RNA id: XM_036988863.1


Basic Information

Item Value
RNA id XM_036988863.1
length 2045
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110532794
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 70073544 ~ 70093532 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATAGATGTGGGTTGTGTGATATCTGCTCCCCCCTCCTTAAACTGCTCCCAACCGGCCCTCTTCATTCACTACTTCATTTCCATCCTTCCACTTCTCTACCACGTAGGACGGAACATCTAAGGTTCAGAAGGACGACGACATGAAAGCGTTTATTGGATCGGTTTTGTGTGTGGTGGCACTGCTATTTGTTGTTTGCACTGCAGGGCCCCCGGTGTTATCCGTCTCCACTATATTGCAAGAACCATACACTATGACCCAAGGGTCTGAGCTGGAGGGGTACTGCATTGACCTGCTAGCGGAGATTGCCAAACGGTTGGACTTCAagtacaccgtgcacctggtgaaGGATGGAAAGTATGGGCAACAGGATGAGAGCGGAAACTGGTTGGGGATGATCGGGGAGGTGGTCCGAGGGGAGGCCGACCTGGCGGTAGCCTCTCTGACCCTCACAGcgaccagggaacagggggtggAGATGAGCACTCCCTTCATGCAGACGGGCATTGGTTTCATCCTGAGCAGGGACGTGGGCTCCGAGGAGAGCCACTCCCTCAGCTTCCTCTTCCCCTTCTCCACCGAAATGTGGGTGGGCATCCTCCTGGCCTTCCTGGTGACCGGCCTCTGCATATATCTGGTTTCTAGGATAAGCCCCTGTGAGTGGGCAGACCCCGAGACAGACGAACACAGCTTCACTCTCCTGCACAGCTTctggtacatcactggagccCTGACCCTGCAAGGTGCTGGCCCACACCCTAAAGGCCTGTCTGGTCGCGTTATCAGCGCTATCTGGTGGGTGTTCGCGGTGGTGCTCCTGGCCTGCTACTTCAGCAACTTTAACGCCATGCTACGCTCGGATTCCAAACATGTCTCCGTGAATAACTTCGAGGAGCTGGCCAAACAGGACGTCATCGACTACGGAACAGTCGAAGGGGGATCCACGTTCAACTTCTTCAAAAACTCCAAAAACCCCACCTACCGACGCATCTACCAGCATATGGAGAGGAAGAAGAGTTGTGTGGCTTCAGTGGAAGAGGGCAATCGACGCACCCAGGAAGGCAACTACGCCTTTATTGGAGAGGCAGCGTCTCTGGACCTGGCTGTGGCTCGCTACTGCAACCTGATCCGCAGCAGCGAACTCATCGCCATGAGAGGGTACAGCATTGCAGCACCCCTAGgctTTCCAATGATGAAGAACATAACAGTGGCCATACTGCAACTGAGTGAATCTGGGGAGTTGGCCTTCCTGCAGAGTAAGTGGTGGGCCAGCAGCTGCTTGCCAGAGGGGGGCCAAGCCCCACATGCCCTCCAGCCCCACCTCCTGAGGGGTCTATTCCTTCTCCTGGCCCTGGGGTTGGGCCTGGGACTCCTCATGGCCATCCTGGAGCTTGCCTCCAAGGCCCGCAGTCAAGCCAAGGACCAGAAGAAATCCTGCTGCTCAGTGTTGTTGGCAGAACTGAGTCAGCGCTTCGGATCGCGTGGGGCAAACGCAGGCACAGAGATGTCAGAGAAGAGCAAAGCGTAAAGGATACGTTTCACTGGCTGGTTCCTAACAACATCAGAGTTGGATATGCAAATAAGACCGTGTAAATCCGTTCCTGTCCTTGAGAGCAGCAGTGTCTTCCCTATCATAGTGTATCTACagcaatatgttctgtttcataACGTACCACACAGCTACCAAGTTCCCCACGTGTAAATACAATGGCTTGTTAGAGTAGATTCTACTATAGATTCCACTCTGAAAAGGTATTATAGAAAACAGCAACAATAGCATTTCCTGTCCTCAGACGACATGGTCCATAGCAGAAATGAACTAACAGTGATGAAATATTAAGTTGATACAGGCTCTTCAATGAACCTCCAGATGAATGTGTAAGTGTATGTTATTGTAGGcctatttgttgttgttgatatgaACAGGTTGTATTTTTTGTACTGCCAAAATATGTTGTACTAAATCACATCTGATTGGCTTTTAAGTTGTTTCATTAACTGTTCTGTGTAACGTTTAACTGTCTACCAAATAAATTCCTAGACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU951205 lncRNA downstream 4787 70042981 ~ 70068757 (-) True G836298
TU950925 lncRNA downstream 296392 69776943 ~ 69777152 (-) True G836039
TU950924 lncRNA downstream 296794 69776531 ~ 69776750 (-) True G836038
TU950920 lncRNA downstream 299915 69768055 ~ 69773629 (-) True G836034
TU950900 lncRNA downstream 328287 69743067 ~ 69745257 (-) True G836017
TU951562 lncRNA upstream 1306 70094838 ~ 70095044 (-) True G836566
TU951563 lncRNA upstream 2861 70096393 ~ 70096678 (-) True G836567
TU951567 lncRNA upstream 19764 70113296 ~ 70113612 (-) True G836571
TU951591 lncRNA upstream 76474 70170006 ~ 70170206 (-) True G836595
TU951592 lncRNA upstream 79652 70173184 ~ 70173422 (-) True G836596
XM_036988856.1 mRNA downstream 717177 69353995 ~ 69356367 (-) True LOC110532775
XR_005053343.1 mRNA downstream 966152 69106198 ~ 69107392 (-) False LOC118966107
XR_005053344.1 mRNA downstream 966152 69106198 ~ 69107392 (-) True LOC118966107
XR_005053339.1 mRNA downstream 1017379 69054523 ~ 69056165 (-) True LOC118966106
XR_005053342.1 mRNA downstream 1030010 69038907 ~ 69043534 (-) True LOC110532759
XM_036986970.1 mRNA upstream 4171 70097703 ~ 70101827 (-) True LOC118965942
XM_036988873.1 mRNA upstream 8103 70101635 ~ 70186834 (-) False LOC110531267
XM_036988874.1 mRNA upstream 8125 70101657 ~ 70186834 (-) True LOC110531267
XM_036988888.1 mRNA upstream 334419 70427951 ~ 70479312 (-) False LOC110531265
XM_036988889.1 mRNA upstream 334419 70427951 ~ 70479312 (-) False LOC110531265
TU950674 other downstream 641644 69431567 ~ 69431900 (-) True G835808
TU950420 other downstream 1015250 69025045 ~ 69058294 (-) False G835608
TU950434 other downstream 1016864 68979883 ~ 69056680 (-) False G835608
TU950433 other downstream 1024678 69025045 ~ 69048866 (-) False G835608
TU950419 other downstream 1047687 69025045 ~ 69025857 (-) False G835608
TU951615 other upstream 115146 70208678 ~ 70209625 (-) True G836619
TU951719 other upstream 334934 70428466 ~ 70428958 (-) True LOC110531265
TU953256 other upstream 1728065 71821597 ~ 71822337 (-) True G837952
TU953440 other upstream 1841346 71934878 ~ 71936573 (-) True G838098
TU953585 other upstream 2025129 72118661 ~ 72119287 (-) True G838204

Expression Profile