RNA id: XM_036988801.1


Basic Information

Item Value
RNA id XM_036988801.1
length 8887
RNA type mRNA
GC content 0.51
exon number 38
gene id LOC110532734
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 67930820 ~ 68027791 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGCGATTCTAGTACAGAGATCGCGTGACCGTTAATATTTGCCTTTGGTGAATTCTCCCTCTTATGGCGGAGGGAGCAGTCGGCGCAATGGATTGTCACTTCAATTCAAATGCATATTTCGTGTTTTGAAGGCAGTATTTTGAAATAGAAGAGATTTCGTTTTTACTTAAAGCACACTTTGTTGTATTCTTTTTACGTCATGGCGGACCGTGGCGTGGATTTTTCCGGTATACCGAAAGAGGTTCGAGACCATTTGGCGGAGTTGGAATTGGAGCTATCGGAAGGTGACATCACACAGAAGGGCTATGAGAAGAAACGAGCCAAGCTGCTGGGCCCCTTCCTCCCTCAGATCACCAgtgTGGTACTGGCTCTCCCAGACATCCAGCAGCAGGCGTCCTCTGGCCCATCCAGTGGTGAACCCAGCCGTGACTGTAGCCCTGCCAGTCCTGAGGCCCCTGGCCCCTCGTCTTCCTCTGGGGGGCGCAGAAACCGCAGCGGTGGGACCAGGGACGACCGTTACAGATCAGatatCCACACGGAGGCAGTACAGGCAGCGTTGGCCAAACACAAGGAGGAGAAGATGGCACTGCCCATGCCCACCAAGCGCCGCTCAGCCTTCGTCCAGTCACCCGCAGAAGACTGCACCCCTCCAGACACATCGTCAGCGTCTGAGGACGAGGGTTCCCTGCGTCGCCAGGCAGCTCTGAGTGCAGTGCTGGTCCAGAGTCTCCAGAGCCCAGACTACTGGATCAACCGCTCAGTGCAGagttcctcctccacctcctcctccacctcctccaccctgTCCCACGGAGAGAATAAGACCCCCACTTCCGCACTGGCCGACATACTAGCGAGCACACGCATAgAGAACAGTGTCCCCCCAGACGTGACATCCTCAACCCCTGAGAGGCGTTCAAGGGTGGACTCTAGGGTGGACCTGCCCCCCAATGCTATGCCCAGGGGGATGCCCCGAGGACAGAGCCGCACCAGCATGCTGGATACCACCGCTGACGGTGTACCAGTAAACAGCCGTGTTTCCACTAAGATCCAGCAGCTACTCAACACTCTGAAACGGCCCAAGAGACCTCCGCTCAGTGACTTCTTCCTGGACGACTCAGAGGAGATCGTAGAGGTACCCCAGCCGGACCCCAACACCCCCAGGCCAGAGGGCCGTCAGATCATCCCAGTGAAGGGGGAGCCCCTGGGTGTGGTCAGTAACTGGCCCCCGGCCCTGCAGGCTGCCCTGGCACGTTGGGGGGCTTCACAGGCCAAGAGCCCCGCTCTCACCACCCTGGACGTTACCGGGAAACCCCTCTACACGCTGACGTACGgtaAACTGTGGAGCCGCAGTCTGAAGCTGGCCTACACTCTGTTAAACAAACTGGGCACGAAGAACGAACCTGTCCTGAGACCTGGAGATAGGGTGGCATTGGTGTACCCTAACACTGACCCTGCGATGTTCTGGGTGGCCTTCTATGGCTGTCTCCTAGCAGAGGTCATCCCTGTCCCCATAGAGGTGCCACTGTCCCGACAGGACGCAGGCAGTCTGCAGATTGGCTTCCTATTGGGCAGCTGTGGGGTGGGCCTCGCCCTGACCAGTGAGATCTGTCTTAAAGGACTGCCCAAGACTCCCCAGGGAGAGATCATGCAGTTCAAAGGTTGGCCCCGTATGAAGTGGGTTGTGACAGACACCAAGTACCTGACCAAGCCATCTAAAGACTGGCAGCCCCACATCCCCACCGCCAACACAGACACAGCTTATATCGAGTACAAGGCCAGTAAAGAGGGGACGGTGATGGGAGTAGCCGTGTCTAAGATAGCCTTGTTGACACACTGTCAAGCCCTGACACAGGCCTGCAACTACTGTGAAGGAGAAACATTGGTCAATGTCCTTGACTGTAAGAAGGACATGGGCTTGTGGCACGGGGTGCTAACCAGTGTCATGAACAGGATCCACACCATCACTGTACCTTATGCTGTCATGAAGGCCTGTCCCATGTCCTGGGTGCAAAGAGTCCACATACACAAAGCACGTGTAGCCGTGGTGAAGTGTCGTGACCTCCACTGGGCTATGATGGCtcacagggaccagagagacacCAACCTGTCCTCCATACGCATGCTCATAGTAGCTGATGGAGCCAACCCCTGGTCTGTGTCGTCGTGCGACGCCTTCCTCAACGTGTTCCAGTCTCACGGGTTAAAGCCGGAGGTCATCTGCCCCTGTGCCTCCTCTCCTGAAGCTCTCACTGTGGCTATACGCAGGCCTGGTGCTCGGGGTACAGCCCTCCCTGCCAGGGCCATTCTCTCCATGGGCGGGCTGAGTCATGGGGTCATCAGGGTCAACACAGAGGACAAGAACTCTGCCCTCACTGTACAGGACGTAGGCCATGTGATGCCTGGAGCTCTGATGTGTATTGTGAAGCCAGACGGGCCTCCACAGCTCTGTAAGACCGACGAGATCGGAGAGATAGTGCTGAACTCCAGGGCTGGAGGAACCTTGTACTACGGTCTACCTGGAGTCACCAAGAACACCTTCGAGGTGATTCCTGTGAACCAGGCTGGAGCTCCGATAGGAGACATCCCCTTCACTAGGACTGGCCTGCTGGGCTTCGTAGGGCCGGGAAGTCTGGTGTTTGTAGTGGGGAAGAATGAGGGGCTCCTGACGGTCAGTGGTAGACGACACAATGCTGATGACTTGGTGGCCACAGCCCTGGCCGTGGAGCCTGTCAAAACTGTCTACAGGGGGAGGATCGCCGTGTTCTCAGTGACCGTGTTTTATGATGAGAGGATTGTGATCGTAGCAGAACAGAGACCAGATGCCAGTGAAGAGGACAGCTTCCAATGGATGAGCAGAGTGCTACAGGCTATAGACAGTATCCACCAGGTGGGTCTGTACTGCCTAGCCCTGGTCCCAGCCAACACGTTACCCAAGACACCACTGGGAGGGATCCACATCTCTGAGACCAAACAGAACTTCCTAGAGGGGAACCTGCACccctgtaacatcctcctctgtCCACACACCTGTGTTACCAACCTGCCCAAACCACGGCAGAAACAACCAGTTGGAGTGGGCCCGGCCTCCATCATGGTTGGTAACCTGGTAGCAGGAAACAGGATGTCCCAGGCTGCAGGCAGAGAGCTGGGCGTGGTGGAGGAAGAGGGTCTGGTCAGGAAGCTCTGTATGTGGCCCACCATGATGCACCAGTTCCTGTCTGAAGCGCTACAGTGGAGAGCCCAGAGTGACCCTGACCACGTCCTGTATGTGCTGCTCAACGCTAAGGGGGCAGCAGTGTGCACAGCCACGTGTGTTCAGCTGCACAAGAGAGCAGAGAAGATAACCTCAGccctgatggagagaggaggcctCAACACTGGGGACAACGTAGTGCTGCTATACCCCCCTGGCATTGATCTGATAGCTGCCTTCTATGGCTGTCTGTATGCTGGGTTGATCCCTGTAACAGTGCGGCCCCCTCACCCCCAGAACCTGGCTGCTACCCTGCCCACCGTCCGCATGATCATCGACgtgaGTAAAGCTGCCTGTATCCTAACCACCCAGCCCCTTATGAGGATCCTCCGGtccagagaggctgctgccagcGTCAACGTCAAGACCTGGCCCACTATCATAGACACAGATGACCTCCCCAGGAGGCGGCCCCCCCAGCTCTACAAGCCCCCCACAGCAGAGATGCTGGCCTACCTGGACTTCAGTGTGTCCACCACAGGAATGCTGACCGGGGTCAAGatgtcCCACTCGGCGGTCAGTACTCTGTGTCGCTCCATCAAGCTACAGTGTGAGCTCTACTCCTCACGCCAAATAGCCATCTGTCTGGACCCCTACTGCGGCCTAGGCTTCGTACAGTGGTGCCTCTCCAGtgtgtactcgGGTCACCAGTCCATCCTGATCCCTCCTATGGAGTTGGAGCTGTCCTTACCTCTGTGGCTGAGCACCCTGAGCCAGTACAAGATCAGAGACACCTTCTGTTCCTACTCTGTCATGGAGCTCTGCACCAAGGGCCTGGGCACACAGACTGACTCTCTCAagGCGCGGGGTGTGAACCTGTCGTGTGTGAGGAGCTGTGTGGTGATAGCAGAGGAGCGTCCCCGGCTGGCACTGACCCAGTccttctccaagctgtttaaagacctGGGCCTCTCCCCCCGTGCTGTCAGCACAGCGTTTGGATCCAGGGTCAACCTAGCCATCTGCTTGCAGGGTACAGCTGGACCCGATCCCTCCACCGTCTATGTAGACATGAAGTCCCTCCGCCATGACAGGGTGAGGTTGGTGGAGCGAGGAGCCCCACAGAGTCTTTCCCTCATGGAGTCAGGCACTATTCTTCCAGGGGTGAAGGTGATCATCGTGAACCCAGAGACCAGGGGTCCGTTGGGGGACTCGCATCTAGGAGAGATCTGGGTTCAGAGTCCCCACAGTTCCAGTGGCTACTACACCATCTATGGAGAGGAGAGCTTGCAGGCGGACCACTTCAACACGAGGCTGAGCTTCGGGGAGCCCCACACCCTGTGGGCCAGGACGGGATACCTGGGCTTTGTCAAGAGGACAGAGCTACTGGGGTCCACCGGAGATCGTCATGACGCTCTGTTTGTGGTGGGCCAGCTGGATGAGACGTTGGAGCTCAGGGGGCTTCGCTACCACCCCATCGACATCGAGACCTCTGTGTCCCGGGCACACCGCAGCATCGCTGAGAGtgctGTGTTCACGTGGACCAACCTCCTGGTAGTAGTGGCAGAGCTGGCCGGGTCGGAGCAGGAGGCCCTAGACTTGGTGCCTCTGGTGACCAACGTGGTTCTGGAGGAGCACCACCTGATTGTGGGCGTGGTGGTTGTTGTTGACCCGGGGGTCATCCCCATCAACTCACGGGGAGAGAAGCAGAGGATGCACCTCCGGGACTCGTTCCTGGCCGACCAGCTGGACCCCATCTACGTGGCCTATAACATGTGAGGAGGGCCCAGGCCCCATTCACACTGGGGTGGAGGCTGGCTGTGGGGGTCCACTGGAGTGGAGGCTGGCTATGGGGGTCCACTGGAGTGGAGGCTGGCTATGGGGGTCCACTGGAGTGGAGGCTGGCTATGGGGGTCCACTGGAGTGGAGGCTGGCTATGGGGGTCCACTGGAGTGGAGGCTGGCTATGGGGGTCCACTGGAGTGGAGGCTGGCTATGGGGGTCCACTGGGGTGGAGGCTGGCTATGGGGGTCCACTGGAGTGGAGGCCGGCTATGGGGGTCCACTGGGGTAGAGGCTAAAGTATAGAGGCTCTGAGAGGGAGGTGCTAGACACAGAGAGGGGGCTGGGGGGTGGACTGCTTCTCCCAAGAATGGACCTCACACTCACTCATCTGGCAGTGGGACAGAttggcaggacagggcaggagtAGCATTGGTGGATGGGCTTGGACTTGGTTTAGCCATCCTGTTAGAGTAATTCCTGCCCCAGTGTTCTTTTTCTCTCGGCCAGAGTCTACTCTCTATGAAACAGAGACTGTTTATTAAGTCTGTGGGTGGAAGTGAAGTTAGAGCATGTCTGTCTGCATGGGGTTTTGCTGCTTCTTAATGGTGCTTTTCCAACCACTCCCTGCCTCCCACTGACAGAGTAGGAAGATGATTGGTTTCTCCTCTTTGATTGACACTTGGGTCCACCTATCAAGTAGATGTTTGCCAATACCCTCATCCACTGTCTCTCCCCGACTGCTCCTAACCATGATTTTATCCCCAGACATTATTATTGTGAATCTTGTTTTATAGAAGAAAATACAGAGGTGTGTTTCTCATCTCGATCCATTCCCTGGTTCAGCCTGtaccctgctctctcctctctcctgagtGGTCCACAGTCCGTCATGTTGGTCAGGATAGGACTGTGTGGAGTCAACGTGACGAGCTGGAAGCTTCCCCCATGCACTTTAACCTTTCCTTGTCCTTCCATAATCTCTCCTAGCCTAGTCCCAGTTTATGGGACTAGTTTATGCAGATCAACTCCTCATGAGACAATGACCAAAGGAGTTGGAAAGACCTGGGACCATGCGTGCTGTACGTCCCAAAttacaacctattccctatatagtgtactaccctatgggccttggtcaaaagtagtccactaaatagggaatagggtgctatttgagccGTAGTCTATATGTCCCCTGGATTGTCGATGGGAGACTCACAAATTGGCTTCCGCCGGTGCTACCGCAATGCAGAGGACTGATCTTTAAAATTGGTGTTAGATTTAATTGACTTATATGGAACTAAAAAGAGGTCATAAAATACAAACTTGCTAATGAACCTAGCTCAGTATGGTTGACCTCTACTCACTTCCATTTTTCATCAAGAAATGCAGAAGAACTAAACAATATCACAAACAATACAATAGCAGCAGTAAGTACAGCCCACTGAGTCAGACAAACGCCTGCACCTCAGTAGCTGTACTTACTGCAGAGCTGGAATTGACCGGTCATCTTACGTGTCTGTCCCATAGATCTCGGTTGTTGTTTTTTACACTTTACTGCTATGTTAAACGCTTTTAGACGTGCTAGAAGAATCCACTTTTAAAACACACTTGTCATTGGTATGGAATGAAACAGATGTGCAACATAAACATACCAGCAGCAAACTCGCACAACAAAACAGACCGTGTTTATTTTTGGGGGACAATATTTTAAGGTCTTGATGTATGAGCAGGAATCGTTCCATGAGAGTGCTCTCATCGATCATGTAAATAAAATGGACTTCTGTTTTTACTGCTGTTTTATGGGGTCAGGGTTATATGTATGTACAGACATACGACTAAACTGCTGTACATATTTATCTTTACACAACTCTATTTATCGTCATTATTTAAATATCTAGCAAGCACAAAATACTGATAATATGGAACAATAAACTTCTGATTAACTTGCTGGCTGACCTGATATCATGGAGGCTCCTCTGCTGAATCACTATCTTAGCTTGAATAAGtatcagtcagtcagctgctggCCTCTGTCACAGGCTTTCAGATGGCAAAGCCTTGGGGTCCGTGGCTAGTCAATTGCTAGGCTTGTTTGTTGATTCTGGAGTGCCCATTGAGTCACCAAGGTGCATCTATATCTCTGACTAACTTCACATGAGGCTACATCTGGGATGTCGGAAGACTGCTGTGCctttaaatgtggaagacacatttcagttgaatgcattcagttgtacaactgactaggtatcccctttccctttgtATTGTGCCATCATGAAACGTGACATCTTCATAAATCAAGGACTTGGTGAACTACCAAACCCAGTTGGCAGTGGGTATAAGATGAGGACAAATTATTGCCTTATAAAACCTGTGGAACTTGTAATACTTTTACTGTTATTATTTGTCAAAGGTTTTAATTTCATTATTCTGATTGTATTATGACTAGAAAAGGGATTGTGAAGGGTAAGATGTTGACCGTATAGGGTATATTTTAGAGGTCAAAAACTGTATAACTGGTGTTACTGTGTACATTGAAATTATGAACTTGTTCTTTGTTCATAAAACTTGACTGATCTTTCATACTTGACAGCAAATTTCTGCATCACAGACTTAAACGTAGGCTAAGTAACACATTTCAAAATTAAAGGAAGCATATCATATGGTTTGGCAGGTGGTAACAATTTGCACTTTTCCATATCATTATTACTGGTGTGTGTGATCGTATGGTTTAAATGGTGACATCGTTTGCCTTTCCTTGTGGAAAAAAGTTTCATTTCCCTTTTTAATTAAATGAACATCAAAATATTAAACAATATTTTTGTTCCAAAATGACAGTTTCTTTTTTGTTGATTGGCTTATTTTATGTCATTCACTGTAATGTAATTTTTAGGGGTTGACTCTAGCAGGACATCCCAAGGATCCAGCCTAGCATCAAACTATTTTTATTCCATCCATCCAAATGAGAAATTCATTATTTAAATGATTGTAATGTTTTTCATGCTAGATTTCAACTACCCTACACAACGCTGTGGCAAAACAAAAGCCTTGTTTGATTTAGGAAGTTGTTAAAACTACTTGAATGACAAACATTGTAACTTAAGTCCATCTTTAGAGTAAAGTTACATTTAAtgattcataaaaaaaaaaattgggactATTCTGTGGTATTTGGCTTTCTTGCCAAGCTGCTACTGTATCATTCCACCTTTGCATGTTTAAATCATCATCTTATCTTATAGTGGTGTGACCATAGAACTAGAAGGAATTTACCACTCAATCTTCATGGTGTGAGCGGTTCCAAGCCCGTTCTACTCAATCTAATTCCATGGGTGTGACAACATGTTGTCCTGCCATACATTCATTAGACACATTGGTGCTATCCAAAACTGGAAATAAGGGGAAAGTCTTTCAAGATTCTATCCATGGAAAAACCTAGCTTGAGTTCCAGCCTGTTTGTACTATTGTGCCAGCTCCAATTGGCAAAAGCACAAACCGGTATAGGACCAGGCAAGGACAAATGATCAGGATTGCCAATATTTCCATATATTTTGTAATAAACACTGTGCCAATTGCAGTAAAACTGAAAACAATAAAGGATGTTAAGCTTTTAGTCTATTGTAAGCACAATGTACTGTACTTGTGTAGTGCTAAAACAATATATTTCGGATGATTAATGTTATTTGTAAACATCAAGggcccaaaatatatatatacctcaAGGCTGTTCACTATGCATAAATGCTGTACAAGATCTTCTCAATATTGTCAGTGATGCAATGAGTTCCAACTCAGAGGCAAACGTGTCCTATTTGACCAACGTTCTGTCATGTTGTCAATGGGGATCATTTGTTTTCTATTTGGTTTAGCAAAATGAAACAATAAAAATCTGCTTTTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU948979 lncRNA downstream 113207 67816739 ~ 67817613 (-) True G834409
