RNA id: TU868687


Basic Information

Item Value
RNA id TU868687
length 398
lncRNA type intronic
GC content 0.41
exon number 3
gene id G763638
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 2086519 ~ 2088592 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aGACCTCACTGCATTTaaataaattactaaaaataataagaaataaaagactatatacagggtattacggtacaaagtcaatgtggaggctatatacaggttattacggtacagagtcaatgtggaggctatatacagggtattacggtacaaagtcaatgtggaggctatatacagggtattacggtacacagtcaatgtggaggctatatacagggtattacggtacagagtcaatgtggaggctatatacagggtgttacggtacaaagtcaatgtggaggctatatacagggggtaccggtacagagtcaatttggagactatatacagggggtaccggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU868618 lncRNA downstream 2706 1947567 ~ 2083813 (-) True LOC118965963
TU868678 lncRNA downstream 33240 2048314 ~ 2053279 (-) True G763633
TU868664 lncRNA downstream 54265 2018904 ~ 2032254 (-) True G763619
TU868626 lncRNA downstream 63692 2017699 ~ 2022827 (-) False G763586
TU868628 lncRNA downstream 63863 2017699 ~ 2022656 (-) True G763586
TU868695 lncRNA upstream 21265 2109857 ~ 2112605 (-) True G763645
TU868697 lncRNA upstream 26088 2114680 ~ 2115090 (-) True G763646
TU868703 lncRNA upstream 51742 2140334 ~ 2141422 (-) True G763652
TU868706 lncRNA upstream 54816 2143408 ~ 2144350 (-) True G763655
TU868707 lncRNA upstream 72655 2161247 ~ 2162044 (-) True LOC118966148
XR_005053091.1 mRNA downstream 2105 2083262 ~ 2084414 (-) False LOC118965963
XR_005053090.1 mRNA downstream 11628 2069921 ~ 2074891 (-) True LOC118965962
XR_005053080.1 mRNA downstream 105632 1968575 ~ 1980887 (-) True LOC118965956
XM_036987022.1 mRNA downstream 308054 1744643 ~ 1778465 (-) True LOC110517376
XM_036987018.1 mRNA downstream 348988 1642136 ~ 1737531 (-) False LOC110515190
XR_005053079.1 mRNA upstream 69390 2157982 ~ 2158681 (-) True LOC118965955
XM_036989226.1 mRNA upstream 73169 2161761 ~ 2162609 (-) False LOC118966148
XM_036987011.1 mRNA upstream 123682 2212274 ~ 2354313 (-) False LOC110535267
XM_036987012.1 mRNA upstream 123682 2212274 ~ 2354313 (-) False LOC110535267
XM_036987013.1 mRNA upstream 123682 2212274 ~ 2354313 (-) False LOC110535267
TU868630 other downstream 108288 1962973 ~ 1978231 (-) False G763587
TU867065 other downstream 1220087 861374 ~ 866432 (-) False G762459
TU867058 other downstream 1221407 861374 ~ 865112 (-) False G762459
TU868794 other upstream 384506 2473098 ~ 2486901 (-) False G763719
TU868793 other upstream 386482 2475074 ~ 2486901 (-) True G763719
TU869128 other upstream 1207710 3296302 ~ 3299103 (-) True G763961
TU869858 other upstream 1763379 3851971 ~ 3858893 (-) False LOC110498423
TU870731 other upstream 1925242 4013834 ~ 4016409 (-) False LOC118966151

Expression Profile