RNA id: TU949074


Basic Information

Item Value
RNA id TU949074
length 4884
RNA type TUCP
GC content 0.41
exon number 3
gene id LOC110531249
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 68028408 ~ 68079899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACGGCAGCGTTTCCTGGAGCGGAACCGGGCAGCCGCCTCGCGCTGCCGACAGAAACGCAAAGTCTGGGTCAACTCCCTGGAGAAGAAGGCCGAGGAGCTCTCCTCCATGAACGTCTCCCTGGCGAATGAGGTGTCTCTACTGAGGAATGAGGTGGCTCATCTCAAACAGCTGCTGCTGGCTCATAAGGACTGCCCTGTCACCACTCGACAGAAGAGTATGGGAGAAGACAGCATAATGAAAGACATGTCGGAGCCCACCGGCTCCACAGCACCCGTCATCCAGCACAGCTCCCTGCCCAGTCCCTCTCCTTCCTCGGGCCCCAACGGCATAAGGATCCGGGCGGCCGCCGAGGCCATGTCTGTGCTGGCCAGGATGGGTCaacaccagcagcaccagcagaggagagaagagagggatggagggagagacgtgAGGGATGGACCCTCCTCCCACATCATCATGGCCACACATTCGCACCACTCTGCCAGATGATGAGCATATCACACACCACAGCCCGGGACTGTACGGCTCACACAGCACCAGGCACCACCCTACATGGGCAGGAGGAGAGCACAGGAGAGGGTAGTGGAGGAAGAGAGCGACTCAAAAATAAGTCATGCCTTCCTAGTCAAATAAACCTTCTCAGGTGAGCAGAGGAGTAGTTACATGATACaatcctccctcctctactctctgccCATGCTGTGTCAGCCACTTTTGTGTCAGGCCTGGAGCCTTGCTGAAGCTCAGCAACAACAGCCTTCTGGGAATAGACCGGGACGATAGAAGAGGAAGAGCTTCTTGTTCTGTTCAATATGCCATATATAGACTATGTACAGGGGCTGGACTCAACACCCCTCGTATTCCCCCCTACAACCCTCTCGCCTTGCCTCAGCCTCTATGAACTTCACTGGACTGTAGGACTGCATAGCATCGTCCCAAGTGTCGTAACTGTCATTGTGATAAACTCGGACACTCAGACTCTAacacacggtaacacacacatACCAGACACATATACTCAGCGTTAACATTGAATTGATTCGTGTTTGTTTTTCATCAAGTGATATACCAAATCCCTGATCACTGCAGGGGTCCATACTATTGTAACAGGGGGTTGTGGCCTTGCTCTCCTGCACATGTTGACACGTTTTATTCACACACAAAAATGGGTTTTAATGATTGAAGCTCCAACTCCATAGATGCAATAGTTTTGTATACTCTAAAATATTTTCAATTTGATCTGTTGAATCCCTAGCAGTTTTGTAAGCGATTTTCATTGAGGATCTGTCGCAGTTGTTCACGAAAAAGCTTGACCTTATTTTTTTGCCcttttataatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatatgtatgtacatCAAGCAGTTTGTTGATTCAAGGTCTGATAAAACAAGATCTGGTTTGGTAGCATTTGACATCTTGTTATATTAGCGTCTTTGTTGTATTCCTGTGCAGCTTTCTTTTACATCTTGTTATATTAGCGTCTTTGTTGTATTCCTGTGCAGCTTTCTTTTACAACTTGTTATATTAGCGTCTTTGTTGTATTCCTGTGCAGCTTTCTTTTACATCTTGTTATATTAGCGTCTTTGTTGTATTCCTGTGCAGCTTTCTTTTACAACTTTATCGGCACATTACTATTTGCAGCTTGGACCATAGAGAACCAAATGATCTTCTGTGTGGCAGAAATGGAAAGCTAAAAATAATGTATTTAGTGTACACTCATTTACAAATGATTTATACACTTAAGTGTTTTTCAAAGAAAAGCTTTTCACTTTTAGCTTCAGAATTTCTTTGGGACTGCATCTGACTAAACAAATCCGACCTCCTGTCCTCTGTCTAACCATTTCCTCTTTCCCGTgcaatttttgtatttatttagttctAAATGTATGTCATTACCATCTTTTATGAAATCTTATCTGATAGGAAAAGCTTTTTCTAACTGGCCTTTGTCGCCCTCGTCTGTTTTCTGAACCTTCTGGAGGTGGTACCTTTTTAGTGCTTCAACCTTGCTGCTTTCTGGAGCGTGATGGGCTGCTCTTAAGTCTCCAGGGTCGCGTTCATTAGGTACCAAACAGGACAAAACGGACTGAAACAACAAGGCACGTGCTCATTTTCGTTTGCCGTTGCAAAAAGTTATGAAACGTTTTCCATTGAGTGCACTAATGAACACAAACCTGGCTGTTCTTTATTAATGACTCTATCCAAAACAAAGCCATGTTACTCTAGCcgagcgtgtatgtgtgtgtttttacaaACAGCACTGACACAtctggactcacacacacatcgtTTGAAAACGATTTTGCCTTAAAGAATCCCTTTCGTGCCTCCGACAACCCTATCAAAGATTGGGTTGCGTGAAAAAACCTTATGGTTCTGGCTTAGGAGGAAAAAAAATGTTTCAGAAATGAAAAGCCATTAACAATGGGGTAACAACtgattagttttttttttttacatggtgaGAATGTTTCGTATTGTAGATGTAAAATGTCACCATGGCGTCTCACCACATGATCATTGTGGTGTGTTGtacactgccatctagtggagtAATTTGACCTTCACCTTCTCTCACAAGGATGGGACATTGAACTTTGAGGGAAATTCCTTCAGAACTCCTATGGCAGTCTCAGAACAGTTTAAATTCTTCAGGGATCTCCCCCCTATTTAGTTTTAGACATTTTGTTTTTAGAAAAACAAACCACCTAAACAAGTGATTCATCTTGTTTTGTATTGGTTTAGAACTGCTCCCACCATCTAATGTATGTGTAACCATTTGCAGTGTTTAATCCTGCAGAAATAACTAGGGTATCAGTCCCAAAAACATAAGCGCATGTCTAAATGCACTAAAATATGCAGGTTTATCGTTCAttattttccttttttctctctttttgtgTCAACTATGGTTTGTCCTGAATACAGGTTCTCTTTCAGTAACATCAAAAGTTTGCTATTTCTTTTGTCTTCATAATGTATTTTATACATAATGGGACTGGTTCCGGATCCAGATTTAAGCCTAGTTCTACACTAAAAAGcatgttcaatggagattctctatTGAAGGTACTTCTTAGTCCAGCGCTAGATTCAATCTGTGTTCAGGAAACTGGCCCAACAAGAATTGCCACTCAGTAACTACTGACACATCTCACATAACTGAACCTCTTTGTCATTGTACCACAGTCCCAATggtacaccctattccccattttattacactacttttgaccagggctctgtactatatagggaatagggtgcgatttggtaTGCTACCCTACAGTGACCGTCCCAATGGTGACCCTGTCAGGCGTTGTGTAGTACTCTGAGCTGGCACTAGCTAGCTGTCCCTTTTATAAATAGACGATTGTTCATATGAAATGGAAAAAACTCAACTTTATTTAGCTTTCATGTCAGTTAATTGTCATTGGCACTTTGTTCGTTCGTTCTTTTTTTTCCACTTTTTTCTCCAATATTTTTTTAATTGCGTGCTATTGTCACGAGGACTATATAGAAATACTCTGGCATGATAAACGCTTCCTCTGTTATATATTTTTGTGTTGTAATGATAAGATATAGGAATGTATTTGTTTTAGTACATCAATGTCTTTTCGTTTTTTTTCCTATCAAAAAGGCTTAGTGTAACCCAACAGCCGGACGACGCCGGAACCATAGAACTGGAATCATGATTCTACTCCCATGGCTGGAAACTCTGCTCTGTCTGGACTGCCTGTTACTCACAATAACTTACTGTTTGTTACATTGTCTTcatggaattttttttttttttttttttacccctctcAAAATATGAACAGTTGTTGTGAGCAAGTAACAGAATTGTGCAAGAAAAATAACAATTTTACCTATGAGAAGacaatttgttttgtatttacaTTTTTCATTCACACTCCCATAAAATAATTGTTGGACTGATCATTTTTTAAATTGTCCTtattgtactgtacatatctGTACTAGGCTATATGAATATATTTACTTTTCCATGCATGTCGAAGTGAAACTACTATGAACACTTACCGTGCTGCAGCTTTAATTAAACAAATTACTTAATGAATATCAAACGTTTCTGTAATATTTGATTTAGACAATTTAACACAATAGATTCTCTCAATTCATTTCAATCTCAATTGaaggggttttattggcatgggaaacatatgtttacatcgcCAAAGAAAGTGAAATGGATGATAAACGAAAGTGAAATAAACactaaatgaacagtaaacattacactcacaagttCAAAAGGTTTAGAGATGTTTTGAATGTCATTgtctatacagtgttgtaatgatgtgcaaatagtgaaagtacaaaagggaaaataaatatgggttgtatttacaatggtgtttgttcttcactggttgcgcttttcttgtggcaacaggtcacaaatattgctgctgtgatgtcacacggtggtatttcacccagtagatatgggagttaagccaaatttgatttgtttgtgggtctgtgtaatctatgGGGAGTgtgtctaatatggtcatacatttggcaggaggttaggaagtgcagctctctctgtgtgtgttacatGTTCACTTAAATGAGTTCTCAATTCTTCCTTTCCCTGTACTGAAGATCTTTGGCCAACTAATCTGTACAGTCCTTACTTTATAATTACTACATGCATGCTTGCCACGCGTTGCCATCTGTAACTGCATCAGCGATGTACTGAGGACAATAATGAGAGCATCAACATCAAGGATAAGAGTGACATTTTTCCTGTCTCAGAAACAGACTAAGGTGGTTACTTGGCATGGGCCAGTGCGCACGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU949062 lncRNA downstream 56966 67968766 ~ 67971442 (-) True LOC118966101
