RNA id: XM_036988856.1


Basic Information

Item Value
RNA id XM_036988856.1
length 1983
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110532775
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 69353995 ~ 69356367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaatgctgaagacacatttaagttgaaggcattcagttgtacaactgactaggtacccccctttcctcATTTTACGTACGCTCTGGAGCTGAGTGGACCAGGACAACTGCCCCATTGCCAACATGATAAATGTCCACAGGGGCAACGTCCTAAACAGTAGCCTGCATGCGTTTCAAAACAAAAACTTTAATGCATGAGGCTAAGATGGACGTTGTCTTTGTGGACGCTGAGTCCAAGGTGGAGGGGGCAGTTGACCAATGGGGTCCCTCCAGGGAGTATTACATCTCCTCGTGAGGGACATCAGAGGATCGGCCATCTTTGAGGGTCCGGAAGGAACTAAACGTATGTTGCTTGATGTCCATGGTAAGCCTTCTCGTTTCTTTTTACCCGTATTAAGGTCTGATTTTCATTGTCAAATACAGAATTTTAGCCAAAACATTTTGTGAAGAGGCTTTTTCAAGTGCTTTGTCCAGGGCAATATATCATAGGGATAGTAAAGCTGGCACACATTTGAAATAATATTTTTAGCATCACATGAGGGCCTGTATGGAACCATTGGGAAaatgatcagtgtgtgtgtggtccttggAGGGGTTGGGCCTCTTCTCTGAGCGACTCTTCGCAGCAGCGTGTGGGCGCCTGCTCCCCCACTCAGTCTGGAGGAGGTGAGCCACACTACTCTGAAAGCATATTGGAAAATATAAAAAAAAGCAGAGGACCTATCCGAGGTGAAGAACAAATTGGAGGAATCGGTAGACTTGCTGAGCCTACTGGGGCTGAAAAGGAGTGTTGTCAAGACAATGGAGGACAGGGATGGTGTGATTGAATTGGTGGCTCAACAATTTGTCCGAGGGAGCATGCAGGTGGCCTTGGAGCAGTTCATACATGGTCTCAACTCTCTTGGGCTGCTGGAGGCATTGGGGAACGACTCGGACAGCTTCCGAGTACTCTTTGTTGACCCCATAAAGCCTCTCACTGCCAAGGACCTGATGGACCTGTTTAAAGTAACCTATTCCATACCTGGCGGCAACCGGCGGTGGTTGGAGAACGACACCATCTGCCACTGGTTCAACTGGCTGGCTGAGGTGCAAGATGGAGAATGTCCTCCTCTAAcagtgatgatggtgttggagtttaCTACTGGGGCAACGGGGCCACCCCTGGGGTTTGAGGTCACCCCGACAATCGAATTCCTCCACACAGCGCGAGGGCGTCTCGCTGGGCAGCAGAAGAAAAAGTACCCAGAGGCAAACATGTGTGCTGTCACACTAAGGCTCCCTCTTCATAGCACCTACAATGCCTTTAGGGAATTCATGACCTCCGGTATTGTGAATTCCCCACATTTCGATGTTGCATAAAAACATTTTTATGATACCGAATGTATAGAATTGTATCCAGTAGCACTACACTAACAATTGAGtgtttcaaaatgtaactgcACATCAACATTTTAAGCATTTATCTACTGATAGGTTTGGATTTCTGAGCTTTATCTGGGATTAATCATTAGTTATAGGATTAATCATTAGTTATATGATTAATCATTCGTTATAGGATTAATCAATAGTTATAGGATTTATCATTAGTTATTGGATTAGGCTTCCTgcttttctcaggtttttgcctgccttatgagttctgttatactcacagacatcattcaaactgttttagaaacttcagagtgttttctacccagatctactaatgatatgcatatattagcaactgggcctgagtagcagacagtttactctgggcaccttattcatccaagctactcaatactgcccccagccataacagGTTATAGGAATAATCATTAGTTATAGGATTAGGCTTCCTGCCTAGCAATAACATGCTATGTTTAGCAATaaggaggagactccacccaaAGTGGGGTATGTATACTACCACAGGTGAAACCATGTCTTGGTCTGTTCAGCTGTTCGATCCTTTGggatgaataaacttggtttaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU950579 lncRNA downstream 18938 69293639 ~ 69335057 (-) False G835721
TU950581 lncRNA downstream 18938 69293639 ~ 69335057 (-) False G835721
TU950583 lncRNA downstream 18938 69293639 ~ 69335057 (-) True G835721
TU950590 lncRNA downstream 23481 69327103 ~ 69330514 (-) True G835728
TU950607 lncRNA downstream 50863 69291447 ~ 69303132 (-) True G835744
TU950657 lncRNA upstream 14216 69370583 ~ 69372548 (-) True G835791
TU950596 lncRNA upstream 41988 69398355 ~ 69417343 (-) True G835734
TU950586 lncRNA upstream 42840 69399207 ~ 69401206 (-) True G835724
TU950673 lncRNA upstream 63600 69419967 ~ 69420183 (-) True G835807
TU950681 lncRNA upstream 91966 69448333 ~ 69448594 (-) True G835815
XR_005053343.1 mRNA downstream 246603 69106198 ~ 69107392 (-) False LOC118966107
XR_005053344.1 mRNA downstream 246603 69106198 ~ 69107392 (-) True LOC118966107
XR_005053339.1 mRNA downstream 297830 69054523 ~ 69056165 (-) True LOC118966106
XM_036988836.1 mRNA downstream 304164 69024340 ~ 69049831 (-) True LOC110532760
XR_005053342.1 mRNA downstream 310461 69038907 ~ 69043534 (-) True LOC110532759
XM_036988863.1 mRNA upstream 717177 70073544 ~ 70093532 (-) True LOC110532794
XR_005053348.1 mRNA upstream 726314 70082681 ~ 70084480 (-) False LOC118966109
XM_036988866.1 mRNA upstream 726314 70082681 ~ 70084496 (-) False LOC118966109
XM_036988864.1 mRNA upstream 726314 70082681 ~ 70084497 (-) False LOC118966109
XM_036988865.1 mRNA upstream 726314 70082681 ~ 70084498 (-) False LOC118966109
TU950420 other downstream 295701 69025045 ~ 69058294 (-) False G835608
TU950434 other downstream 297315 68979883 ~ 69056680 (-) False G835608
TU950433 other downstream 305129 69025045 ~ 69048866 (-) False G835608
TU950419 other downstream 328138 69025045 ~ 69025857 (-) False G835608
TU949318 other downstream 977838 68375658 ~ 68376157 (-) True G834676
TU950674 other upstream 75200 69431567 ~ 69431900 (-) True G835808
TU951555 other upstream 726439 70082806 ~ 70084697 (-) False LOC118966109
TU951556 other upstream 726439 70082806 ~ 70084697 (-) False LOC118966109
TU951557 other upstream 726439 70082806 ~ 70084697 (-) False LOC118966109
TU951558 other upstream 727034 70083401 ~ 70084010 (-) True LOC118966109

Expression Profile