATGCCTCACACTCAGCAACATCAGGTTGGCAGTAGGGGGCGAcgcccccatctcctcctccaccctatcctcctcctccctctcttctctctcctcctatcccacgCCCCCCAGCTCAGCCAAGGAGCCATACACATACCTTCTAACTTTAAGAAACCCCCAGTGATCACCACCCAGCCTGAGTCCATCACTGTGTTCGGTGCTGAAGACATCCTCCTGACCTGCGAAGCATCAGGGAACCCTCCTCCCGAtttCCGCTGGACTAAAGATGGGGAAGAATTTATCCCTGCCAATGACCCGGGCCTGTCGGTGTCTCCGGGTTCTGGAACCTTCATGAAAACCGGGGTGGTGTCAGGCCCCATTAGCCAATACAAGGGCAAATACAGCTGCTACGCTGAAAACGCATTAGGAACTGCTGTGTCTAACGAGGTCCAGCTCATCACTGAGAATACCCCAGCCCTGCAGAAAGAGCAGAAGGTGAAGAAGaaggtggaggaaggagagagtgtggTACTGAAATGTAACCCTCCCTTCAGCACTGTTCCTCCTGTCATCCACTGGATGGACGAGcgaATGCATCACATTGAGCTAAATGATCGTGTAACCCAGGGCCGGGACGGGAACCTATACTTCTCTCACGTCACCGTCGATGACACCCGTATTGACTACACCTGTAACGCCCAGTACCTCAGCGCTCGCACCATCCTCTCCAAGGAACCCATCACCATGACTGTTACAACCTctaACTCAGTGGTTCGGAGCCGAAGGCCCCAGATGATGAGGCCCTCGGGGAGCCACAGCACTTACCACGCCCTCCGGGGCCAGAGCCTGGAGCTAGAGTGCATCGTCCAGGGCCTcCCTACCCCTACAGTCCAGTGGGTGAGGAAGGACGGTCAGCTGTCCGAGTCCCGTACGTCCAGACATCTGTTTGACCGTCTGCTGCGCATCAGTAACATCTCAGATAGCGATGGGGGAGAGTACCAGTGTTCAGTCAACAACTCACAGGGCAAggtcacacacacctacaccGTTAGCGTCGAAGCGGCTCCATACTGGACCAAGGAGCCAGTAAGCCAGCTCTATGCCCCAGGAGAGACGGTGAGACTGGACTGTCAGGCTGATGGCATCCCGTCTCCTGCTGTCGCCTGGAGCATCAACGGAAAACCCATCACAGGCATAGACCCAACCCCTAGGCGTACTGTGAGAGATGGAGCTCTGATTCTGAGAGATGTGGTCTTCACTGATACAGCAGTCTACCAGTGTCAGGCCCACAACAAACACGGAACCATCCTAGTCAATACCTACATCTTCGTCATCGAACTGCCTCCTCAGATCCTGAATGCTGACGGACAGAAGTACAACTTCACAGAGGGACAGAAGGCTGTACTGCAGTGTCAGACCTTCGGCTCTCCCAGACCTAAAGTAACATGGGAGAGGAACAGCAGCGCTTCTCtactggctgagcccagggttaACCTGCTGACCAATGGAAACCTCCAGATCACCAACGTCTCCCACGGCGACGAGGGCCTGTACACCTGCTCCGTTAGCAACACCAACCTGTCAATCAACGCTGACCTGGATGTGCTGAacaggacAGTGATCCTGTCTCCTCCTGGGTCTCTGCTTGTTCAGCCTGGTAAGACGGCCATCTTTACCTGCCTGGCACAGGTGGACCCCAAACTGACCCCTCCGCACATTCAGTGGAAGAGGAGCGGACAGGAACTCTTTCAGTCATACGCCGAGGACAAGTACACATTTGAGGGCCCAGACCTGATTGTGGCCAATGTGCAGACAGAAGACGAGGGTGTTTACACCTGTGAGGTCATCACCAACCTGGACAGGGTTGAGGCCAGCGGGTCCATCATTATAGTCGACCGACCAGACCCCCCCACCCAGCTCCAGGTCTCTGACCCTAAGGACCGCAATGTCACCCTGAGTTGGACCGCAGGAGATGACCACAACAGCCCTGTCATAGtgtTTGTGGTGGAGTTTGAAGATGGTGACTCGAAGGAGCGGGGTTGGGAGGAGCTGAAGAGAGTCAGTGGAACTCATGAGAGCGTGACCATTTCTCTGCAACCATACGTGTCCTACCGCTTCCGGGTCATCTCCATCAACAACATCGGGAAGAGTGACCCCAGCATGCCCTCTGACCTTCACAGCACCCCACCTCAAGCTCCAGACAATAACCCAGAGAATGTGAGGAGTGAGTCTACAGACCCAGACACCCTGGTCATCACATGGGAGGAGATGGACAGGCGTGTGTTTAACGGCCCAGAGTTCCACTACAAGGTGTTCTGGAAAAGGGTGGCAGGTGACACAACCTGGTACTCTAATGTCTCCACTGAGCCACCGTACATCGTCACTGAAGTGGGCAAATTCTCCGCATTTCAAATCAAAGTTCAGGCTGCCAATCAGAAAGGAGAGGGACCTGAGCTAGACCCTGTGACTGGTTACTCTGGAGAGGACTTCCCCTTGAAGGCTCCTCAGAATGTGGCTATGGTGCTGCTCAACAGTTCAGCCATCAGGGTGACATGGGAACCAGTGAACGAAAAGACTGTCAGAGGACACCTGCTGGGATATAAGatCCATCTGCTGAGGTTTGGCTCCAGGGGCCACCACCAAGGCCGTAGGGCTAGAGAGCCAGACACCAGTGTTGAGGTGGAGACAGGGCccaaagaggagaagagagtccTGGGGGGACTCAGACCCTACTCTCACTACACCCTCACTGTCACTGTGTTCAACAGCAAGGGAGAGGGCCCCCCCTCCGAGACTCTGTCCTTTGAAACTGACGAGGGAGCTCCTGGCCCCCCGATGTCCTTACGCCTGGACAGCCATGCAGGCACAGAGATGACCCTACACTGGACACCTCCTGCCCAACCCAATGGGGTTCTCAAAGGATACCTGCTGCAGTACCAGATCGTAAAGAGTGACAGCCCGATGCAGGTGGAGACGATAGACGATCACAAGGTCACTCACCTGACCCTGAAGCAGTTGGACCCTCACAGCCGCTACCGCTTCTACCTGAGGGGGCGCACCTCGGCCGGGGACGGAGAGCCTATCACCAGGGAGGGGGCTACCACACTGGACGGAGCTCCTCCGTCCAACATCAGCTTGTATGTAGGAGAGAAGTCTGTTAACCTGAGCTGGGTGCCAGGCCAGAGACAGAGGAGTGTGAGCTTCCAGGTCCAGTACCTCAACAAGCAAGACGGTGGGAAGTGGAAGCAGTCTGAGAAGCTGAACTCGTCTGCATCATTCTACCAGCTGAAAGGTCTGACCCCGGGGTCACAGTACCGCCTCAGATTCACCTTCAGCAACAACACCTTCTGGGAGACTGAGATCACCACAAAGGGAGCAGGGGTGATGGATATGCAGACAGGCTTTGCTACTCAGGGCTGGTTTATTGGGCTCGTGAGCGCCATCGTGCTGTTGCTGCTGGTGCTGCTCATCCTCTGCTTTATCAAGAGGGGCAAAGGGGGAAAGTATTCAGtcaaagATAAGGAGGAGGGTCAGGTAGACTCTGAGGCGCGCCCTATGAAGGATGAAACATTCGGAGAGTACAGTCTTTGGACAAGATCTCTTGAGAGTGACAACGAGGAGAAGCGGACAGCCAGCCAGCCGTCTCTGTGTGATGAGAGCAAACTGTGTATCAGTGATGACAACCTGGATGGCTATAACAACGGTAGCATTGCTGTTACTGAGGTGACCATGGAAGACTCCCTGGTCAGCCAGTACAGCCGACCCAGCGAAGCCACCCCGGACCCGGGCACACTGCAGGACAGCTCCCCCCTCaatcccaacaccaccaccaatgGCCTGCCCAACTCGGCCGCCATTTTAGATTAGGCTAGTTAGTTAGAGGTGGCCGTTTTAGATAATCCCGTTGCCTTAGTAACTGTTTATCTGTTAGACCAAAATATCTCTGTCAACTACAGTATAACATGTCAACAATATAAACATGCCCACTGCCCACACACTCCTAGCTATCTCTAACACATCTATCTAGCTATCTACTTGACTGACTTTTCCATTGATAAGATCACTGACTGtatgatcaatatactactgaCCATTCAGAAGCatctgttattctacaatgttatCTATCTAgccatatacagtattatagatATGTACAACATGTTCattatgagttccagtgcctagTGGCCCTCAACACACAGCACCAGATTACATCCTTACtctagtcctctctcctcctctactctactcctctcttatCTACTCTACTCCCCTTTTAtccactctgctcctctctaatctactctactcctctcttatctactctactcctctcttatctact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU947272 lncRNA downstream 67864 66555053 ~ 66560056 (-) True G833015