TU948979 lncRNA downstream 210795 67816739 ~ 67817613 (-) True G834409
TU948917 lncRNA downstream 235051 67791089 ~ 67793357 (-) False G834361
TU948919 lncRNA downstream 235051 67791089 ~ 67793357 (-) False G834361
TU948920 lncRNA downstream 235051 67791089 ~ 67793357 (-) False G834361
TU949108 lncRNA upstream 22291 68061252 ~ 68061577 (-) True G834515
TU949182 lncRNA upstream 178084 68217045 ~ 68233316 (-) True G834580
TU949159 lncRNA upstream 207578 68246539 ~ 68252815 (-) True LOC110531251
TU949204 lncRNA upstream 216795 68255756 ~ 68256003 (-) True G834600
TU949207 lncRNA upstream 218864 68257825 ~ 68258113 (-) True G834603
XM_036988801.1 mRNA downstream 617 67930820 ~ 68027791 (-) False LOC110532734
XM_036988802.1 mRNA downstream 617 67934731 ~ 68027791 (-) True LOC110532734
XR_005053329.1 mRNA downstream 56963 67967813 ~ 67971445 (-) False LOC118966101
XR_005053330.1 mRNA downstream 56963 67967813 ~ 67971445 (-) False LOC118966101
XR_005053331.1 mRNA downstream 56963 67967813 ~ 67971445 (-) False LOC118966101
XM_036988807.1 mRNA upstream 85527 68124488 ~ 68136583 (-) False LOC110532737
XM_036988806.1 mRNA upstream 85527 68124488 ~ 68138733 (-) True LOC110532737
XM_021616851.2 mRNA upstream 99854 68138815 ~ 68151033 (-) False LOC110532738
XM_021616852.2 mRNA upstream 99854 68138815 ~ 68151033 (-) False LOC110532738
XM_021616853.2 mRNA upstream 99854 68138815 ~ 68151033 (-) True LOC110532738
TU948836 other downstream 467831 67543150 ~ 67560577 (-) True LOC110532727
TU948136 other downstream 573008 67448451 ~ 67455400 (-) True LOC110531246
TU947907 other downstream 843165 67179249 ~ 67185243 (-) False G833521
TU947908 other downstream 846342 67179249 ~ 67182066 (-) True G833521
TU947290 other downstream 1439728 66587412 ~ 66588680 (-) True G833029
TU949318 other upstream 336697 68375658 ~ 68376157 (-) True G834676
TU950434 other upstream 940922 68979883 ~ 69056680 (-) False G835608
TU950419 other upstream 986084 69025045 ~ 69025857 (-) False G835608
TU950420 other upstream 986084 69025045 ~ 69058294 (-) False G835608
TU950433 other upstream 986084 69025045 ~ 69048866 (-) False G835608

Expression Profile