RNA id: XR_005053339.1



Basic Information


Item Value
RNA id XR_005053339.1
length 853
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC118966106
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 69054523 ~ 69056165 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTATTTCTTCTCTATTTGCAGATGCCTATAACTTTGATACTTCTAAACGTTGAACCCTGTTCCACATATGATCCAGCCATCTTTAAAATAGGTGACAGATATTGCAGAATGTGTAGGCCTGGATATCATGTACATAGTCATTGTACTACATCTACATTCACCTCCTGTGTGCCCTGTATTGACTCCACCTTCCTTGATGAGCCCAGTGGTAAAACAACATGCAACAACTGTACCACATGTGATCCAGGTTTGGGTTTGATGGTAAAGCAGCCATGTAGACCTTCATCAGACACTGTCTGTGGGACACTGGAGGGGTTCTACTGTCTAGACCCAACTAAGGATGGTTGTAGAGCAGCCCAGAGACACAGCAGCTGTAAACCTGGTCAATACATCAGTCACACAGGAACAGCATCTACAGATACTGTGTGTTCTGACTGCACTGGTGATACTTATTCAGATGGATCATTTACATCctgccagccacacacacaGTGTAAATCCTTAGGTCTTCAAGAACTAAGACCAGGAACTCATTGGTCCAATTCTGAATGTGGACCACAATCCTCAAGTATAGAACCTGGAATCACCATTGGTGTTGTTGTGGCATCAGTCCTAATAGCtcctataataataataagaagaataATTGTAATTCTAAGGAAGAAAATAAGTCCAACAACAGTGACTTTTTCTCCAGTGACAGTAAATGCTGTAGAGGCATCATCATATTTAGAGGAAACACCAAGCAATGTAGTACAATGAAACAGAAGAAAGTACAGCATCTTGCAGGTGTTAGTTTTGTAAATGATTCAAGCTCTGACTGCACTCATCATTACAAATGCTACCTGAGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU950418 lncRNA downstream 9849 69039394 ~ 69044674 (-) False G835608
TU950426 lncRNA downstream 13488 69038914 ~ 69041035 (-) False G835608
TU950425 lncRNA downstream 13488 69039394 ~ 69041035 (-) True G835608
TU950421 lncRNA downstream 28869 69024820 ~ 69025654 (-) False G835608
TU950423 lncRNA downstream 28869 69025045 ~ 69025654 (-) False G835608
TU950502 lncRNA upstream 26266 69082431 ~ 69082749 (-) True G835652
TU950508 lncRNA upstream 29784 69085949 ~ 69089002 (-) False G835654
TU950506 lncRNA upstream 30240 69086405 ~ 69089002 (-) True G835654
TU950437 lncRNA upstream 141612 69197777 ~ 69220305 (-) False G835609
TU950436 lncRNA upstream 141744 69197909 ~ 69268231 (-) False G835609
XM_036988836.1 mRNA downstream 4692 69024340 ~ 69049831 (-) True LOC110532760
XR_005053342.1 mRNA downstream 10989 69038907 ~ 69043534 (-) True LOC110532759
XR_005053341.1 mRNA downstream 11184 69038907 ~ 69043339 (-) False LOC110532759
XM_021616887.2 mRNA downstream 19677 69024339 ~ 69034846 (-) False LOC110532760
XM_021616881.2 mRNA downstream 42315 69005427 ~ 69012208 (-) True LOC110532757
XR_005053343.1 mRNA upstream 50033 69106198 ~ 69107392 (-) False LOC118966107
XR_005053344.1 mRNA upstream 50033 69106198 ~ 69107392 (-) True LOC118966107
XM_036988856.1 mRNA upstream 297830 69353995 ~ 69356367 (-) True LOC110532775
XM_036988863.1 mRNA upstream 1017379 70073544 ~ 70093532 (-) True LOC110532794
XR_005053348.1 mRNA upstream 1026516 70082681 ~ 70084480 (-) False LOC118966109
TU950433 other downstream 5657 69025045 ~ 69048866 (-) False G835608
TU950419 other downstream 28666 69025045 ~ 69025857 (-) False G835608
TU949318 other downstream 678366 68375658 ~ 68376157 (-) True G834676
TU949074 other downstream 1015562 68028408 ~ 68038961 (-) True LOC110531249
TU948836 other downstream 1493946 67543150 ~ 67560577 (-) True LOC110532727
TU950674 other upstream 375402 69431567 ~ 69431900 (-) True G835808
TU951555 other upstream 1026641 70082806 ~ 70084697 (-) False LOC118966109
TU951556 other upstream 1026641 70082806 ~ 70084697 (-) False LOC118966109
TU951557 other upstream 1026641 70082806 ~ 70084697 (-) False LOC118966109
TU951558 other upstream 1027236 70083401 ~ 70084010 (-) True LOC118966109

Expression Profile