TU948917 lncRNA downstream 137463 67791089 ~ 67793357 (-) False G834361
TU949108 lncRNA upstream 33461 68061252 ~ 68061577 (-) True G834515
TU949182 lncRNA upstream 189254 68217045 ~ 68233316 (-) True G834580
TU949159 lncRNA upstream 218748 68246539 ~ 68252815 (-) True LOC110531251
TU949204 lncRNA upstream 227965 68255756 ~ 68256003 (-) True G834600
TU949207 lncRNA upstream 230034 68257825 ~ 68258113 (-) True G834603
XM_036988793.1 mRNA downstream 26800 67795057 ~ 67904020 (-) False LOC110532733
XM_036988796.1 mRNA downstream 26800 67795057 ~ 67904020 (-) False LOC110532733
XM_036988797.1 mRNA downstream 26800 67795057 ~ 67904020 (-) False LOC110532733
XM_036988799.1 mRNA downstream 26800 67795057 ~ 67904020 (-) False LOC110532733
XM_036988795.1 mRNA downstream 27424 67795057 ~ 67903396 (-) False LOC110532733
XM_036988804.1 mRNA upstream 1086 68028877 ~ 68079898 (-) False LOC110531249
XM_036988803.1 mRNA upstream 1086 68028877 ~ 68079899 (-) False LOC110531249
XM_036988807.1 mRNA upstream 96697 68124488 ~ 68136583 (-) False LOC110532737
XM_036988806.1 mRNA upstream 96697 68124488 ~ 68138733 (-) True LOC110532737
XM_021616851.2 mRNA upstream 111024 68138815 ~ 68151033 (-) False LOC110532738
TU948836 other downstream 370243 67543150 ~ 67560577 (-) True LOC110532727
TU948136 other downstream 475420 67448451 ~ 67455400 (-) True LOC110531246
TU947907 other downstream 745577 67179249 ~ 67185243 (-) False G833521
TU947908 other downstream 748754 67179249 ~ 67182066 (-) True G833521
TU947290 other downstream 1342140 66587412 ~ 66588680 (-) True G833029
TU949074 other upstream 617 68028408 ~ 68038961 (-) True LOC110531249
TU949318 other upstream 347867 68375658 ~ 68376157 (-) True G834676
TU950434 other upstream 952092 68979883 ~ 69056680 (-) False G835608
TU950419 other upstream 997254 69025045 ~ 69025857 (-) False G835608
TU950420 other upstream 997254 69025045 ~ 69058294 (-) False G835608

Expression Profile