RNA id: XM_036988929.1


Basic Information

Item Value
RNA id XM_036988929.1
length 2401
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110531271
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 71960538 ~ 71980385 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAAAAGATCACATGAGTCTCTTCGGCATCGCTGTTGTTTTTCCATTTGCGCCATTTTGTTCGCTCACTTTGGTGATTGGGCTTTAGAACCCTGTACTGGAGCCAATCAGAAGGATACCGGACAGCGGAGACACGGAAGTGGCTATAACAGGAAGTGACAATAACAGGAAGTGACTAGCTGACCATGGagtacaccaccgccaccacctcGACTGGGGAGCAGATAGTCGTGCAGACATCCAAtggacagatacaacaacaggTCCAGGGTCAGCCCCTGATGGTGCAGGTGAGCGGAGGGCAGTTGATCACGTCGTCAGGGCAACCCATCATGGTGCAGGCTATGGGTGGGGGACAGGGACAGACCATCATGCAAGTGCCTGTGTCTGGAGGACAGGGACTACAACAGATCCAGCTGCAGGGTGGACAGCAGATCCAGCTGCAGAACGGTCAGACGATCCATCTAGGGGGACAGCAGATCCAGCTGCAGGGTGGACAGATGTTACAGCTCGGGGGACAGCAGGGTCAAACCCAACAGATCATCATCCAACAGCCACAACAAGCCATCACAGCCGGACAGAACCagGGCCAGCAGATCCAGTTGCAGCAGGGCCAGCAGCTGGCTCAGACGGCTGACGGCCAGACCATCGTCTACCAGCCGGTCAACGCAGACGGCACCGTCCTGCAACAGGGAGGCTTTTTCTCCCCAGGAATGATCACCATCCCAGCAGGCAGTCTGACGGGGGCCCAGATGGTACAGACAGGGGGCgccaacaccaccactaccaacagtGGACAGCAGGGCACCGTGACCGTCACCCTGCCGGTCTCAGGCAACATGATGAACACCGGTGGCATGGTCATGATGATGCCTAGTGGAGGTGCGGTGCCTGCTATGCAGCGTATCCCTCTACCCGGGGCTGAGATGTTAGAGGAGGAACCTCTGTATGTCAACGCTAAACAGTACCATCGCATCCTGAAGAGAAGACAGGCCCGCGCCAAGCTGGAGGCAGAGGGCAAGATCCCTAAAGAGAGGAGGAAATACCTGCATGAGTCCCGTCACCGCCACGCCATGCAGCGCAAGAGGGGAGACGGAGGACGCTTCTTCTCTcccaaggagagggaggagatggccCTGGCCCTGCAACAggcagagctggccgcccaggcaGGAGAAGACGATGTAGCACAGATGGTCCGAGTTTCTTAGCACCTACAACCCCCGACCACCCCTCCGTCAGCCAGTCGAGGCcctctgagccccccccccccccacccagctAGACAGCACCCAGCTACACCTCTCATCTCCtaagaataataataattggaTTGGATTGATAGAGCACTTCTCCAGACACTCAAAGTTCTTTACAATGTAAGGAGGAAACTCATCCAAGAACTACAAATATGTAGCTCCTATCCGGATAATGCCATGGCAGACATAAACCTGTATTCTCCCACCACCTCTTGCCCCTATACTCAACAATATGATATCCCTATGACTGGTGTCCTCCATGATGGGTCACTATGAGTTAACTTTAACCCTTGACCTCCCAACTCCCTGGTCTTCCAGGCCTGGCTCTGTGACTGACCGCAGTGCCTGAGGTATTCAGTAAGATGTGAAAGTTAAGATTTACTGGGACTGTAGCGCTCTGTCCTGGAAACCAAGACAACGATGAGATGTTTCACCTGCATAATACCACCGGTCAATGATTTCATGTTTGCTGACGAAGTCATAACTGACGGTAGTTAGTTGCAGAATACATTTTGTTTGGTCGTAAAAGCAgctcatttttgttgttgttggtgtgtttcacaaatgcaaaaaaaaactgtttacaAATTCAGCTGTAAAAGAGTCAAAATGATGGAACACTTTATTGTTGCCCTGTATGTGTATTTTGTTGAAACATGCAACACCATAGAAGCCCAGCCTTGGTCCATAAGGATTGTCAAATATTGTCTCCAAAAATGGATATTAGTTAGAACGTTTTTTTTGTAAGCACTTCTCAGCAGGGTCCAATTTCAAAATGTTCTCATAGAGGAACATtttaatttcagtttacttcctgaattgaaatggaagtGACCCCTTAGTCTTGCATTTCAGATGTGATTGCAATATCCAGCCCCCAGTTATTGTCTGTACAGGGAATGTGTATTTTATATGACTTTTTTTTTAATAGACACATTGATGTTGACACGACGTCTGAGTGACCCGTGTACTTTGTCTGATTTACTTTAGGgcgtctttttttattttttttttgaagaGTACGTTTTCTATTCTTCTGAAGCAGTCCtccaaaacattattttttttgtttttttttgtgtggttgACGCCATTGTTTCAAAGAGCTCATCTGTTCATTAAATTCTATTACGTTGACTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU953439 