RNA id: XM_036988789.1


Basic Information

Item Value
RNA id XM_036988789.1
length 1734
RNA type mRNA
GC content 0.54
exon number 6
gene id LOC110532728
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 67587799 ~ 67603010 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAGCTGGACCGACATTGCAGAAGACTACCGACTGACTGGTCTACAAATAACCTTGCTTCATTAAaaactactcattattatttgtagatcagtcaatcGTTCACCATTTACCCACAATGCATCATGGACATGATGCTCTCAAACACGGCCATGGACTTTAAAGGCTAATAAGACATGGTTGAAAGTGCAAACAATTTCTGTAAGTATTTGTCTTGAGTACGCAGCTGTCACAAGCCGAATGAAATAACTAACGTGGAATCGTAGCCTAGTGTGTAATTGGGGGTTGATGTTGTAGTAGTCTGTCTCAAGGACGTGGAAATAGGAAGACAAACTCCAGTAGCGAGCGAGAAGGGGACTCGGATGaattgttagctaacgttacggaTAGCTTAGAGTGGATATCAAGTATGTCTTGACTACAAAATACGTATCAACATATCCACCGCAGTACACGATTTTCAGGCCTCGTCCAATGGAAGATGGTGTAGCTAGTTCCATAATCTCTAAAACTCATCTGACAGCTACGGCAAAAGGGGGATATTTTCTCGATTGAAGGGAATATATGGGATCGCAAGTTTCATCGGATGAGATGAGTGTGCGCGGGGGGCAGGGTAGTGACGAGGTGCTGGTGTCCCAGGCGGTGTGGGACTACCTGGCTGCCGCCGGCCAGCCCTGGCTCATAGACTTTCAGGACAAGCAGGGCTTGAGCGCCGGCATCATCCGCCGAGGTGAGCGGGGAGGCTGCTGTGCAGTGCGGCTACGCCCCATAGAGGGATCCCGTTCTGGGGGAGGACCCGGGATGATGGAGGAAGGACCCATCTCCAACGAGACCCGCAAGGCCTTCATAGACTTATGCCGCTGCGCCCGCAAAGAGATGAGCAAACAGGATGGGGGTCCTAAACGGAAGAGGTCCCTGCTGCCCTGCGTTGGGGTGGGGGtcctggagggggatggagaggggagccTGCTACCACCTCAGCCTCCCCAGCCCAGACGCTCTCAGAGGCAGCAACAGAGATATAAGAAGCCAGCGGAGGAAGAGGCCTGTGTGGTCCTCTCCAACTCCACGTCCCACAACGAATCCGGACAGAGGAAGAAGGACAACATGGAGGTCAGCTGCAGTATGATGGCCTCCTCTCATAACCAATCCCACAGTGAGGCAGACGACTACACCTCATGTTCCATCTGCATGGGCGACATGGTGGAGAGGACCACGCTGGAGAGgtgCGGCCACGCATTCTGCCGGTTGTGTCTAGACCAGGCCTTCAAGGTGAAGAGAGCGTGTCCTGTGTGTCGTCAGGTGTACGGCCAGCTCATAGGGAACCAGCCGGCTACCGGGTGTATGATGGTGGAGAGGGACCCAGATCTGGAGTTGCCAGGACACGAGGGTTATGGGTGTATCTGCATCATCTACAGCTTCCCACCTGGTTTACAggcgCCAGAGCACCCTAACCCGGGGGTGAGGTACCCTGGGACGGACCGCGTGGCTTACCTCCCAGACAGCCCAGAGGGGAACCGGGTCCTGGGCCTGCTCCGCCGGGCCTTCGAACAGCGCCTCATCTTCACCATAGGGACTTCCATGACCACAGGAATGCATAATGTCATCACCTGGAACGACATCCACCACAAGACCTCCTTATGGGGCGGACCACACTGCTTTGGATACCCAGACCCCACTTACCTGGTGAGAGTGACCGAGGAACTCAGAGAGAAAGGCATCGCTGCAGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU948865 lncRNA downstream 34198 67555492 ~ 67555799 (-) True G834315
TU948827 lncRNA downstream 76900 67512619 ~ 67513097 (-) True G834284
TU948826 lncRNA downstream 78393 67511030 ~ 67511604 (-) True G834283
TU948286 lncRNA downstream 130604 67458964 ~ 67459393 (-) True G833825
TU948280 lncRNA downstream 131726 67458065 ~ 67458271 (-) True G833823
TU948833 lncRNA upstream 14387 67617397 ~ 67618114 (-) True G834289
TU948882 lncRNA upstream 17243 67620253 ~ 67620459 (-) True G834332
TU948847 lncRNA upstream 19337 67622347 ~ 67625930 (-) True G834299
TU948885 lncRNA upstream 31046 67634056 ~ 67634467 (-) True G834335
TU948889 lncRNA upstream 36887 67639897 ~ 67640185 (-) True G834339
XM_036988787.1 mRNA downstream 29425 67543067 ~ 67560572 (-) False LOC110532727
XM_036988783.1 mRNA downstream 134336 67327762 ~ 67455661 (-) False LOC110531246
XM_036988784.1 mRNA downstream 134336 67327762 ~ 67455661 (-) False LOC110531246
XM_036988782.1 mRNA downstream 267619 67298005 ~ 67322378 (-) True LOC110532725
XM_036988781.1 mRNA downstream 267620 67298005 ~ 67322377 (-) False LOC110532725
XR_005053328.1 mRNA upstream 8122 67611132 ~ 67613318 (-) True LOC118966100
XM_021616843.2 mRNA upstream 25727 67628737 ~ 67633978 (-) True LOC110532730
XM_036988800.1 mRNA upstream 192047 67795057 ~ 67894811 (-) False LOC110532733
XM_036988795.1 mRNA upstream 192047 67795057 ~ 67903396 (-) False LOC110532733
XM_036988793.1 mRNA upstream 192047 67795057 ~ 67904020 (-) False LOC110532733
TU948836 other downstream 29420 67543150 ~ 67560577 (-) True LOC110532727
TU948136 other downstream 134597 67448451 ~ 67455400 (-) True LOC110531246
TU947907 other downstream 404754 67179249 ~ 67185243 (-) False G833521
TU947908 other downstream 407931 67179249 ~ 67182066 (-) True G833521
TU947290 other downstream 1001317 66587412 ~ 66588680 (-) True G833029
TU949074 other upstream 425398 68028408 ~ 68038961 (-) True LOC110531249
TU949318 other upstream 772648 68375658 ~ 68376157 (-) True G834676
TU950434 other upstream 1376873 68979883 ~ 69056680 (-) False G835608
TU950419 other upstream 1422035 69025045 ~ 69025857 (-) False G835608
TU950420 other upstream 1422035 69025045 ~ 69058294 (-) False G835608

Expression Profile