TU947260 lncRNA downstream 100986 66526261 ~ 66526934 (-) True G833003
TU947241 lncRNA downstream 111921 66506278 ~ 66515999 (-) False G832991
TU947401 lncRNA upstream 18153 66769277 ~ 66769526 (-) True G833118
TU947716 lncRNA upstream 42141 66793265 ~ 66795448 (-) False G833350
TU947717 lncRNA upstream 42141 66793265 ~ 66794535 (-) True G833350
TU947722 lncRNA upstream 50343 66801467 ~ 66801991 (-) True G833355
TU947725 lncRNA upstream 80931 66832055 ~ 66832539 (-) True G833358
XM_036988733.1 mRNA downstream 8384 66597200 ~ 66619536 (-) True LOC110531241
XR_002474877.2 mRNA downstream 38555 66586609 ~ 66589365 (-) True LOC110532712
XM_036988732.1 mRNA downstream 84643 66522662 ~ 66543277 (-) True LOC118966098
XM_036988730.1 mRNA downstream 197003 66228457 ~ 66430917 (-) False LOC110531240
XM_021616786.2 mRNA downstream 480303 66127916 ~ 66147617 (-) False LOC110532692
XM_036988747.1 mRNA upstream 48917 66800041 ~ 66884524 (-) False LOC110531242
XM_036988746.1 mRNA upstream 48917 66800041 ~ 66884994 (-) False LOC110531242
XM_036988745.1 mRNA upstream 48917 66800041 ~ 66888393 (-) False LOC110531242
XM_036988750.1 mRNA upstream 48917 66800041 ~ 66888416 (-) False LOC110531242
XM_036988752.1 mRNA upstream 48917 66800041 ~ 66888416 (-) False LOC110531242
TU947288 other downstream 39240 66587412 ~ 66588680 (-) False G833029
TU947290 other downstream 39240 66587412 ~ 66588680 (-) True G833029
TU947289 other downstream 39579 66587412 ~ 66588341 (-) False G833029
TU947239 other downstream 116354 66508718 ~ 66511566 (-) False G832991
TU946914 other downstream 197151 66248103 ~ 66430769 (-) True LOC110531240
TU947907 other upstream 428125 67179249 ~ 67185243 (-) False G833521
TU947908 other upstream 428125 67179249 ~ 67182066 (-) True G833521
TU948136 other upstream 697327 67448451 ~ 67455400 (-) True LOC110531246
TU948836 other upstream 792026 67543150 ~ 67560577 (-) True LOC110532727
TU949074 other upstream 1277284 68028408 ~ 68038961 (-) True LOC110531249

Expression Profile