lncRNA downstream 23965 71934878 ~ 71936573 (-) False G838098
TU953437 lncRNA downstream 26174 71934111 ~ 71934364 (-) True G838097
TU953431 lncRNA downstream 32442 71927446 ~ 71928096 (-) True G838091
TU953418 lncRNA downstream 62560 71897006 ~ 71897978 (-) True G838082
TU953396 lncRNA downstream 121833 71838486 ~ 71838705 (-) True G838062
TU953462 lncRNA upstream 2250 71982635 ~ 71983470 (-) False G838113
TU953465 lncRNA upstream 2250 71982635 ~ 71983470 (-) False G838113
TU953464 lncRNA upstream 2458 71982843 ~ 71985080 (-) True G838113
TU953496 lncRNA upstream 57478 72037863 ~ 72038077 (-) True G838139
TU953501 lncRNA upstream 61340 72041725 ~ 72042232 (-) True G838144
XM_036988925.1 mRNA downstream 4992 71906991 ~ 71955546 (-) True LOC110532803
LOC110532805 mRNA downstream 54764 71901581 ~ 71905774 (-) True LOC110532805
XM_036988924.1 mRNA downstream 60790 71834204 ~ 71899748 (-) False LOC110532802
XM_036988921.1 mRNA downstream 367384 71583494 ~ 71593154 (-) False LOC110517102
XM_036988931.1 mRNA upstream 4749 71985134 ~ 72035813 (-) True LOC110531272
XM_036986973.1 mRNA upstream 226061 72206446 ~ 72222104 (-) True LOC110532812
XR_005053371.1 mRNA upstream 255743 72236128 ~ 72238619 (-) False LOC118966115
XR_005053368.1 mRNA upstream 255744 72236129 ~ 72238616 (-) False LOC118966115
XR_005053370.1 mRNA upstream 255745 72236130 ~ 72238619 (-) False LOC118966115
TU953440 other downstream 23965 71934878 ~ 71936573 (-) True G838098
TU953256 other downstream 138201 71821597 ~ 71822337 (-) True G837952
TU951719 other downstream 1531580 70428466 ~ 70428958 (-) True LOC110531265
TU951615 other downstream 1750913 70208678 ~ 70209625 (-) True G836619
TU951558 other downstream 1876528 70083401 ~ 70084010 (-) True LOC118966109
TU953585 other upstream 138276 72118661 ~ 72119287 (-) True G838204
TU955034 other upstream 1046590 73026975 ~ 73028966 (-) False G839372
TU955035 other upstream 1046681 73027066 ~ 73028966 (-) True G839372
TU955315 other upstream 1480970 73461355 ~ 73463040 (-) True G839553
TU955441 other upstream 1744867 73725252 ~ 73731630 (-) True rs21

Expression Profile