RNA id: XM_036988807.1


Basic Information

Item Value
RNA id XM_036988807.1
length 2428
RNA type mRNA
GC content 0.57
exon number 16
gene id LOC110532737
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 68124488 ~ 68138733 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTATTTATCAAGAAAGTATAATAAAATGATTTTATTTCTTGAGGTCACCTCCAAGGGCGCAGGTCTGAACCCCAATGCCAAGGTGTGGCAGGCCCCTGCTGATGGCCCCGACGGAGCACAGTGGCCGCCGGCTGACATCACTGAAGGTTATTCCGAGTCTGTGCCCTCCACTGGTTGTAAACCGTACATGGTAGGCTTCACCACCCTGGAGGACAGCAGCTCCTCCGCAGCAGCCTCAGCTGAGATCACTGTGAACGGCATGGATCCTCCAGACCTGGCGTTCACCCCTGCTGAGACTACAACTGGGACCTTGGGGGAGACCAAGCTGACCGAGGAACAGCCCCTCTCGTCAGAGAACCTGACAGAGTCCCTCAAGAAAGAGCTGGAGTTCTACTTCTCTCGGGAGAACCTGTCCAAGGACCTATACCTGATGTCCCAGATGGACAGTGACCAGTTTGTCCCCATATGGACCATCGCCAGCATGGAGAGCATCAAGGCCCTCACTACTGACATGGAGCTCATCCTGGACGTGCTCCGATCCTCTCCAATGGTTCAGGTGGATGAGCAAGGAGAGAAGGTGCGTCCTGATCACAAACGCTGCATCATCATACTGAGGGAGGTTCCTGAGACGACACCTGTAGAGGAAGTGGAGGCTCTCTTTAAAAGTGATGACTGTCCGAAAGTCATTAGTGTAGAGTTTGCGCACAATAACAACTGGTACATCACATTCCAATCTGACACTGATGCTCAACAGGCACACAGATATCTAAGAGAAGAGGTGAAAACATTTCAGGGAAAACCTATCATGGCGAGGATAAAAGCCATCAACACATTCTTTGCTAAGAATGGGTACCGTAGCATGGACAGCAGCCTGTACACAGCCCAGCAGTCTGCCCCGACCCAGACCCAGTACAACCCTAACCTGTACATGCAGCACGTGTACAGCCCTCAGCAGCAGTACCCTCTCTACGGCATTGTACCACAGACCTGGACAACCTCTCCTACACCCTACTTCGAGACTCCGCTGGCACCATTTCCCAACAGTGGCTTTGTGAATGGATTCAGTTCTCCTGGACACTACAAGACTGGCAACAACTCCCTCCACATAACTCGCCCCTTCAACAGAAACCGGAACCATGTGAAACCCCAGGTGGGGAGACCAGGTGAAGTGACCCCTACATCTGTGGCCCCTGTCCCCTTGGAGAGCTTGACTGGCCTGAGGAGCCCTCAGCCCCCCACCACCAACCCTGGGCCCCTCCAGACCCCTCCGGACCCGACCTCAACcttcccccacctctcctccacctcctcggACCCCAATGATGACGGAAGCATGTCTGTACGTGGAAGAAGGACGACATACAGAGGCACgcgaaggaggagagaggatgagcgGATCACGAGACCCGTCCCTCTGGCTGAGGTAAAGGTGGCGCCCCCTAAGTTTGACCTGGCTACTACTAGTTTCCCCCCGCTGCCGGGCTGTGTGGCCAGTACCCAGGGAGAGCCCCTACTGGAGAACAGGATGTCTGACGTGGTGCGAGGACTGAACAGGGACAAGACAACGGAACTAGCCAACAAGGAAGTGAGTGCCGCCCCAGGACATGAGGAGGCAGTGTCTGTCTCTAGTCTTGTTCAGCCTACAGCCAAACTTGCTGTACACCCTCAAGCACCCCCcgcccctgtcccagcccccagCGTACCACATCAGGAGAAGAAGTGGGATAGGGTGGCAGAGCCCTCAGCCCCCAAAGTCACCCCACATAGACGTGCTATCTCTGGGGCCAACCCAACCGGACCCCCCTCCACACAGCCAGCTGTGTCTGGCCCCAAGCCCCAACCCAGAACAGTGTCCTCTACACCAGTTACACCGAGCACCCTGGcctctactaccaccaccaccaccaccactactacccctGCACCACTGGAGCCCCGCAAGCTCAGCTATGCCGAGGTGTGCCAGCGAGCCCCCCCTCCAGGCCCCCCAGCCTCGGCCTCCTCCACACCAGCCCAGCCGCTGCGTGAGCAGCGTGTCAACAAAGCAGAGGAGCCAGGATCCAGCTCCACCACCAGCCCAGACGACCACACCAGGGGAGATCGGCAGGACAAGGCCCAGGagagggatgggggctgggagtGCAAGGAGAGCCGACCACGTGACCGTGACCATCGAGACCGTGACTCCCGGGATGGACGGTACTACCGCAACAATGGACCCCCCAGACAGGGGGGCTCTGGGGGCCTCAAGTTCCATGAACAGAGACGGGGTCCCCAACTGGCCCGACGCAGCTCCCCCCAAGGATGCCCCCGACACACTGGCAAAGAGCAGAACATCCCCCCGGTATCGCCAAAGTAAAACTTCTGATATGACTgatgaaaacaaacaaaagtgtgacatatatggatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU949108 lncRNA downstream 62911 68061252 ~ 68061577 (-) True G834515
TU949062 lncRNA downstream 153046 67968766 ~ 67971442 (-) True LOC118966101
TU948979 lncRNA downstream 306875 67816739 ~ 67817613 (-) True G834409
TU948919 lncRNA downstream 331131 67791089 ~ 67793357 (-) False G834361
TU949182 lncRNA upstream 80462 68217045 ~ 68233316 (-) True G834580
TU949159 lncRNA upstream 109956 68246539 ~ 68252815 (-) True LOC110531251
TU949204 lncRNA upstream 119173 68255756 ~ 68256003 (-) True G834600
TU949207 lncRNA upstream 121242 68257825 ~ 68258113 (-) True G834603
TU949214 lncRNA upstream 130313 68266896 ~ 68267119 (-) True G834610
XM_036988803.1 mRNA downstream 44589 68028877 ~ 68079899 (-) False LOC110531249
XM_036988804.1 mRNA downstream 44590 68028877 ~ 68079898 (-) False LOC110531249
XM_036988801.1 mRNA downstream 96697 67930820 ~ 68027791 (-) False LOC110532734
XM_036988802.1 mRNA downstream 96697 67934731 ~ 68027791 (-) True LOC110532734
XR_005053329.1 mRNA downstream 153043 67967813 ~ 67971445 (-) False LOC118966101
XM_021616851.2 mRNA upstream 2232 68138815 ~ 68151033 (-) False LOC110532738
XM_021616852.2 mRNA upstream 2232 68138815 ~ 68151033 (-) False LOC110532738
XM_021616853.2 mRNA upstream 2232 68138815 ~ 68151033 (-) True LOC110532738
XM_036988808.1 mRNA upstream 14688 68151271 ~ 68179048 (-) True LOC110532739
XM_021616859.2 mRNA upstream 45983 68182566 ~ 68193123 (-) False LOC110532740
TU949074 other downstream 85527 68028408 ~ 68038961 (-) True LOC110531249
TU948836 other downstream 563911 67543150 ~ 67560577 (-) True LOC110532727
TU948136 other downstream 669088 67448451 ~ 67455400 (-) True LOC110531246
TU947907 other downstream 939245 67179249 ~ 67185243 (-) False G833521
TU947908 other downstream 942422 67179249 ~ 67182066 (-) True G833521
TU949318 other upstream 239075 68375658 ~ 68376157 (-) True G834676
TU950434 other upstream 843300 68979883 ~ 69056680 (-) False G835608
TU950419 other upstream 888462 69025045 ~ 69025857 (-) False G835608
TU950420 other upstream 888462 69025045 ~ 69058294 (-) False G835608
TU950433 other upstream 888462 69025045 ~ 69048866 (-) False G835608

Expression Profile